├── .idea ├── encodings.xml ├── misc.xml ├── modules.xml └── topodeepfeature.iml ├── Code ├── .README.txt.swp ├── TDFPython │ ├── PersistencePython.so │ ├── TDFMain.py │ ├── __init__.py │ ├── error.txt │ └── log.txt ├── __init__.py └── cPers │ ├── blitz │ ├── Makefile.am │ ├── Makefile.in │ ├── README │ ├── applics.h │ ├── array-impl.h │ ├── array-old.h │ ├── array.h │ ├── array │ │ ├── Makefile.am │ │ ├── Makefile.in │ │ ├── asexpr.h │ │ ├── bops.cc │ │ ├── cartesian.h │ │ ├── cgsolve.h │ │ ├── complex.cc │ │ ├── convolve.cc │ │ ├── convolve.h │ │ ├── cycle.cc │ │ ├── domain.h │ │ ├── et.h │ │ ├── eval.cc │ │ ├── expr.h │ │ ├── fastiter.h │ │ ├── funcs.h │ │ ├── functorExpr.h │ │ ├── geometry.h │ │ ├── indirect.h │ │ ├── interlace.cc │ │ ├── io.cc │ │ ├── iter.h │ │ ├── map.h │ │ ├── methods.cc │ │ ├── misc.cc │ │ ├── multi.h │ │ ├── newet-macros.h │ │ ├── newet.h │ │ ├── ops.cc │ │ ├── ops.h │ │ ├── reduce.cc │ │ ├── reduce.h │ │ ├── resize.cc │ │ ├── shape.h │ │ ├── slice.h │ │ ├── slicing.cc │ │ ├── stencil-et.h │ │ ├── stencilops.h │ │ ├── stencils.cc │ │ ├── stencils.h │ │ ├── storage.h │ │ ├── uops.cc │ │ ├── where.h │ │ └── zip.h │ ├── bench.cc │ ├── bench.h │ ├── benchext.cc │ ├── benchext.h │ ├── blitz.h │ ├── blitz.vcproj │ ├── bzconfig.h │ ├── bzdebug.h │ ├── compiler.h │ ├── config.h.in │ ├── etbase.h │ ├── extremum.h │ ├── funcs.h │ ├── generate │ │ ├── Makefile.am │ │ ├── Makefile.in │ │ ├── arroperands.h │ │ ├── arroptuple.h │ │ ├── bzfstream.h │ │ ├── genarrbops.cpp │ │ ├── genarruops.cpp │ │ ├── genmatbops.cpp │ │ ├── genmathfunc.cpp │ │ ├── genmatuops.cpp │ │ ├── genpromote.cpp │ │ ├── genvecbfn.cpp │ │ ├── genvecbops.cpp │ │ ├── genvecuops.cpp │ │ ├── genvecwhere.cpp │ │ ├── operands.h │ │ ├── operands2.h │ │ ├── optuple.h │ │ └── optuple2.h │ ├── gnu │ │ └── bzconfig.h │ ├── indexexpr.h │ ├── limits-hack.h │ ├── listinit.h │ ├── matbops.h │ ├── matdiag.h │ ├── matexpr.h │ ├── matgen.h │ ├── mathf2.h │ ├── mathfunc.h │ ├── matltri.h │ ├── matref.h │ ├── matrix.cc │ ├── matrix.h │ ├── matsymm.h │ ├── mattoep.h │ ├── matuops.h │ ├── matutri.h │ ├── memblock.cc │ ├── memblock.h │ ├── meta │ │ ├── Makefile.am │ │ ├── Makefile.in │ │ ├── dot.h │ │ ├── matassign.h │ │ ├── matmat.h │ │ ├── matvec.h │ │ ├── metaprog.h │ │ ├── product.h │ │ ├── sum.h │ │ └── vecassign.h │ ├── minmax.h │ ├── ms │ │ └── bzconfig.h │ ├── mstruct.h │ ├── numinquire.h │ ├── numtrait.h │ ├── ops.h │ ├── prettyprint.h │ ├── promote-old.h │ ├── promote.h │ ├── rand-dunif.h │ ├── rand-mt.h │ ├── rand-normal.h │ ├── rand-tt800.h │ ├── rand-uniform.h │ ├── random.h │ ├── randref.h │ ├── range.h │ ├── reduce.h │ ├── shapecheck.h │ ├── tau.h │ ├── timer.h │ ├── tiny.h │ ├── tinymat.h │ ├── tinymatexpr.h │ ├── tinymatio.cc │ ├── tinyvec-et.h │ ├── tinyvec.cc │ ├── tinyvec.h │ ├── tinyvecio.cc │ ├── tinyveciter.h │ ├── traversal.cc │ ├── traversal.h │ ├── tuning.h │ ├── tvcross.h │ ├── tvecglobs.h │ ├── update.h │ ├── vecaccum.cc │ ├── vecall.cc │ ├── vecany.cc │ ├── vecbfn.cc │ ├── vecbops.cc │ ├── veccount.cc │ ├── vecdelta.cc │ ├── vecdot.cc │ ├── vecexpr.h │ ├── vecexprwrap.h │ ├── vecglobs.cc │ ├── vecglobs.h │ ├── vecio.cc │ ├── veciter.h │ ├── vecmax.cc │ ├── vecmin.cc │ ├── vecnorm.cc │ ├── vecnorm1.cc │ ├── vecpick.cc │ ├── vecpick.h │ ├── vecpickio.cc │ ├── vecpickiter.h │ ├── vecsum.cc │ ├── vector-et.h │ ├── vector.cc │ ├── vector.h │ ├── vecuops.cc │ ├── vecwhere.cc │ ├── vecwhere.h │ ├── wrap-climits.h │ ├── zero.cc │ └── zero.h │ ├── cPers.xcodeproj │ ├── project.pbxproj │ ├── project.xcworkspace │ │ ├── contents.xcworkspacedata │ │ └── xcuserdata │ │ │ └── cchen.xcuserdatad │ │ │ └── UserInterfaceState.xcuserstate │ └── xcuserdata │ │ └── cchen.xcuserdatad │ │ └── xcschemes │ │ ├── cPers.xcscheme │ │ └── xcschememanagement.plist │ └── cPers │ ├── .PersistencePython.cpp.swp │ ├── CubicalPers_gcc │ ├── DataReaders.h │ ├── Debugging.cpp │ ├── Debugging.h │ ├── Filtration.h │ ├── Functions.h │ ├── GeneralFiltration.h │ ├── InputRunner.h │ ├── PersistenceCalcRunner.h │ ├── PersistenceCalculator.h │ ├── PersistenceCubic.cpp │ ├── PersistenceIO.cpp │ ├── PersistenceIO.h │ ├── PersistencePython.cpp │ ├── PersistencyTypes.h │ ├── PersistentPair.h │ ├── Reduction.h │ ├── STLUtils.h │ ├── TreeShiftPython.cpp │ ├── compile_pers_lib.sh │ ├── makefile │ └── pybind11-stable │ ├── .appveyor.yml │ ├── .gitignore │ ├── .gitmodules │ ├── .travis.yml │ ├── CMakeLists.txt │ ├── CONTRIBUTING.md │ ├── LICENSE │ ├── MANIFEST.in │ ├── README.md │ ├── conda.recipe │ ├── bld.bat │ ├── build.sh │ └── meta.yaml │ ├── docs │ ├── _static │ │ └── theme_overrides.css │ ├── advanced.rst │ ├── basics.rst │ ├── benchmark.py │ ├── benchmark.rst │ ├── changelog.rst │ ├── classes.rst │ ├── cmake.rst │ ├── conf.py │ ├── faq.rst │ ├── index.rst │ ├── intro.rst │ ├── limitations.rst │ ├── pybind11-logo.png │ ├── pybind11_vs_boost_python1.svg │ ├── pybind11_vs_boost_python2.svg │ ├── reference.rst │ └── release.rst │ ├── example │ ├── example.cpp │ ├── example.h │ ├── example1.cpp │ ├── example1.py │ ├── example1.ref │ ├── example10.cpp │ ├── example10.py │ ├── example10.ref │ ├── example11.cpp │ ├── example11.py │ ├── example11.ref │ ├── example12.cpp │ ├── example12.py │ ├── example12.ref │ ├── example13.cpp │ ├── example13.py │ ├── example13.ref │ ├── example14.cpp │ ├── example14.py │ ├── example14.ref │ ├── example15.cpp │ ├── example15.py │ ├── example15.ref │ ├── example16.cpp │ ├── example16.py │ ├── example16.ref │ ├── example2.cpp │ ├── example2.py │ ├── example2.ref │ ├── example3.cpp │ ├── example3.py │ ├── example3.ref │ ├── example4.cpp │ ├── example4.py │ ├── example4.ref │ ├── example5.cpp │ ├── example5.py │ ├── example5.ref │ ├── example6.cpp │ ├── example6.py │ ├── example6.ref │ ├── example7.cpp │ ├── example7.py │ ├── example7.ref │ ├── example8.cpp │ ├── example8.py │ ├── example8.ref │ ├── example9.cpp │ ├── example9.py │ ├── example9.ref │ ├── issues.cpp │ ├── issues.py │ ├── issues.ref │ ├── 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