├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── CALCPHENOTYPE.R ├── GLDS.R └── IDWAS.R ├── README.md ├── man ├── calcPhenotype.Rd ├── completeMatrix.Rd ├── doVariableSelection.Rd ├── glds.Rd ├── homogenizeData.Rd ├── idwas.Rd ├── map_cnv.Rd └── summarizeGenesByMean.Rd ├── oncoPredict.Rproj └── vignettes ├── Cell_Lines_Details.csv ├── DrugPredictions.txt ├── GDSC2_Expr_short.rds ├── GDSC2_Res.rds ├── calcPhenotype.R ├── calcPhenotype.Rmd ├── cnv.Rmd ├── cnv.txt ├── complete_matrix_output_GDSCv2.txt ├── gdscv2_drugs.txt ├── glds.Rmd ├── markerMat.txt ├── mut.Rmd ├── prostate_test_data.txt └── screened_compunds_rel_8.2.csv /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/HuangLabUMN/oncoPredict/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- 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