├── .circleci └── config.yml ├── Dockerfile ├── LICENSE ├── README.md ├── Singularity ├── Singularity.v1.1 ├── Singularity.v1.2 └── Singularity.v1.3 ├── WESpipeline.png ├── WESpipeline.svg ├── alignment.nf ├── dag.html ├── dag.png ├── deploy.sh ├── environment.yml ├── nextflow.config └── nextflow_schema.json /.circleci/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/.circleci/config.yml -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/README.md -------------------------------------------------------------------------------- /Singularity/Singularity.v1.1: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/Singularity/Singularity.v1.1 -------------------------------------------------------------------------------- /Singularity/Singularity.v1.2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/Singularity/Singularity.v1.2 -------------------------------------------------------------------------------- /Singularity/Singularity.v1.3: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/Singularity/Singularity.v1.3 -------------------------------------------------------------------------------- /WESpipeline.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/WESpipeline.png -------------------------------------------------------------------------------- /WESpipeline.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/WESpipeline.svg -------------------------------------------------------------------------------- /alignment.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/alignment.nf -------------------------------------------------------------------------------- /dag.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/dag.html -------------------------------------------------------------------------------- /dag.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/dag.png -------------------------------------------------------------------------------- /deploy.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/deploy.sh -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/environment.yml -------------------------------------------------------------------------------- /nextflow.config: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/nextflow.config -------------------------------------------------------------------------------- /nextflow_schema.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/alignment-nf/HEAD/nextflow_schema.json --------------------------------------------------------------------------------