├── .circleci └── config.yml ├── AUTHORS.txt ├── CHANGELOG.md ├── LICENSE.txt ├── README.md ├── STATUS_TABLE.png ├── STATUS_TABLE.tex ├── Singularity ├── Vagrantfile ├── alignments.png ├── bin ├── Dockerfile ├── annotate_vcf.r ├── bed_cut.r ├── glm_rob_nb.r ├── hg19_chromosomeNames2UCSC.txt ├── hg38_chromosomeNames2UCSC.txt ├── needlestack.r ├── needlestack.sh ├── plot_alignments.r └── plot_rob_nb.r ├── deploy.sh ├── docker ├── Dockerfile ├── Dockerfile_Alpine └── Dockerfile_dev ├── needlestack.nf ├── needlestack.png ├── needlestack.svg ├── nextflow.config └── reg_ex.png /.circleci/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IARCbioinfo/needlestack/HEAD/.circleci/config.yml -------------------------------------------------------------------------------- /AUTHORS.txt: -------------------------------------------------------------------------------- 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