├── CITATION.cff ├── Docker └── Readme ├── For_HPC ├── Phase1 │ ├── Phase1.batch │ ├── Phase1.c │ ├── Phase1.exe │ ├── Phase1.sh │ └── README ├── Phase2 │ ├── Phase2.batch │ ├── Phase2.c │ ├── Phase2.exe │ ├── Phase2.prerequisite.sh │ ├── Phase2.sh │ └── test ├── Phase3 │ ├── Phase3.batch │ ├── Phase3.c │ ├── Phase3.exe │ ├── Phase3.prerequisite.optimized.sh │ ├── Phase3.sh │ └── test ├── Phase4 │ ├── Phase4.batch │ ├── Phase4.c │ ├── Phase4.exe │ ├── Phase4.prerequisite.sh │ ├── Phase4.sh │ └── test └── README ├── For_Hybrid_Cluster ├── Step1_Genome_Alignment.sh ├── Step2_HaplotypeCaller.sh ├── Step3_Genotype_table_all_in_one.sh ├── Step3_prerequisite.sh ├── merge_all_using_GATK.sh └── runme_step3_prerequisite.sh ├── LICENSE ├── README.md └── Singularity └── Readme /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IBEXCluster/HPC-GVCW/HEAD/CITATION.cff 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