├── .gitignore ├── .travis.yml ├── .travis ├── deploy.sh └── docker-compose.yml ├── CONTRIBUTING.md ├── LICENSE ├── MAINTAINERS.md ├── README.md ├── bin └── depiction-models-download ├── blogs └── ibm_developer │ └── 01_depiction.ipynb ├── data ├── README.md ├── paccmann │ ├── README.md │ ├── gdsc.csv.gz │ ├── gdsc.smi │ └── gdsc_sensitivity.csv.gz └── single-cell │ ├── README.md │ ├── data.csv │ └── metadata.csv ├── depiction ├── __init__.py ├── core.py ├── interpreters │ ├── __init__.py │ ├── aix360 │ │ ├── __init__.py │ │ ├── rule_based_model.py │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── rule_based_model_test.py │ ├── alibi │ │ ├── __init__.py │ │ ├── contrastive │ │ │ ├── __init__.py │ │ │ ├── cem.py │ │ │ └── tests │ │ │ │ ├── __init__.py │ │ │ │ └── cem_test.py │ │ └── counterfactual │ │ │ ├── __init__.py │ │ │ ├── counterfactual.py │ │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── counterfactual_test.py │ ├── backprop │ │ ├── __init__.py │ │ ├── backpropeter.py │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── backpropeter_test.py │ ├── base │ │ ├── __init__.py │ │ ├── base_interpreter.py │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── base_interpreter_test.py │ └── u_wash │ │ ├── __init__.py │ │ ├── tests │ │ ├── __init__.py │ │ └── u_washer_test.py │ │ └── u_washer.py ├── models │ ├── __init__.py │ ├── base │ │ ├── __init__.py │ │ ├── base_model.py │ │ ├── binarized_model.py │ │ ├── tests │ │ │ ├── __init__.py │ │ │ ├── base_model_test.py │ │ │ └── utils_test.py │ │ └── utils.py │ ├── examples │ │ ├── __init__.py │ │ ├── celltype │ │ │ ├── __init__.py │ │ │ ├── celltype.py │ │ │ └── tests │ │ │ │ ├── __init__.py │ │ │ │ └── celltype_test.py │ │ ├── deepbind │ │ │ ├── __init__.py │ │ │ ├── deepbind.py │ │ │ └── deepbind_cli.py │ │ └── paccmann │ │ │ ├── __init__.py │ │ │ ├── core.py │ │ │ └── smiles.py │ ├── keras │ │ ├── __init__.py │ │ ├── application.py │ │ ├── core.py │ │ └── tests │ │ │ ├── __init__.py │ │ │ ├── application_test.py │ │ │ └── core_test.py │ ├── kipoi │ │ ├── __init__.py │ │ ├── core.py │ │ └── tests │ │ │ ├── __init__.py │ │ │ └── kipoi_test.py │ ├── max │ │ ├── __init__.py │ │ ├── breast_cancer_mitosis_detector.py │ │ ├── tests │ │ │ ├── __init__.py │ │ │ ├── breast_cancer_mitosis_detector_test.py │ │ │ └── toxic_comment_classifier_test.py │ │ └── toxic_comment_classifier.py │ ├── torch │ │ ├── __init__.py │ │ ├── core.py │ │ ├── tests │ │ │ ├── __init__.py │ │ │ ├── core_test.py │ │ │ └── torchvision_test.py │ │ └── torchvision.py │ └── uri │ │ ├── __init__.py │ │ ├── cache │ │ ├── __init__.py │ │ ├── cache_model.py │ │ ├── cos_model.py │ │ ├── file_system_model.py │ │ ├── http_model.py │ │ └── tests │ │ │ └── __init__.py │ │ ├── rest_api │ │ ├── __init__.py │ │ ├── max_model.py │ │ ├── rest_api_model.py │ │ └── tests │ │ │ ├── __init__.py │ │ │ ├── max_model_test.py │ │ │ └── rest_api_model_test.py │ │ ├── tests │ │ └── __init__.py │ │ └── uri_model.py └── tests │ ├── __init__.py │ └── core_test.py ├── docker ├── Dockerfile ├── docker-compose.yml └── docker-entrypoint.sh ├── environment.yml ├── examples ├── cem_mnist.py └── uwashers_imagenet.py ├── notebooks ├── Breast cancer IDC classification.ipynb ├── celltype_interpretability.ipynb ├── celltype_training.ipynb ├── deepbind.ipynb ├── kaggle_create_a_new_api_token.png ├── kaggle_go_to_your_account.png ├── model-zoo.ipynb └── paccmann.ipynb ├── requirements.txt ├── setup.py └── workshops ├── 20190909_BC2 └── README.md ├── 20191120_ODSC2019 ├── README.md ├── blog │ ├── README.md │ └── lime.png └── notebooks │ ├── celltype.ipynb │ ├── imagenet.ipynb │ └── mnist.ipynb ├── 20191121_PyPharma19 ├── README.md └── tutorial_colab.ipynb └── 20200125_AMLD2020 ├── README.md └── notebooks ├── breast_cancer_idc_classification.ipynb ├── celltype_interpretability.ipynb ├── deepbind.ipynb ├── kaggle_create_a_new_api_token.png ├── kaggle_go_to_your_account.png └── paccmann.ipynb /.gitignore: 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