├── LICENSE ├── README.md ├── data ├── .pdb_pre.py.swp ├── README.md ├── determine_ss.py ├── domain_list.txt ├── example │ ├── 1aj4A00-2-161 │ ├── 1bzqK00-801-924 │ ├── 1ge0A00-1-130 │ └── domain_list.txt ├── fold2seq2.png ├── fold_feat_gen.py ├── fold_features │ └── 1ab0A00-1-131.npy ├── pdb_lists │ ├── id_domain.txt │ ├── od_domain.txt │ ├── train_domain.txt │ └── val_domain.txt ├── pdb_pre.py └── ss_dense_gen.py ├── environment.yml ├── fold2seq1.png ├── fold2seq3.png └── src ├── Utils ├── __pycache__ │ ├── amino_acid.cpython-37.pyc │ ├── amino_acid.cpython-38.pyc │ ├── model_statistics.cpython-37.pyc │ └── model_statistics.cpython-38.pyc ├── amino_acid.py ├── hparam.py └── model_statistics.py ├── fold_encoder.py ├── generator.py ├── inference.py ├── seq_decoder.py └── train.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IBM/fold2seq/HEAD/LICENSE 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