├── .coveragerc ├── .flake8rc ├── .gitattributes ├── .gitignore ├── .isort.cfg ├── .pylintrc ├── CHANGELOG.md ├── LICENSE ├── MANIFEST.in ├── Makefile ├── Makefile.conf ├── README.md ├── TODO.md ├── docs ├── api │ ├── compiler │ │ └── sparql │ │ │ ├── builder.md │ │ │ ├── compiler.md │ │ │ └── mapping │ │ │ ├── dbpedia.md │ │ │ ├── europa.md │ │ │ ├── factgrid.md │ │ │ ├── mapping.md │ │ │ ├── pubchem.md │ │ │ ├── uniprot.md │ │ │ └── wikidata.md │ ├── context.md │ ├── engine.md │ ├── model │ │ ├── collection │ │ │ ├── graph.md │ │ │ ├── pair.md │ │ │ └── set.md │ │ ├── filter.md │ │ ├── kif_object.md │ │ ├── snak │ │ │ ├── no_value_snak.md │ │ │ ├── snak.md │ │ │ ├── some_value_snak.md │ │ │ └── value_snak.md │ │ ├── statement │ │ │ ├── annotated_statement.md │ │ │ └── statement.md │ │ ├── statement_annotations │ │ │ ├── qualifier_record.md │ │ │ ├── rank.md │ │ │ └── reference_record.md │ │ ├── term │ │ │ ├── closed_term.md │ │ │ ├── open_term │ │ │ │ ├── open_term.md │ │ │ │ ├── template.md │ │ │ │ └── variable.md │ │ │ └── term.md │ │ └── value │ │ │ ├── data_value │ │ │ ├── data_value.md │ │ │ ├── external_id.md │ │ │ ├── iri.md │ │ │ ├── quantity.md │ │ │ ├── string.md │ │ │ ├── text.md │ │ │ └── time.md │ │ │ ├── entity │ │ │ ├── entity.md │ │ │ ├── item.md │ │ │ ├── lexeme.md │ │ │ ├── property.md │ │ │ └── pseudo_property.md │ │ │ └── value.md │ ├── overview.md │ ├── search │ │ └── abc.md │ ├── store │ │ ├── abc.md │ │ ├── mixer.md │ │ └── sparql.md │ └── vocabulary │ │ ├── db.md │ │ ├── eu.md │ │ ├── fg.md │ │ ├── pc.md │ │ ├── up.md │ │ └── wd.md ├── css │ └── custom.css ├── guides │ ├── async.md │ ├── cli.md │ ├── context.md │ ├── data_model.md │ ├── overview.md │ └── rdf.md ├── img │ ├── kif-b.svg │ ├── kif-boxed.svg │ ├── kif-bw.svg │ ├── kif-w.svg │ └── kif-wb.svg ├── index.md └── tutorial.md ├── examples ├── .gitignore ├── async.ipynb ├── dbpedia.ipynb ├── pubchem.ipynb ├── quickstart.ipynb ├── rdf_encoding.ipynb ├── rdfox.ipynb ├── recipes.ipynb ├── show.py ├── sparql_mapping.ipynb ├── store_plugin.ipynb ├── unification.ipynb └── wikidata.ipynb ├── kif_lib ├── __init__.py ├── __version__.py ├── cache.py ├── cli.py ├── codec │ ├── __init__.py │ ├── dot.py │ ├── markdown.py │ ├── options.py │ ├── rdf │ │ ├── __init__.py │ │ ├── encoder.py │ │ └── options.py │ └── sparql │ │ ├── __init__.py │ │ └── decoder.py ├── compiler │ ├── __init__.py │ ├── compiler.py │ ├── options.py │ └── sparql │ │ ├── __init__.py │ │ ├── builder.py │ │ ├── compiler.py │ │ ├── filter_compiler.py │ │ ├── mapping │ │ ├── __init__.py │ │ ├── dbpedia.py │ │ ├── dbpedia_options.py │ │ ├── europa.py │ │ ├── europa_options.py │ │ ├── factgrid.py │ │ ├── factgrid_options.py │ │ ├── mapping.py │ │ ├── options.py │ │ ├── pubchem.py │ │ ├── pubchem_options.py │ │ ├── uniprot.py │ │ ├── uniprot_options.py │ │ ├── wikidata.py │ │ ├── wikidata_options.py │ │ ├── yago.py │ │ └── yago_options.py │ │ ├── options.py │ │ ├── results.py │ │ └── substitution.py ├── context │ ├── __init__.py │ ├── context.py │ ├── options.py │ ├── registry.py │ └── section.py ├── engine │ ├── __init__.py │ ├── abc.py │ └── options.py ├── error.py ├── functools.py ├── itertools.py ├── model │ ├── __init__.py │ ├── constraint.py │ ├── filter.py │ ├── fingerprint.py │ ├── flags.py │ ├── graph.py │ ├── kif_object.py │ ├── object.py │ ├── options.py │ ├── pair │ │ ├── __init__.py │ │ ├── closed_term_pair.py │ │ └── value_pair.py │ ├── path.py │ ├── pattern.py │ ├── rank.py │ ├── set │ │ ├── __init__.py │ │ ├── closed_term_set.py │ │ ├── reference_record_set.py │ │ └── snak_set.py │ ├── snak │ │ ├── __init__.py │ │ ├── no_value_snak.py │ │ ├── snak.py │ │ ├── some_value_snak.py │ │ └── value_snak.py │ ├── statement.py │ ├── term │ │ ├── __init__.py │ │ ├── template.py │ │ ├── term.py │ │ ├── unification.py │ │ └── variable.py │ └── value │ │ ├── __init__.py │ │ ├── data_value.py │ │ ├── datatype.py │ │ ├── deep_data_value.py │ │ ├── entity.py │ │ ├── external_id.py │ │ ├── iri.py │ │ ├── item.py │ │ ├── lexeme.py │ │ ├── options.py │ │ ├── property.py │ │ ├── pseudo_property.py │ │ ├── quantity.py │ │ ├── shallow_data_value.py │ │ ├── string.py │ │ ├── text.py │ │ ├── time.py │ │ └── value.py ├── namespace │ ├── __init__.py │ ├── cito.py │ ├── dbpedia.py │ ├── dcat.py │ ├── europa.py │ ├── euvoc.py │ ├── factgrid.py │ ├── go.py │ ├── obo.py │ ├── ontolex.py │ ├── patent.py │ ├── prov.py │ ├── pubchem.py │ ├── schema.py │ ├── semsci.py │ ├── uniprot.py │ ├── vcard.py │ ├── wikibase.py │ ├── wikidata.py │ └── yago.py ├── py.typed ├── rdflib.py ├── search │ ├── __init__.py │ ├── abc.py │ ├── dbpedia_ddgs.py │ ├── dbpedia_lookup.py │ ├── ddgs.py │ ├── empty.py │ ├── httpx.py │ ├── options.py │ ├── pubchem_ddgs.py │ ├── pubchem_pug.py │ ├── wikidata_ddgs.py │ ├── wikidata_rest.py │ └── wikidata_wapi.py ├── store │ ├── __init__.py │ ├── abc.py │ ├── empty.py │ ├── memory.py │ ├── mixer.py │ ├── options.py │ ├── reader │ │ ├── __init__.py │ │ ├── csv.py │ │ ├── json.py │ │ └── reader.py │ └── sparql │ │ ├── __init__.py │ │ ├── httpx.py │ │ ├── jena.py │ │ ├── jena_jpype.py │ │ ├── qlever.py │ │ ├── qlever_process.py │ │ ├── rdf.py │ │ ├── rdflib.py │ │ ├── rdfox.py │ │ ├── rdfox_pipe.py │ │ ├── sparql.py │ │ └── sparql_core.py ├── str2id.py ├── typing.py └── vocabulary │ ├── __init__.py │ ├── db │ ├── __init__.py │ ├── item.py │ ├── prelude.py │ └── property.py │ ├── eu │ ├── __init__.py │ ├── item.py │ └── prelude.py │ ├── fg │ ├── __init__.py │ ├── item.py │ ├── prelude.py │ └── property.py │ ├── options.py │ ├── pc │ ├── __init__.py │ ├── item.py │ ├── prelude.py │ └── property.py │ ├── up │ ├── __init__.py │ ├── item.py │ └── prelude.py │ ├── wd │ ├── __init__.py │ ├── item.py │ ├── item_continent.py │ ├── item_country.py │ ├── item_solar_system.py │ ├── prelude.py │ └── property.py │ └── yago │ ├── __init__.py │ ├── item.py │ └── prelude.py ├── mkdocs.yml ├── pyproject.toml ├── pyrightconfig.json ├── pytest.ini ├── setup.py ├── tests ├── __init__.py ├── codec │ ├── __init__.py │ ├── test_json.py │ ├── test_markdown.py │ ├── test_rdf.py │ └── test_sparql.py ├── compiler │ ├── __init__.py │ └── sparql │ │ ├── __init__.py │ │ ├── mapping │ │ ├── __init__.py │ │ ├── test_mapping.py │ │ ├── test_pubchem_options.py │ │ └── test_wikidata_options.py │ │ └── test_builder.py ├── context │ ├── __init__.py │ ├── registry │ │ ├── __init__.py │ │ ├── test_entity_registry.py │ │ └── test_iri_registry.py │ ├── test_context.py │ ├── test_options.py │ └── test_section.py ├── data │ ├── adam.ttl │ ├── andar.ttl │ ├── benzene-dbpedia.ttl │ ├── benzene-pubchem.ttl │ ├── benzene.csv │ ├── benzene.json │ ├── benzene.jsonl │ ├── benzene.ttl │ ├── brazil.ttl │ ├── dalton.dlog │ ├── has_part.dlog │ ├── has_part.ttl │ ├── instance_of.ttl │ └── paint.ttl ├── model │ ├── __init__.py │ ├── filter │ │ ├── __init__.py │ │ ├── test_filter.py │ │ ├── test_filter_datatype_mask.py │ │ ├── test_filter_property_mask.py │ │ ├── test_filter_rank_mask.py │ │ └── test_filter_snak_mask.py │ ├── fingerprint │ │ ├── __init__.py │ │ ├── test_and_fingerprint.py │ │ ├── test_atomic_fingerprint.py │ │ ├── test_compound_fingerprint.py │ │ ├── test_converse_snak_fingerprint.py │ │ ├── test_empty_fingerprint.py │ │ ├── test_fingerprint.py │ │ ├── test_full_fingerprint.py │ │ ├── test_or_fingerprint.py │ │ ├── test_snak_fingerprint.py │ │ └── test_value_fingerprint.py │ ├── graph │ │ ├── __init__.py │ │ ├── test_graph.py │ │ └── test_graph_variable.py │ ├── pair │ │ ├── __init__.py │ │ ├── test_value_pair.py │ │ └── test_value_pair_variable.py │ ├── rank │ │ ├── __init__.py │ │ ├── test_deprecated_rank.py │ │ ├── test_normal_rank.py │ │ ├── test_preferred_rank.py │ │ ├── test_rank.py │ │ └── test_rank_variable.py │ ├── set │ │ ├── __init__.py │ │ ├── test_qualifier_record.py │ │ ├── test_qualifier_record_variable.py │ │ ├── test_reference_record.py │ │ ├── test_reference_record_set.py │ │ ├── test_reference_record_variable.py │ │ ├── test_snak_set.py │ │ └── test_snak_set_variable.py │ ├── snak │ │ ├── __init__.py │ │ ├── test_no_value_snak.py │ │ ├── test_no_value_snak_template.py │ │ ├── test_no_value_snak_variable.py │ │ ├── test_snak.py │ │ ├── test_snak_template.py │ │ ├── test_snak_variable.py │ │ ├── test_some_value_snak.py │ │ ├── test_some_value_snak_template.py │ │ ├── test_some_value_snak_variable.py │ │ ├── test_value_snak.py │ │ ├── test_value_snak_template.py │ │ └── test_value_snak_variable.py │ ├── statement │ │ ├── __init__.py │ │ ├── test_annotated_statement.py │ │ ├── test_annotated_statement_template.py │ │ ├── test_annotated_statement_variable.py │ │ ├── test_statement.py │ │ ├── test_statement_template.py │ │ └── test_statement_variable.py │ ├── term │ │ ├── __init__.py │ │ ├── test_closed_term.py │ │ ├── test_open_term.py │ │ ├── test_template.py │ │ ├── test_term.py │ │ ├── test_term_unification.py │ │ └── test_variable.py │ ├── test_kif_object.py │ ├── test_object.py │ ├── test_options.py │ └── value │ │ ├── __init__.py │ │ ├── pseudo_property │ │ ├── __init__.py │ │ ├── test_alias_property.py │ │ ├── test_description_property.py │ │ ├── test_label_property.py │ │ ├── test_language_property.py │ │ ├── test_lemma_property.py │ │ ├── test_lexical_category_property.py │ │ └── test_pseudo_property.py │ │ ├── test_data_value.py │ │ ├── test_data_value_template.py │ │ ├── test_data_value_variable.py │ │ ├── test_datatype.py │ │ ├── test_datatype_variable.py │ │ ├── test_deep_data_value.py │ │ ├── test_deep_data_value_template.py │ │ ├── test_deep_data_value_variable.py │ │ ├── test_entity.py │ │ ├── test_entity_template.py │ │ ├── test_entity_variable.py │ │ ├── test_external_id.py │ │ ├── test_external_id_datatype.py │ │ ├── test_external_id_template.py │ │ ├── test_external_id_variable.py │ │ ├── test_iri.py │ │ ├── test_iri_datatype.py │ │ ├── test_iri_template.py │ │ ├── test_iri_variable.py │ │ ├── test_item.py │ │ ├── test_item_datatype.py │ │ ├── test_item_template.py │ │ ├── test_item_variable.py │ │ ├── test_lexeme.py │ │ ├── test_lexeme_datatype.py │ │ ├── test_lexeme_template.py │ │ ├── test_lexeme_variable.py │ │ ├── test_options.py │ │ ├── test_property.py │ │ ├── test_property_datatype.py │ │ ├── test_property_template.py │ │ ├── test_property_variable.py │ │ ├── test_quantity.py │ │ ├── test_quantity_datatype.py │ │ ├── test_quantity_template.py │ │ ├── test_quantity_variable.py │ │ ├── test_shallow_data_value.py │ │ ├── test_shallow_data_value_template.py │ │ ├── test_shallow_data_value_variable.py │ │ ├── test_string.py │ │ ├── test_string_datatype.py │ │ ├── test_string_template.py │ │ ├── test_string_variable.py │ │ ├── test_text.py │ │ ├── test_text_datatype.py │ │ ├── test_text_options.py │ │ ├── test_text_template.py │ │ ├── test_text_variable.py │ │ ├── test_time.py │ │ ├── test_time_datatype.py │ │ ├── test_time_template.py │ │ ├── test_time_variable.py │ │ ├── test_value.py │ │ ├── test_value_template.py │ │ └── test_value_variable.py ├── namespace │ ├── __init__.py │ └── test_wikidata.py ├── search │ ├── __init__.py │ ├── dbpedia_ddgs │ │ ├── __init__.py │ │ └── test_options.py │ ├── dbpedia_lookup │ │ ├── __init__.py │ │ └── test_options.py │ ├── ddgs │ │ ├── __init__.py │ │ └── test_options.py │ ├── empty │ │ ├── __init__.py │ │ └── test_options.py │ ├── httpx │ │ ├── __init__.py │ │ └── test_options.py │ ├── pubchem_ddgs │ │ ├── __init__.py │ │ └── test_options.py │ ├── test_options.py │ ├── wikidata_ddgs │ │ ├── __init__.py │ │ └── test_options.py │ └── wikidata_wapi │ │ ├── __init__.py │ │ └── test_options.py ├── store │ ├── __init__.py │ ├── csv_reader │ │ ├── __init__.py │ │ └── test_filter.py │ ├── dbpedia_rdf │ │ ├── __init__.py │ │ └── test_filter.py │ ├── dbpedia_sparql │ │ ├── __init__.py │ │ ├── filter │ │ │ ├── __init__.py │ │ │ ├── test_subject_path_fp.py │ │ │ └── test_subject_value_fp.py │ │ ├── test_filter.py │ │ └── test_wd_label.py │ ├── empty │ │ ├── __init__.py │ │ ├── test_contains.py │ │ ├── test_count.py │ │ └── test_options.py │ ├── json_reader │ │ ├── __init__.py │ │ └── test_filter.py │ ├── jsonl_reader │ │ ├── __init__.py │ │ └── test_filter.py │ ├── memory │ │ ├── __init__.py │ │ └── test_filter.py │ ├── mixer │ │ ├── __init__.py │ │ ├── test_count.py │ │ ├── test_filter.py │ │ └── test_options.py │ ├── pubchem_rdf │ │ ├── __init__.py │ │ ├── test_count.py │ │ └── test_filter.py │ ├── pubchem_sparql │ │ ├── __init__.py │ │ ├── test_filter.py │ │ ├── test_pc_IUPAC_name.py │ │ ├── test_pc_isotope_atom_count.py │ │ ├── test_wd_CAS_Registry_Number.py │ │ ├── test_wd_ChEBI_ID.py │ │ ├── test_wd_ChEMBL_ID.py │ │ ├── test_wd_InChI.py │ │ ├── test_wd_InChIKey.py │ │ ├── test_wd_PubChem_CID.py │ │ ├── test_wd_alias.py │ │ ├── test_wd_author_name_string.py │ │ ├── test_wd_canonical_SMILES.py │ │ ├── test_wd_chemical_formula.py │ │ ├── test_wd_description.py │ │ ├── test_wd_has_part.py │ │ ├── test_wd_instance_of.py │ │ ├── test_wd_isomeric_SMILES.py │ │ ├── test_wd_label.py │ │ ├── test_wd_legal_status_medicine.py │ │ ├── test_wd_main_subject.py │ │ ├── test_wd_manufacturer.py │ │ ├── test_wd_mass.py │ │ ├── test_wd_material_produced.py │ │ ├── test_wd_official_website.py │ │ ├── test_wd_part_of.py │ │ ├── test_wd_partition_coefficient_water_octanol.py │ │ ├── test_wd_patent_number.py │ │ ├── test_wd_publication_date.py │ │ ├── test_wd_said_to_be_the_same.py │ │ ├── test_wd_stereoisomer_of.py │ │ └── test_wd_title.py │ ├── sparql │ │ ├── __init__.py │ │ ├── test.py │ │ └── test_options.py │ ├── sparql_jena │ │ ├── __init__.py │ │ └── test_filter.py │ ├── sparql_qlever │ │ ├── __init__.py │ │ └── test_filter.py │ ├── sparql_rdflib │ │ ├── __init__.py │ │ └── test_filter.py │ ├── sparql_rdfox │ │ ├── __init__.py │ │ └── test_filter.py │ ├── test_error.py │ ├── test_options.py │ ├── test_store_options.py │ ├── wdqs │ │ ├── __init__.py │ │ ├── filter │ │ │ ├── __init__.py │ │ │ ├── test_subject_path_fp.py │ │ │ ├── test_subject_snak_fp.py │ │ │ ├── test_subject_value_fp.py │ │ │ ├── test_value_or_fp.py │ │ │ └── test_value_value_fp.py │ │ ├── test_filter.py │ │ └── test_wd_type.py │ └── wikidata_rdf │ │ ├── __init__.py │ │ ├── filter │ │ ├── __init__.py │ │ ├── test_subject_snak_fp.py │ │ ├── test_subject_value_fp.py │ │ └── test_value_value_fp.py │ │ ├── test_base_filter.py │ │ ├── test_contains.py │ │ ├── test_count.py │ │ └── test_filter.py ├── test_cache.py ├── tests │ ├── __init__.py │ ├── model │ │ ├── __init__.py │ │ ├── fingerprint.py │ │ ├── kif_object.py │ │ ├── pair.py │ │ ├── rank.py │ │ ├── set.py │ │ ├── snak.py │ │ ├── statement.py │ │ ├── term │ │ │ ├── __init__.py │ │ │ ├── template.py │ │ │ ├── term.py │ │ │ └── variable.py │ │ └── value │ │ │ ├── __init__.py │ │ │ ├── data_value.py │ │ │ ├── datatype.py │ │ │ ├── deep_data_value.py │ │ │ ├── entity.py │ │ │ ├── shallow_data_value.py │ │ │ └── value.py │ └── tests.py └── vocabulary │ ├── __init__.py │ ├── test_db_options.py │ ├── test_eu_options.py │ ├── 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