├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── HISTORY.rst ├── LICENSE ├── NAMESPACE ├── PCSF.Rproj ├── R ├── PCSF.R ├── PCSF_rand.R ├── RcppExports.R ├── call_enr.R ├── construct_interactome.R ├── data_interactome.R ├── data_phosphoproteomics.R ├── enrichment_analysis.R ├── plot.PCSF.R └── plot.PCSFe.R ├── README.md ├── data ├── STRING.rda └── Tgfb_phospho.rda ├── man ├── PCSF.Rd ├── PCSF_rand.Rd ├── STRING.Rd ├── Tgfb_phospho.Rd ├── call_enr.Rd ├── call_sr.Rd ├── construct_interactome.Rd ├── enrichment_analysis.Rd ├── plot.PCSF.Rd └── plot.PCSFe.Rd ├── src ├── PCSF.cpp └── RcppExports.cpp └── vignettes ├── PCSF-manual.Rmd ├── PCSF-manual.html ├── PCSF-ref-manual.pdf └── ref.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IOR-Bioinformatics/PCSF/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: 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