├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── assets └── logo.png ├── docs ├── Docs_for_importing_new_patient_data.pdf ├── How_to_Add_Your_Trial.md ├── How_to_connect_to_University_VPN.md ├── README.md ├── User_Guide_Data_import.pdf ├── checklist for new trial.html ├── checklist for new trial.svg ├── deployment_guide │ ├── HOWTO_VPN_from_AWS_EC2_instance_to_the_University.md │ ├── HOW_TO_Add_new_patient_information.md │ ├── HOW_TO_Applying_for_Access.md │ ├── Local_Deployment_Guide.md │ ├── Makefile │ ├── User_Guide_Data_import.md │ ├── conf.py │ ├── images │ │ ├── Content_Uploader_Profile_Selection.png │ │ ├── Content_Uploader_Select_Host.png │ │ ├── Content_Uploader_add_fraction.png │ │ ├── Content_Uploader_add_patient.png │ │ ├── Content_Uploader_main_screen_v2.png │ │ ├── Content_Uploader_no_patient_match.png │ │ ├── Data_Upload_and_approval_process.png │ │ ├── Data_importer_role.png │ │ ├── Download_and_Install_NuGet_package.png │ │ ├── FS_Scrubbing_Process.png │ │ ├── FS_scrubbing_multi_path_options.png │ │ ├── FS_scrubbing_regular_expressions.png │ │ ├── Managing_NuGet_Packages_VisualStudio.png │ │ ├── Search_NuGet_package.png │ │ ├── admin_console_design.png │ │ ├── admin_console_login.png │ │ ├── admin_console_upload_import.png │ │ ├── admin_console_upload_list.png │ │ ├── apply_access_token.png │ │ ├── architecture.png │ │ ├── content_uploader_auth.png │ │ ├── content_uploader_main_screen.png │ │ └── deployment_scenario.png │ ├── index.rst │ └── make.bat └── trial_folder_structure │ ├── CHIRP.json │ ├── CHIRP.md │ ├── LARK.json │ ├── LEARN.json │ ├── MAGIK, VALKIM folder structure.txt │ ├── OPTIMAL.md │ ├── RAVENTA.json │ ├── README.md │ ├── ROCK-RT.md │ ├── SPANC.json │ ├── SPANC.md │ ├── SPARK_LARK.md │ ├── VALKIM.json │ ├── VENTURE folder structure.txt │ ├── VENTURE.json │ └── template.json ├── example ├── LEARN_test │ ├── LEARN.json │ ├── patient_fraction.csv │ └── patient_info.csv └── README.md ├── requirements.txt ├── scripts ├── db │ ├── auth_db_init.sql │ ├── auth_db_schema.sql │ ├── db_init.sql │ ├── db_schema.sql │ ├── update_auth_db_v1.sql │ ├── update_db_schema_v1.sql │ └── upload_db.sql ├── db_backup │ ├── .gitignore │ ├── backup.py │ ├── config.py │ └── templates │ │ └── local_settings_template.json ├── folder_template │ └── folderTemplateCreator.py └── service │ ├── adminConsole.service │ ├── admin_service.sh │ ├── data_service.sh │ ├── install_service.bat │ └── learndb.service ├── src ├── KIM-analysis-Usercase │ └── notebooks │ │ ├── Plot DVH Doses.ipynb │ │ ├── Plot Marker Locations.ipynb │ │ └── requirements.txt ├── admin_console │ ├── .gitignore │ ├── AuthManagement.py │ ├── CustomTypes.py │ ├── DataImporter.py │ ├── DatabaseAdapter.py │ ├── Dockerfile │ ├── UploadManager.py │ ├── adminApp.py │ ├── config.py │ ├── filetype_db_mapping.json │ ├── gui │ │ └── web_gui │ │ │ ├── assets │ │ │ └── template.json │ │ │ ├── base_layout.html │ │ │ ├── create_new_center.html │ │ │ ├── create_new_trial.html │ │ │ ├── css │ │ │ └── light_style.css │ │ │ ├── images │ │ │ └── admin_console_logo.png │ │ │ ├── js │ │ │ ├── ui_center_utils.js │ │ │ ├── ui_trial_utils.js │ │ │ └── ui_utils.js │ │ │ ├── login.html │ │ │ ├── upload_details.html │ │ │ ├── uploads.html │ │ │ └── user_tokens.html │ ├── readme.md │ ├── requirements.txt │ └── templates │ │ └── local_settings_template.json ├── content_uploader │ ├── ContentClient.ui │ ├── ContentUploader.py │ ├── ContentViewer.py │ ├── ImagingDBClient │ │ ├── Clients.py │ │ ├── __init__.py │ │ ├── cachemgmt.py │ │ └── encdec.py │ ├── OnedriveClient.py │ ├── ProfileManager.py │ ├── README.md │ ├── build_bins.bat │ ├── config.py │ ├── folderExp.py │ ├── requirements.txt │ ├── templates │ │ └── profile_template.json │ └── testdata │ │ └── test.profile ├── data_service │ ├── .gitignore │ ├── .platform │ │ └── nginx │ │ │ └── conf.d │ │ │ ├── 00_myconf.config │ │ │ └── proxy.conf │ ├── AccessManager.py │ ├── ClinicalTrials.py │ ├── ContentManager.py │ ├── Dockerfile │ ├── ProfileCreator.py │ ├── README.md │ ├── build_win_service.bat │ ├── config.py │ ├── dataApp.py │ ├── dbconnector.py │ ├── diagnostics.py │ ├── frontend_api │ │ ├── __init__.py │ │ ├── filesystemManagement.py │ │ ├── fractionInfoManagement.py │ │ ├── generalApi.py │ │ ├── patientInfoManagement.py │ │ ├── prescriptionInfoManagement.py │ │ ├── service │ │ │ ├── __init__.py │ │ │ ├── filesystem.py │ │ │ ├── fraction.py │ │ │ ├── general.py │ │ │ ├── patient.py │ │ │ ├── prescription.py │ │ │ ├── user.py │ │ │ └── util.py │ │ └── userManagement.py │ ├── gui │ │ └── web_gui │ │ │ ├── apis.html │ │ │ ├── missing_data.html │ │ │ ├── token_apply.html │ │ │ ├── token_download.html │ │ │ ├── uploads.html │ │ │ └── welcome.html │ ├── requirements.txt │ ├── resources │ │ ├── add_resource_fields_map.json │ │ ├── api_mapping.json │ │ ├── patient_fraction_template.csv │ │ ├── patient_info_template.csv │ │ └── template.json │ ├── templates │ │ ├── file_categories_template.json │ │ ├── local_settings_template.json │ │ ├── login_profile_template.json │ │ ├── path_SPARK_example.json │ │ ├── paths_template.json │ │ ├── template.json │ │ └── upload_paths_template.json │ ├── test_application.py │ ├── tests │ │ └── sample_tokenfile.txt │ ├── utils.py │ └── winservice.py └── db_updater │ ├── DVHParser.py │ ├── FilesystemScrubber.py │ ├── PatientDataReader.py │ ├── README.md │ ├── data │ ├── .gitignore │ ├── README.md │ └── templates │ │ ├── README.md │ │ ├── local_settings_template.json │ │ └── new_patient_data_template.json │ ├── generateSQL.sh │ ├── newFilesystemScrubber.py │ ├── read.py │ └── sqlGenerator.py └── workspace.code-workspace /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Image-X-Institute/The-Real-Time-Imaging-Database/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: 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