├── .github ├── copilot-instructions.md └── workflows │ ├── deploy-docs.yml │ ├── deploy-image.yml │ ├── publish-to-pypi.yml │ ├── run-tests.yml │ └── validate-zenodo.yml ├── .gitignore ├── .zenodo.json ├── CITATION.cff ├── Dockerfile ├── LICENSE ├── README.md ├── apptainer.def ├── docs ├── acknowledgments.md ├── apptainer.md ├── assets │ ├── hawaii.geojson │ ├── hawaii_bird_families_list.txt │ ├── hawaii_bird_family_bins_list.csv │ └── hawaii_bird_species_list.txt ├── command-line-help.md ├── command-line-tutorial.md ├── css │ └── mkdocstrings.css ├── docker.md ├── geo-restricted-taxa.md ├── index.md ├── python-api.md └── python-tutorial.md ├── examples ├── FewShotRidgeClassifier.ipynb ├── FewShotSVM.ipynb ├── FewShotSimpleShot.ipynb ├── GradCamExperiment.ipynb ├── PredictImages.ipynb ├── TOL-Subsetting.ipynb └── iNaturalistPredict.ipynb ├── mkdocs.yml ├── pyproject.toml ├── src └── bioclip │ ├── __about__.py │ ├── __init__.py │ ├── __main__.py │ ├── predict.py │ └── recorder.py └── 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