├── .flake8 ├── .gitignore ├── .gitmodules ├── .rspec ├── Endpoint └── siim-dicomweb-endpoint.json ├── Gemfile ├── Gemfile.lock ├── LICENSE ├── Medication └── levothyroxine.medication.json ├── Organization └── siim.organization.json ├── Practitioner └── siim_md.practitioner.json ├── README.md ├── contribute ├── diagnosticReport-template.txt ├── generate-fhir-from-dicom.py ├── imagingStudy-template.txt └── patient-template.txt ├── create_mhd.rb ├── document_reference.json.erb ├── fhir_server.yml.dist ├── isort.cfg ├── poetry.lock ├── poetry.toml ├── pyproject.toml ├── requirements.txt ├── scripts └── siimhack_dataset_toolbox │ ├── .gitignore │ ├── CHANGELOG.md │ ├── Dockerfile │ ├── LICENSE.md │ ├── README.md │ ├── default_siim_hackathon_dataset_request.yaml │ ├── requirements.txt │ ├── setup.cfg │ ├── setup.py │ └── siimhack_dataset_toolbox │ ├── __init__.py │ ├── config_default.py │ ├── dicom_fhir_bridge.py │ ├── dicom_tag_modifier.py │ ├── dicom_vr_faker.py │ └── dicom_vrs.py ├── siim_andy_tcga-50-5072 ├── Condition │ └── condition-5072.json ├── DiagnosticReport │ ├── diagnostic_report.A20210527083803.json │ ├── diagnostic_report.a5748109426316800.json │ ├── diagnostic_report.a5748109426316801.json │ ├── diagnostic_report.a5748109426316802.json │ ├── diagnostic_report.a5748109426316804.json │ ├── diagnostic_report_5072.ct499.json │ ├── diagnostic_report_5072.nm267.json │ ├── diagnostic_report_5072.petct644.json │ └── diagnostic_report_5072.petct959.json ├── ImagingSelection │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.288546507090256430792536709588.3.78.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.288546507090256430792536709588.3.89.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.339372202011004731829363267423.3.12.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.339372202011004731829363267423.3.18.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.339372202011004731829363267423.3.22.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.339372202011004731829363267423.3.23.json │ └── imaging_selection.1.3.6.1.4.1.14519.5.2.1.6450.9002.583820547490466057447627106523.3.85.json ├── ImagingStudy │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6450.9002.159774597133442057476528099963.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6450.9002.288546507090256430792536709588.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6450.9002.339372202011004731829363267423.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6450.9002.583820547490466057447627106523.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1117.5035.1620319789811.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1132.4202.1620335303953.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1138.6433.1620341053601.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1143.1798.1620345777706.1.2.1.json │ └── imaging_study.2.25.293755960071087971037154104444119427201.json ├── Patient │ └── patient.andy.tcga-50-5072.json ├── ct-7423.txt ├── nm-9963.txt ├── petct-6523.txt └── petct-9588.txt ├── siim_bibata-prostate ├── DiagnosticReport-RadDiagnosticReport0.json ├── DiagnosticReport-eCCDiagnosticReport0.json ├── Observation-PathEPE.json ├── Observation-PathGleason.json ├── Observation-PathLesionSize.json ├── Observation-PathObsSeminalVesicleInvasion.json ├── Observation-RadEPE.json ├── Observation-RadGleason.json ├── Observation-RadImpression.json ├── Observation-RadLeasionSize.json ├── Observation-RadPIRADS.json ├── Observation-RadSeminalVesicleInvasion.json ├── Patient-BibataAmadou.json ├── Practitioner-KikiPractitioner.json ├── Practitioner-LauraPractitioner.json ├── PractitionerRole-KikiPractitionerRole.json ├── PractitionerRole-LauraPractitionerRole.json ├── bibata.md ├── diagnostic_report.A20210527083404.json └── imaging_study.2.25.299459841081210795766196429029719697528.json ├── siim_james-opth-002 ├── Condition │ └── condition.macularedema.json ├── DiagnosticReport │ ├── diagnostic_report.A20210527084134.json │ └── diagnostic_report.a10653.json ├── ImagingStudy │ ├── imaging_study.1.2.276.0.75.2.5.30.25.1.120111080847834.160607927836.260193337.json │ └── imaging_study.2.25.65957032953333047834795908969375420851.json └── Patient │ └── patient.opth-002.json ├── siim_jean-radiotherapy-001 ├── DiagnosticReport │ └── diagnostic_report.A20210527084352.json ├── ImagingStudy │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.5099.8010.217836670708542506360829799868.json │ └── imaging_study.2.25.296845492630076945453047486810533140602.json └── Patient │ └── patient.radiotherapy-001.json ├── siim_jessica-opth-001 ├── Condition │ ├── condition.diabetes.json │ └── condition.hypertensiondiabetes.json ├── DiagnosticReport │ ├── diagnostic_report.A20210527084753.json │ └── diagnostic_report.a1000051.json ├── ImagingStudy │ ├── imaging_study.1.2.276.0.75.2.2.70.0.1.190321143715254.9210271859845.1000051.json │ └── imaging_study.2.25.269859997690759739055099378767846712697.json └── Patient │ └── patient.opth-001.json ├── siim_joe-tcga-17-z058 ├── Condition │ └── condition.z058.json ├── DiagnosticReport │ ├── diagnostic_report.A20210527084809.json │ ├── diagnostic_report.a9488265223658752.json │ ├── diagnostic_report.a9488265223658753.json │ ├── diagnostic_report.a9488265223658754.json │ ├── diagnostic_report.z058.ct0858.json │ ├── diagnostic_report.z058.ct3105.json │ ├── diagnostic_report.z058.ct3733.json │ ├── diagnostic_report.z058.ct5570.json │ ├── diagnostic_report.z058.path.json │ └── diagnostic_report.z058.pt5759.json ├── ImagingSelection │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.5.36.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.5.42.json │ ├── imaging_selection.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.5.6.json │ └── imaging_selection.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.6.13.json ├── ImagingStudy │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.7777.9002.198875685720513246512710453733.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.7777.9002.230343245760929624980341715570.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.7777.9002.695251996732711525695705170858.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.7777.9002.701296064147831952903543555759.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105-keyimages.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1116.1432.1620319148179.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1145.4479.1620348174276.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1147.1273.1620349952573.1.2.1.json │ └── imaging_study.2.25.2794218761846424444317355673683954585.json ├── Patient │ └── patient.z058.json ├── Specimen │ └── specimen.z058.json ├── ct-0858.txt ├── ct-3105.txt ├── ct-3115.txt ├── ct-3733.txt ├── ct-5570.txt └── pet-5759.txt ├── siim_neela-tcga-ba-4077 ├── Condition │ └── condition-4077.json ├── DiagnosticReport │ ├── diagnostic_report.D19-1002.json │ ├── diagnostic_report.a4136373320.json │ ├── diagnostic_report.a7516395503667574.json │ ├── diagnostic_report.a7516395503667575.json │ ├── diagnostic_report.a7516395503667576.json │ ├── diagnostic_report.a7516395503667577.json │ ├── diagnostic_report_4077.ct544.json │ └── diagnostic_report_4077.petct602.json ├── ImagingStudy │ ├── imaging_study.1.2.276.0.75.2.2.45.215507186203720.20210914175446449.4136373320.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.8421.4009.308092408045167711117671108231.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.8421.4009.312603252934799756197864329946.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1123.1145.1620326578825.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1123.7252.1620326573183.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1126.3483.1620329455972.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1133.1614.1620336083558.1.2.1.json │ └── imaging_study.2.25.31500298076180885870438326289639355558.json ├── Patient │ └── patient.neela.tcga-ba-4077.json ├── ct-8334.txt └── pet-9946.txt ├── siim_ravi-lidc-idri-0132 ├── Condition │ └── condition-lidc.json ├── DiagnosticReport │ ├── .keep │ ├── diagnostic_report.D19-1001.json │ ├── diagnostic_report.a2287140355989135.json │ ├── diagnostic_report.a2287140355989136.json │ ├── diagnostic_report.a2287140355989137.json │ ├── diagnostic_report.a2287140355989138.json │ ├── diagnostic_report.a2287140355989139.json │ ├── diagnostic_report.a2287140355989140.json │ ├── diagnostic_report.a2287140355989141.json │ ├── diagnostic_report.a9.json │ ├── diagnostic_report_0132.126.json │ ├── diagnostic_report_0132.127.json │ └── diagnostic_report_1032.128.json ├── ImagingStudy │ ├── imaging_study.1.2.276.0.75.2.5.30.25.1.170515161227034.52238175457.1308094541.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6279.6001.218658642102832118810712329678.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6279.6001.300027087262813745730072134723.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.6279.6001.314138616411061948052843767346.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1122.1159.1620325100198.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1122.6583.1620325484644.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1123.9231.1620326176300.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1135.1466.1620338001415.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1137.1916.1620339765851.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1145.3967.1620348564193.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1147.1466.1620350315885.1.2.1.json │ └── imaging_study.2.25.292315917905782003007355414279734624434.json ├── Patient │ ├── .keep │ └── patient.lidc-idri-0132.json ├── cr-4723.txt ├── ct-7346.txt └── ct-9678.txt ├── siim_sally-breastdx-01-0003 ├── AllergyIntolerance │ └── allergy_intolerance.breastdx.json ├── Condition │ └── condition.breastdx.json ├── DiagnosticReport │ ├── diagnostic_report.D18-1001.json │ ├── diagnostic_report.a4136962230.json │ ├── diagnostic_report.a4729320611564430.json │ ├── diagnostic_report.a4729320611564431.json │ ├── diagnostic_report.a4729320611564432.json │ ├── diagnostic_report.a4729320611564433.json │ ├── diagnostic_report.a4729320611564434.json │ ├── diagnostic_report.a4729320611564435.json │ ├── diagnostic_report.a4729320611564436.json │ ├── diagnostic_report.a4729320611564437.json │ ├── diagnostic_report.a4729320611564438.json │ ├── diagnostic_report.a4729320611564439.json │ ├── diagnostic_report.breastdx.ma.json │ ├── diagnostic_report.breastdx.mg4696.json │ ├── diagnostic_report.breastdx.mg5627.json │ └── diagnostic_report.breastdx.mr.json ├── ImagingStudy │ ├── imaging_study.1.2.276.0.75.2.2.45.215507186203720.20210914164556730.4136962230.json │ ├── imaging_study.1.3.46.670589.45.1.1.4993912214784.1.5436.1538560373543.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.4792.2001.103189108764313019491934667255.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.4792.2001.105216574054253895819671475627.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.4792.2001.210984610692795733666714058539.json │ ├── imaging_study.1.3.6.1.4.1.14519.5.2.1.4792.2001.232252967813565730694525674696.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1116.7436.1620319543030.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1118.1130.1620320799977.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1118.2095.1620321324275.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1121.2688.1620324289491.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1127.1265.1620330493435.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1129.1170.1620332534347.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1137.4825.1620340108626.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1142.3508.1620345661800.1.2.1.json │ ├── imaging_study.1.3.6.1.4.1.5962.99.1.1143.2017.1620346088359.1.2.1.json │ └── imaging_study.1.3.6.1.4.1.5962.99.1.1146.6185.1620348718452.1.2.1.json ├── MedicationRequest │ └── medication_request.breastdx.json ├── Patient │ └── patient.breastdx-01-0003.json ├── ma-7255.txt ├── mg-4696.txt ├── mg-5627.txt └── mr-8539.txt ├── siim_thierry_cbct-teeth-001 ├── DiagnosticReport │ └── diagnostic_report.D18-3001.json ├── ImagingStudy │ ├── imaging_study.1.2.276.0.7230010.3.1.2.296485376.1.1665793212.499772.json │ └── imaging_study.1.3.46.670589.45.1.1.4993912214784.1.5436.1538560375246.json └── Patient │ └── patient.siim_thierry_cbct_teeth_001.json ├── spec ├── allergy_intolerance_spec.rb ├── condition_spec.rb ├── diagnostic_report_spec.rb ├── imaging_study_spec.rb ├── medication_request_spec.rb ├── medication_spec.rb ├── organization_spec.rb ├── patient_spec.rb ├── practitioner_spec.rb ├── spec_helper.rb └── specimen_spec.rb ├── upload.py └── upload.rb.deprecated /.flake8: -------------------------------------------------------------------------------- 1 | # -*- mode: conf; -*- 2 | 3 | # TODO Move into pyproject.toml once flake8 adds support 4 | # https://gitlab.com/pycqa/flake8/issues/428 5 | [flake8] 6 | # Recommend matching the black line length (default 88), 7 | # rather than using the flake8 default of 79: 8 | max-line-length = 88 9 | max-complexity = 10 10 | 11 | exclude = 12 | .git, 13 | .venv, 14 | __pycache__, 15 | build, 16 | dist 17 | 18 | # T101 = TODO (flake8-fixme). We allow TODO, but not FIXME or XXX 19 | # W503 = Line break before binary operator -- default best practice 20 | # is changing & black formats to new best practice. 21 | ignore = T101, W503 22 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | *~ 2 | *.gem 3 | *.rbc 4 | /.config 5 | /coverage/ 6 | /InstalledFiles 7 | /pkg/ 8 | /spec/reports/ 9 | /test/tmp/ 10 | /spec/examples.txt 11 | /test/version_tmp/ 12 | /tmp/ 13 | 14 | ## Specific to RubyMotion: 15 | .dat* 16 | .repl_history 17 | build/ 18 | 19 | ## Documentation cache and generated files: 20 | /.yardoc/ 21 | /_yardoc/ 22 | /doc/ 23 | /rdoc/ 24 | 25 | ## Environment normalisation: 26 | /.bundle/ 27 | /lib/bundler/man/ 28 | 29 | # for a library or gem, you might want to ignore these files since the code is 30 | # intended to run in multiple environments; otherwise, check them in: 31 | # Gemfile.lock 32 | # .ruby-version 33 | # .ruby-gemset 34 | 35 | # unless supporting rvm < 1.11.0 or doing something fancy, ignore this: 36 | .rvmrc 37 | 38 | # YAML config files 39 | *.yml 40 | 41 | # IDE 42 | .idea/ 43 | 44 | bin/ 45 | 46 | *.DS_Store 47 | __pycache__/ 48 | 49 | contribute/generated-fhir-resources/ 50 | 51 | .venv/ 52 | -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- 1 | [submodule "hackathon-images"] 2 | path = hackathon-images 3 | url = https://github.com/ImagingInformatics/hackathon-images.git 4 | branch = master 5 | -------------------------------------------------------------------------------- /.rspec: -------------------------------------------------------------------------------- 1 | --color 2 | --require spec_helper 3 | -------------------------------------------------------------------------------- /Endpoint/siim-dicomweb-endpoint.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Endpoint", 3 | "id": "siim-dicomweb", 4 | "text": { 5 | "status": "generated", 6 | "div": "
\n\t\t\tSIIM DICOMweb endpoint\n\t\t
" 7 | }, 8 | "status": "active", 9 | "connectionType": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/endpoint-connection-type", 14 | "code": "dicom-wado-rs" 15 | } 16 | ] 17 | } 18 | ], 19 | "name": "SIIM DICOMweb endpoint", 20 | "payload": [ 21 | { 22 | "type": [ 23 | { 24 | "text": "SIIM DICOMweb" 25 | } 26 | ] 27 | }, 28 | { 29 | "mimeType": [ 30 | "application/dicom" 31 | ] 32 | } 33 | ], 34 | "address": "https://hackathon.siim.org/dicomweb" 35 | } -------------------------------------------------------------------------------- /Gemfile: -------------------------------------------------------------------------------- 1 | # A sample Gemfile 2 | source "https://rubygems.org" 3 | 4 | # gem "rails" 5 | 6 | gem "rest-client" 7 | gem 'rspec' 8 | gem 'json_spec' -------------------------------------------------------------------------------- /Gemfile.lock: -------------------------------------------------------------------------------- 1 | GEM 2 | remote: https://rubygems.org/ 3 | specs: 4 | diff-lcs (1.2.5) 5 | domain_name (0.5.20170404) 6 | unf (>= 0.0.5, < 1.0.0) 7 | http-cookie (1.0.3) 8 | domain_name (~> 0.5) 9 | json_spec (1.1.4) 10 | multi_json (~> 1.0) 11 | rspec (>= 2.0, < 4.0) 12 | mime-types (3.1) 13 | mime-types-data (~> 3.2015) 14 | mime-types-data (3.2016.0521) 15 | multi_json (1.12.1) 16 | netrc (0.11.0) 17 | rest-client (2.0.2) 18 | http-cookie (>= 1.0.2, < 2.0) 19 | mime-types (>= 1.16, < 4.0) 20 | netrc (~> 0.8) 21 | rspec (3.4.0) 22 | rspec-core (~> 3.4.0) 23 | rspec-expectations (~> 3.4.0) 24 | rspec-mocks (~> 3.4.0) 25 | rspec-core (3.4.0) 26 | rspec-support (~> 3.4.0) 27 | rspec-expectations (3.4.0) 28 | diff-lcs (>= 1.2.0, < 2.0) 29 | rspec-support (~> 3.4.0) 30 | rspec-mocks (3.4.0) 31 | diff-lcs (>= 1.2.0, < 2.0) 32 | rspec-support (~> 3.4.0) 33 | rspec-support (3.4.0) 34 | unf (0.1.4) 35 | unf_ext 36 | unf_ext (0.0.7.4) 37 | 38 | PLATFORMS 39 | ruby 40 | 41 | DEPENDENCIES 42 | json_spec 43 | rest-client 44 | rspec 45 | 46 | BUNDLED WITH 47 | 1.14.6 48 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | The FHIR resources in this repository are provided under an MIT license. The images under the `hackathon-images` submodule are **mostly** provided under an MIT license as well. However, The exceptions to MIT Licensing apply to certain **radiology** images obtained from [TCIA](https://www.cancerimagingarchive.net/). See [README](https://github.com/ImagingInformatics/hackathon-images/blob/master/README.md) for all details. 2 | 3 | 4 | The MIT License (MIT) 5 | 6 | Copyright (c) 2015 Society of Imaging Informatics in Medicine 7 | 8 | Permission is hereby granted, free of charge, to any person obtaining a copy 9 | of this software and associated documentation files (the "Software"), to deal 10 | in the Software without restriction, including without limitation the rights 11 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 12 | copies of the Software, and to permit persons to whom the Software is 13 | furnished to do so, subject to the following conditions: 14 | 15 | The above copyright notice and this permission notice shall be included in all 16 | copies or substantial portions of the Software. 17 | 18 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 19 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 20 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 21 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 22 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 23 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 24 | SOFTWARE. 25 | 26 | -------------------------------------------------------------------------------- /Medication/levothyroxine.medication.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Medication", 3 | "id": "m126202002", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Levothyroxine sodium
" 7 | }, 8 | "code": { 9 | "coding": [ 10 | { 11 | "system": "http://snomed.info/sct", 12 | "code": "126202002", 13 | "display": "Levothyroxine sodium" 14 | } 15 | ] 16 | }, 17 | "doseForm": { 18 | "coding": [ 19 | { 20 | "system": "http://snomed.info/sct", 21 | "code": "46992007", 22 | "display": "Pill" 23 | } 24 | ] 25 | } 26 | } -------------------------------------------------------------------------------- /Organization/siim.organization.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Organization", 3 | "id": "siim", 4 | "active": true, 5 | "type": [ 6 | { 7 | "coding": [ 8 | { 9 | "system": "http://terminology.hl7.org/CodeSystem/organization-type", 10 | "code": "dept", 11 | "display": "Hospital Department" 12 | } 13 | ] 14 | } 15 | ], 16 | "name": "Society of Imaging Informatics in Medicine", 17 | "contact": [ 18 | { 19 | "telecom": [ 20 | { 21 | "system": "phone", 22 | "value": "(703) 723-0432" 23 | } 24 | ], 25 | "address": { 26 | "use": "work", 27 | "line": [ 28 | "19440 Golf Vista Plaza", 29 | "Ste 330" 30 | ], 31 | "city": "Leesburg", 32 | "state": "VA", 33 | "postalCode": "20176" 34 | } 35 | }, 36 | { 37 | "purpose": { 38 | "coding": [ 39 | { 40 | "system": "http://terminology.hl7.org/CodeSystem/contactentity-type", 41 | "code": "ADMIN" 42 | } 43 | ] 44 | }, 45 | "name": [ 46 | { 47 | "text": "SIIM Administrator" 48 | } 49 | ], 50 | "telecom": [ 51 | { 52 | "system": "phone", 53 | "value": "(703) 723-0432" 54 | }, 55 | { 56 | "system": "email", 57 | "value": "admin@siim.org" 58 | }, 59 | { 60 | "system": "fax", 61 | "value": "(703) 723-0415" 62 | } 63 | ], 64 | "address": { 65 | "line": [ 66 | "19440 Golf Vista Plaza", 67 | "Ste 330" 68 | ], 69 | "city": "Leesburg", 70 | "state": "VA", 71 | "postalCode": "20176" 72 | } 73 | } 74 | ] 75 | } -------------------------------------------------------------------------------- /Practitioner/siim_md.practitioner.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Practitioner", 3 | "id": "siimmd", 4 | "text": { 5 | "status": "generated", 6 | "div": "

Generated Narrative with Details

id: f007

identifier: 874635264 (OFFICIAL), 567IUI51C154 (USUAL)

name: Simone Heps (OFFICIAL)

telecom: ph: 020556936(WORK), S.M.Heps@bmc.nl(WORK), fax: 0205669283(WORK)

address: Galapagosweg 91 Den Burg 9105 PZ NLD (WORK)

gender: female

birthDate: 07/11/1971

" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "https://github.com/ImagingInformatics/hackathon-dataset", 12 | "value": "8022992389394228" 13 | } 14 | ], 15 | "name": [ 16 | { 17 | "use": "official", 18 | "family": "SIIM", 19 | "given": [ 20 | "Provider" 21 | ], 22 | "suffix": [ 23 | "MD" 24 | ] 25 | } 26 | ], 27 | "telecom": [ 28 | { 29 | "system": "phone", 30 | "value": "(703) 723-0432", 31 | "use": "work" 32 | }, 33 | { 34 | "system": "email", 35 | "value": "info@siim.org", 36 | "use": "work" 37 | } 38 | ], 39 | "gender": "female", 40 | "birthDate": "1970-11-06", 41 | "address": [ 42 | { 43 | "use": "work", 44 | "line": [ 45 | "19440 Golf Vista Plaza", 46 | "Ste 330" 47 | ], 48 | "city": "Leesburg", 49 | "state": "VA", 50 | "postalCode": "20176" 51 | } 52 | ] 53 | } -------------------------------------------------------------------------------- /contribute/diagnosticReport-template.txt: -------------------------------------------------------------------------------- 1 | { 2 | "id": "CHANGEME", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "CHANGEME", 10 | "subject": { 11 | "reference": "CHANGEME" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "CHANGEME" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "CHANGEME", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /contribute/imagingStudy-template.txt: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "CHANGEME", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "CHANGEME" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "CHANGEME", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "CHANGEME" 32 | }, 33 | "description": "CHANGEME", 34 | "started": "CHANGEME", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 1 42 | } -------------------------------------------------------------------------------- /contribute/patient-template.txt: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Patient", 3 | "id": "CHANGEME", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "official", 11 | "system": "urn:oid:1.2.36.146.595.217.0.1", 12 | "value": "CHANGEME", 13 | "assigner": { 14 | "display": "TCIA" 15 | } 16 | } 17 | ], 18 | "active": true, 19 | "name": [ 20 | { 21 | "use": "official", 22 | "family": "CHANGEME", 23 | "given": [ 24 | "CHANGEME" 25 | ] 26 | } 27 | ], 28 | "gender": "CHANGEME", 29 | "birthDate": "CHANGEME", 30 | "deceasedBoolean": false, 31 | "managingOrganization": { 32 | "reference": "Organization/siim" 33 | } 34 | } -------------------------------------------------------------------------------- /fhir_server.yml.dist: -------------------------------------------------------------------------------- 1 | # fhir_server.yml.dist 2 | 3 | url: http://hackathon.siim.org/fhir/ 4 | apikey: 5 | format: application/json 6 | -------------------------------------------------------------------------------- /isort.cfg: -------------------------------------------------------------------------------- 1 | [settings] 2 | profile = black 3 | float_to_top = true 4 | -------------------------------------------------------------------------------- /poetry.toml: -------------------------------------------------------------------------------- 1 | [virtualenvs] 2 | # Keep virtualenv in project for easier Makefile 3 | in-project = true 4 | -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- 1 | [tool.poetry] 2 | name = "hackathon-dataset" 3 | version = "0.1.0" 4 | description = "SIIM Hack-a-thon dataset upload" 5 | authors = ["Your Name "] 6 | readme = "README.md" 7 | 8 | [tool.poetry.dependencies] 9 | python = "^3.11" 10 | requests = "^2.32.2" 11 | pyyaml = "^6.0.1" 12 | 13 | [tool.poetry.group.dev.dependencies] 14 | black = "^24.3.0" 15 | mypy = "^1.8.0" 16 | isort = "^5.13.2" 17 | 18 | [build-system] 19 | requires = ["poetry-core"] 20 | build-backend = "poetry.core.masonry.api" 21 | -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | pydicom 2 | requests -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/CHANGELOG.md: -------------------------------------------------------------------------------- 1 | # Changelog 2 | 3 | Changelog for siim-hackathon-toolbox Package: 4 | 5 | ## [1.0.0] - 2023-05-30 6 | ### Added 7 | - Initial release of the SIIM Hackathon Toolbox package. 8 | - Added `modify_dicom_tags` command. 9 | - Added `dcm2fhir` command. 10 | - Added `tag_modifier_request` YAML file. 11 | -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/Dockerfile: -------------------------------------------------------------------------------- 1 | # Use an official Python runtime as the base image 2 | FROM python:3.10-slim 3 | 4 | # Set the working directory in the container 5 | WORKDIR /app 6 | 7 | # Copy the code and configuration files into the container 8 | COPY . /app 9 | 10 | # Install the dependencies from requirements.txt 11 | RUN pip install --no-cache-dir -r requirements.txt 12 | 13 | # Install the package inside the container 14 | RUN pip install -e . 15 | 16 | # Set up the shared volume and its subdirectories 17 | VOLUME /app/data/inputs 18 | VOLUME /app/data/output 19 | 20 | # Set the entrypoint to run command-line commands on the shared volume 21 | ENTRYPOINT ["siimhack"] 22 | 23 | # Default command if no arguments are provided 24 | CMD ["--help"] -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/LICENSE.md: -------------------------------------------------------------------------------- 1 | The MIT License (MIT) 2 | 3 | Copyright (c) 2015 Society of Imaging Informatics in Medicine 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/default_siim_hackathon_dataset_request.yaml: -------------------------------------------------------------------------------- 1 | PatientName: # Patient'Name 2 | faker_kwargs: 3 | firstname: '' # provide a firstname. if not, one is generated 4 | lastname: '' # provide a lastname. if not, one is generated 5 | gender: 6 | tag: 7 | PatientSex # provide a gender. if not, one is generated. Should be 'M' or 'F' 8 | StudyDate: # Study date 9 | faker_kwargs: 10 | default_value: 11 | tag: StudyDate # Keep the study date if already present 12 | before: '' # provide a before date. if not, now is used as before date 13 | after: '-5y' 14 | PatientBirthDate: # Patient's Birth Date 15 | faker_kwargs: 16 | before: '-20y' # provide a before date. if not, now is used as before data 17 | after: '-80y' 18 | PatientAge: #Patient age 19 | faker_kwargs: 20 | patient_birth_date: 21 | tag: PatientBirthDate 22 | study_date: 23 | tag: StudyDate 24 | AccessionNumber: # Accession number 25 | faker_kwargs: 26 | length: 10 27 | only_digits: true 28 | only_letters: false 29 | PatientID: # Patient Id 30 | faker_kwargs: 31 | default_value: # Provide an unique patient id as string on this line 32 | tag: PatientID # OR keep the patient id if already present 33 | 34 | 35 | -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/requirements.txt: -------------------------------------------------------------------------------- 1 | click==8.1.3 2 | Faker==18.7.0 3 | fhir.resources==5.1.1 4 | pydicom==2.3.1 5 | pyrootutils==1.0.4 6 | PyYAML==6.0 7 | setuptools==70.0.0 8 | tqdm==4.66.3 9 | 10 | -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/setup.cfg: -------------------------------------------------------------------------------- 1 | [metadata] 2 | name = siim-hackathon-cli 3 | version = 1.0.0 4 | description = SIIM Hackathon dataset CLI to add new data in the dataset. 5 | author = Stephan Hahn 6 | author_email = stephan.hahn.pro@gmail.com 7 | long_description = file: README.md 8 | long_description_content_type = text/markdown 9 | url = https://github.com/ImagingInformatics/hackathon-dataset.git 10 | 11 | [options] 12 | packages = find: 13 | python_requires = >=3.8, <3.11 14 | 15 | [options.entry_points] 16 | console_scripts = 17 | siimhack = siimhack_dataset_toolbox.__init__:cli -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/setup.py: -------------------------------------------------------------------------------- 1 | import setuptools 2 | 3 | 4 | # Call setuptools.setup with the configuration 5 | setuptools.setup(install_requires=[ 6 | 'click==8.1.3', 7 | 'Faker==18.7.0', 8 | 'numpy==1.24.2', 9 | 'pydicom==2.3.1', 10 | 'pyrootutils==1.0.4', 11 | 'PyYAML==6.0', 12 | 'tqdm==4.66.3'] 13 | , ) 14 | -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/siimhack_dataset_toolbox/config_default.py: -------------------------------------------------------------------------------- 1 | siim_default_configuration = { 2 | 'PatientName': { 3 | 'faker_kwargs': { 4 | 'firstname': '', # provide a firstname. if not, one is generated 5 | 'lastname': '', # provide a lastname. if not, one is generated 6 | 'gender': { 7 | 'tag': 'PatientSex' # provide a gender. if not, one is generated. Should be 'M' or 'F' 8 | } 9 | } 10 | }, 11 | 'StudyDate': { 12 | 'faker_kwargs': { 13 | 'default_value': { 14 | 'tag': 'StudyDate' # Keep the study date if already present 15 | }, 16 | 'before': '', # provide a before date. if not, now is generated 17 | 'after': '-5y' 18 | } 19 | }, 20 | 'PatientBirthDate': { 21 | 'faker_kwargs': { 22 | 'before': '-20y', # provide a before date. if not, now is generated 23 | 'after': '-80y' 24 | } 25 | }, 26 | 'PatientAge': { 27 | 'faker_kwargs': { 28 | 'patient_birth_date': { 29 | 'tag': 'PatientBirthDate' 30 | }, 31 | 'study_date': { 32 | 'tag': 'StudyDate' 33 | } 34 | } 35 | }, 36 | 'AccessionNumber': { 37 | 'faker_kwargs': { 38 | 'length': 10, 39 | 'only_digits': True, 40 | 'only_letters': False 41 | } 42 | }, 43 | 'PatientID': { 44 | 'faker_kwargs': { 45 | 'default_value': { 46 | 'tag': 'PatientID' # Provide an unique patient id 47 | } 48 | } 49 | } 50 | } -------------------------------------------------------------------------------- /scripts/siimhack_dataset_toolbox/siimhack_dataset_toolbox/dicom_vrs.py: -------------------------------------------------------------------------------- 1 | """ 2 | Value representation definitions as in http://dicom.nema.org/dicom/2013/output/chtml/part05/sect_6.2.html 3 | """ 4 | from typing import Callable 5 | 6 | from faker import Faker 7 | 8 | from siimhack_dataset_toolbox.dicom_vr_faker import DicomVRProvider 9 | 10 | 11 | class VR: 12 | """"A provider that simulate several dicom VR.""" 13 | 14 | def __init__(self, short_name, long_name, generator: Callable = None): 15 | self.short_name = short_name 16 | self.long_name = self.long_name() 17 | self.generator = generator 18 | 19 | def __str__(self): 20 | return f"{self.short_name} ({self.long_name})" 21 | 22 | 23 | class VRs: 24 | """DICOM Value Representations""" 25 | faker = Faker() 26 | faker.add_provider(DicomVRProvider) 27 | ApplicationEntity = VR('AE', 'Application Entity') 28 | AgeString = VR('AS', 'Age String') 29 | AttributeTag = VR('AT', 'Attribute Tag') 30 | CodeString = VR('CS', 'Code String') 31 | Date = VR('DA', 'Date') 32 | DecimalString = VR('DS', 'Decimal String') 33 | DateTime = VR('DT', 'Date Time') 34 | FloatingPointSingle = VR('FL', 'Floating Point Single') 35 | FloatingPointDouble = VR('FD', 'Floating Point Double') 36 | IntegerString = VR('IS', 'Integer String') 37 | LongString = VR('LO', 'Long String') 38 | LongText = VR('LT', 'Long Text') 39 | OtherByteString = VR('OB', 'Other Byte String') 40 | OtherDoubleString = VR('OD', 'Other Double String') 41 | OtherFloatString = VR('OF', 'Other Float String') 42 | OtherWordString = VR('OW', 'Other Word String') 43 | PersonName = VR('PN', 'Person Name') 44 | ShortString = VR('SH', 'Short String') 45 | SignedLong = VR('SL', 'Signed Long') 46 | SequenceOfItems = VR('SQ', 'Sequence of Items') 47 | SignedShort = VR('SS', 'Signed Short') 48 | ShortText = VR('ST', 'Short Text') 49 | Time = VR('TM', 'Time') 50 | UniqueIdentifier = VR('UI', 'Unique Identifier') 51 | UnsignedLong = VR('UL', 'Unsigned Long') 52 | Unknown = VR('UN', 'Unknown') 53 | UnsignedShort = VR('US', 'Unsigned Short') 54 | UnlimitedText = VR('UT', 'Unlimited Text') 55 | -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/Condition/condition-5072.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "a411079800582267", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: Andy SIIM
Condition: a411079800582267
Category: Diagnosis
Code: 276952000 - Squamous cell carcinoma of tongue
Severity: Severe
Onset Date: 2000-01-28
Body Site: Left upper lobe of lung
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "24484000", 37 | "display": "Severe" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "93880001", 46 | "display": "Primary malignant neoplasm of lung" 47 | } 48 | ], 49 | "text": "Lung cancer NOS" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "44714003", 57 | "display": "Left upper lobe of lung" 58 | } 59 | ], 60 | "text": "Left upper lobe of lung" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimandy" 65 | }, 66 | "onsetDateTime": "2000-01-28" 67 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/DiagnosticReport/diagnostic_report.A20210527083803.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "A20210527083803", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2021-05-27T00:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimandy" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "A20210527083803" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2021-05-27", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/DiagnosticReport/diagnostic_report.a5748109426316800.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a5748109426316800", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a5748109426316800" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimandy" 31 | }, 32 | "effectiveDateTime": "2000-03-06", 33 | "issued": "2000-03-06T12:49:49+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 5/30/1999\nDate of Receipt: 5/31/1999\nDate of Report: 6/6/1999\n\nClinical Diagnosis & History:\nSite 1: Rule Out Melanoma, Lesion - New\n\nSpecimens Submitted:\n1: Left Lower Anterior Chest, Biopsy- Shave\n\nDIAGNOSIS: \n1. Skin, Left Lower Anterior Chest, Biopsy- Shave:\n - Melanoma, predominantly in situ, extending to a side tissue edge (see\nnote). \n\nNote: Single cell microinvasion to 0.2 mm cannot be excluded. No ulceration\nis present. Melan A immunostain was examined. \n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/DiagnosticReport/diagnostic_report.a5748109426316801.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a5748109426316801", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a5748109426316801" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimandy" 31 | }, 32 | "effectiveDateTime": "2000-03-06", 33 | "issued": "2000-03-06T18:44:13+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 5/30/1999\nDate of Receipt: 5/31/1999\nDate of Report: 6/6/1999\n\nClinical Diagnosis & History:\nSite 1: Rule Out Melanoma, Lesion - New\n\nSpecimens Submitted:\n1: Left shoulder, Biopsy- Shave\n\nDIAGNOSIS: \n1. Skin, Left shoulder, Biopsy- Shave:\n - Melanoma in situ, extending to a side tissue edge.\n - Sox10 immunostain was examined. \n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/DiagnosticReport/diagnostic_report.a5748109426316802.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a5748109426316802", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a5748109426316802" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimandy" 31 | }, 32 | "effectiveDateTime": "2000-03-06", 33 | "issued": "2000-03-06T17:08:23+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 5/30/1999\nDate of Receipt: 5/31/1999\nDate of Report: 6/6/1999\n\nClinical Diagnosis & History:\nSite 1: Rule Out Melanoma, Lesion - New\n\nSpecimens Submitted:\n1: Left Dorsal Forearm, Biopsy- Shave\n\nDIAGNOSIS: \n1. Skin, Left Dorsal Forearm, Biopsy- Shave:\n - Malignant melanoma, predominantly in situ, focally invasive to 0.2 mm;\nextending to side tissue edges (see note).\n\nNote: No ulceration is present (pT1a). No dermal melanocytic mitoses or\nlymphovascular invasion are seen. Regression changes are noted. Focal\nassociated dermal nevus is seen.\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/DiagnosticReport/diagnostic_report.a5748109426316804.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a5748109426316804", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a5748109426316804" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimandy" 31 | }, 32 | "effectiveDateTime": "2000-03-06", 33 | "issued": "2000-03-06T20:02:57+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 5/30/1999\nDate of Receipt: 5/31/1999\nDate of Report: 6/6/1999\n\nClinical Diagnosis & History:\nSite 1: Rule Out Melanoma, Lesion - New\n\nSpecimens Submitted:\n1: Right Dorsal Forearm, Biopsy- Shave\n\nDIAGNOSIS: \n1. Skin, Right Dorsal Forearm, Biopsy- Shave:\n - Seborrheic keratosis and increased density of junctional melanocytes (see note).\n\nNote: Increased density of junctional melanocytes with variable atypia is\nnoted extending to tissue edges. While the findings are insufficient for the\ndiagnosis of a melanocytic neoplasm and background melanocytic hyperplasia\nis considered; clinical correlation is recommended with consideration of\nadditional sampling if there is significant residual lesion or\nrepigmentation occurs. \n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/DiagnosticReport/diagnostic_report_5072.nm267.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a411079800582267", 4 | "text": { 5 | "status": "generated", 6 | "div": "

Whole Body Tc-99m Bone Scintigraphy 2/23/2000

\n\n

Indication: History of lung cancer with back pain, evaluate for bone mets

\n\n

Procedure: Following intravenous administration of a standard dose of Tc-99m (not indicated in metadata) MDP a bone scan was performed.

\n\n

Findings: No suspicious areas of increased or decreased uptake to suggest bony metastatic disease. Suspect bilateral first MCP degenerative change.

\n\n

Impression:\nNegative for bony metastatic disease.

" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a411079800582267" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "coding": [ 28 | { 29 | "system": "http://loinc.org", 30 | "code": "39818-0" 31 | } 32 | ], 33 | "text": "Bone Scan whole body" 34 | }, 35 | "subject": { 36 | "reference": "Patient/siimandy" 37 | }, 38 | "effectiveDateTime": "2000-02-23", 39 | "issued": "2000-02-23T09:23:00+10:00", 40 | "performer": [ 41 | { 42 | "reference": "Organization/siim", 43 | "display": "Society of Imaging Informatics in Medicine" 44 | } 45 | ], 46 | "conclusion": "Impression:\nNegative for bony metastatic disease. Recommend follow up per clinical guidelines." 47 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1117.5035.1620319789811.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a5748109426316800", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1117.5035.1620319789811.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a5748109426316800", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimandy" 32 | }, 33 | "started": "2000-03-06", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1132.4202.1620335303953.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a5748109426316802", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1132.4202.1620335303953.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a5748109426316802", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimandy" 32 | }, 33 | "started": "2000-03-06", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1138.6433.1620341053601.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a5748109426316801", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1138.6433.1620341053601.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a5748109426316801", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimandy" 32 | }, 33 | "started": "2000-03-06", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1143.1798.1620345777706.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a5748109426316804", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1143.1798.1620345777706.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a5748109426316804", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimandy" 32 | }, 33 | "started": "2000-03-06", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_andy_tcga-50-5072/ImagingStudy/imaging_study.2.25.293755960071087971037154104444119427201.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "A20210527083803", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
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MR Prostate
StatusFINAL
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Prostate Pathology biopsy report
StatusFINAL
" 11 | }, 12 | "identifier": [ 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN", 20 | "display": "Accession ID" 21 | } 22 | ] 23 | }, 24 | "system": "http://example.org/DiagnosticReport", 25 | "value": "PathDiagnosticReport0" 26 | } 27 | ], 28 | "status": "final", 29 | "category": [ 30 | { 31 | "coding": [ 32 | { 33 | "system": "http://loinc.org", 34 | "code": "LP7839-6", 35 | "display": "Pathology" 36 | } 37 | ] 38 | } 39 | ], 40 | "code": { 41 | "coding": [ 42 | { 43 | "system": "http://loinc.org", 44 | "code": "66117-3", 45 | "display": "Prostate Pathology biopsy report" 46 | } 47 | ] 48 | }, 49 | "subject": { 50 | "reference": "Patient/siimbibata", 51 | "display": "Example Patient" 52 | }, 53 | "effectiveDateTime": "2021-05-11", 54 | "performer": [ 55 | { 56 | "reference": "Practitioner/practitioner149", 57 | "display": "Luigi Maas" 58 | } 59 | ], 60 | "result": [ 61 | { 62 | "reference": "Observation/ob155" 63 | }, 64 | { 65 | "reference": "Observation/ob156" 66 | }, 67 | { 68 | "reference": "Observation/ob154" 69 | }, 70 | { 71 | "reference": "Observation/ob153" 72 | } 73 | ], 74 | "presentedForm": [ 75 | { 76 | "url": "http://example.org/pathology/eCCDiagnosticReport0" 77 | } 78 | ] 79 | } 80 | -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-PathEPE.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob153", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:19.891+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "laboratory", 15 | "display": "Laboratory" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "385009003", 25 | "display": "Presence of direct invasion by primary malignant neoplasm of prostate to periprostatic tissue (observable entity)" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner149", 36 | "display": "Luigi Maas" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://snomed.info/sct", 43 | "code": "49907008", 44 | "display": "Uninvolved (Qualifier Value)" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-PathGleason.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob154", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:29.850+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "laboratory", 15 | "display": "Laboratory" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "372278000", 25 | "display": "Gleason score" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner149", 36 | "display": "Luigi Maas" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://cap.org/eCC", 43 | "code": "16811", 44 | "display": "Score 7" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-PathLesionSize.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob155", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:38.873+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "laboratory", 15 | "display": "Laboratory" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "385014004", 25 | "display": "Tumor size, dominant nodule (observable entity)" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner149", 36 | "display": "Luigi Maas" 37 | } 38 | ], 39 | "valueQuantity": { 40 | "value": 100, 41 | "unit": "milimeter", 42 | "system": "http://unitsofmeasure.org", 43 | "code": "mm" 44 | }, 45 | "bodySite": { 46 | "coding": [ 47 | { 48 | "system": "http://snomed.info/sct", 49 | "code": "5026003", 50 | "display": "Structure of posterior surface of prostate" 51 | } 52 | ] 53 | } 54 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-PathObsSeminalVesicleInvasion.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob156", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:45.707+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "laboratory", 15 | "display": "Laboratory" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "384999004", 25 | "display": "Status of seminal vesicle invasion by tumor (observable entity)" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner149", 36 | "display": "Luigi Maas" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://snomed.info/sct", 43 | "code": "49907008", 44 | "display": "Uninvolved (Qualifier Value)" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-RadEPE.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob157", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:52.693+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "imaging", 15 | "display": "Imaging" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "385009003", 25 | "display": "Presence of direct invasion by primary malignant neoplasm of prostate to periprostatic tissue (observable entity)" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner147", 36 | "display": "Kiki Bambrick" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://snomed.info/sct", 43 | "code": "49907008", 44 | "display": "Uninvolved (Qualifier Value)" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-RadGleason.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob158", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:58.859+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "imaging", 15 | "display": "Imaging" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "372278000", 25 | "display": "Gleason score" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner147", 36 | "display": "Kiki Bambrick" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://radlex.org", 43 | "code": "RID49502", 44 | "display": "clinically significant prostate cancer" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-RadImpression.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "RadObs-Impression", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:58.859+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "imaging", 15 | "display": "Imaging" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://radlex.org", 24 | "code": "RID49895", 25 | "display": "Impression" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner147", 36 | "display": "Kiki Bambrick" 37 | } 38 | ], 39 | "valueString": "Low ADC value increases the likelihood of Gleason grade group 2 or higher", 40 | "bodySite": { 41 | "coding": [ 42 | { 43 | "system": "http://snomed.info/sct", 44 | "code": "5026003", 45 | "display": "Structure of posterior surface of prostate" 46 | } 47 | ] 48 | } 49 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-RadLeasionSize.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob159", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:47:06.430+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "imaging", 15 | "display": "Imaging" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "385014004", 25 | "display": "Tumor size, dominant nodule (observable entity)" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner147", 36 | "display": "Kiki Bambrick" 37 | } 38 | ], 39 | "valueQuantity": { 40 | "value": 7, 41 | "unit": "milimeter", 42 | "system": "http://unitsofmeasure.org", 43 | "code": "mm" 44 | }, 45 | "bodySite": { 46 | "coding": [ 47 | { 48 | "system": "http://snomed.info/sct", 49 | "code": "5026003", 50 | "display": "Structure of posterior surface of prostate" 51 | } 52 | ] 53 | } 54 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-RadPIRADS.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "RadObs-PIRADS", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:46:58.859+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "imaging", 15 | "display": "Imaging" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://radlex.org", 24 | "code": "RID50294", 25 | "display": "PI-RADS Assessment Category" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner147", 36 | "display": "Kiki Bambrick" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://radlex.org", 43 | "code": "RID50292", 44 | "display": "PI-RADS 4" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Observation-RadSeminalVesicleInvasion.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Observation", 3 | "id": "ob160", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:47:12.943+00:00" 7 | }, 8 | "status": "final", 9 | "category": [ 10 | { 11 | "coding": [ 12 | { 13 | "system": "http://terminology.hl7.org/CodeSystem/observation-category", 14 | "code": "imaging", 15 | "display": "Imaging" 16 | } 17 | ] 18 | } 19 | ], 20 | "code": { 21 | "coding": [ 22 | { 23 | "system": "http://snomed.info/sct", 24 | "code": "384999004", 25 | "display": "Status of seminal vesicle invasion by tumor (observable entity)" 26 | } 27 | ] 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimbibata", 31 | "display": "Bibata Amadou" 32 | }, 33 | "performer": [ 34 | { 35 | "reference": "Practitioner/practitioner147", 36 | "display": "Kiki Bambrick" 37 | } 38 | ], 39 | "valueCodeableConcept": { 40 | "coding": [ 41 | { 42 | "system": "http://snomed.info/sct", 43 | "code": "49907008", 44 | "display": "Uninvolved (Qualifier Value)" 45 | } 46 | ] 47 | }, 48 | "bodySite": { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "5026003", 53 | "display": "Structure of posterior surface of prostate" 54 | } 55 | ] 56 | } 57 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/Practitioner-KikiPractitioner.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Practitioner", 3 | "id": "practitioner147", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:03:35.128+00:00", 7 | "profile": [ 8 | "http://hl7.org/fhir/us/core/StructureDefinition/us-core-practitioner" 9 | ] 10 | }, 11 | "identifier": [ 12 | { 13 | "system": "http://hl7.org/fhir/sid/us-npi", 14 | "value": "1871569939" 15 | }, 16 | { 17 | "system": "http://someIdentifier.com", 18 | "value": "radpract1" 19 | } 20 | ], 21 | "name": [ 22 | { 23 | "family": "Bambrick", 24 | "given": [ 25 | "Kiki" 26 | ] 27 | } 28 | ], 29 | "telecom": [ 30 | { 31 | "system": "phone", 32 | "value": "952-883-6789" 33 | } 34 | ] 35 | } 36 | -------------------------------------------------------------------------------- /siim_bibata-prostate/Practitioner-LauraPractitioner.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Practitioner", 3 | "id": "practitioner149", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:03:44.049+00:00", 7 | "profile": [ 8 | "http://hl7.org/fhir/us/core/StructureDefinition/us-core-practitioner" 9 | ] 10 | }, 11 | "identifier": [ 12 | { 13 | "system": "http://hl7.org/fhir/sid/us-npi", 14 | "value": "1245319599" 15 | }, 16 | { 17 | "system": "http://someIdentifier.com", 18 | "value": "pathpract1" 19 | } 20 | ], 21 | "name": [ 22 | { 23 | "family": "Turtzo Sample", 24 | "given": [ 25 | "Laura" 26 | ] 27 | } 28 | ], 29 | "telecom": [ 30 | { 31 | "system": "phone", 32 | "value": "952-777-3333" 33 | } 34 | ], 35 | "address": [ 36 | { 37 | "line": [ 38 | "621 Science Drive, ST." 39 | ], 40 | "city": "ST. LOUIS PARK", 41 | "state": "MN", 42 | "postalCode": "55425", 43 | "country": "US" 44 | } 45 | ] 46 | } 47 | -------------------------------------------------------------------------------- /siim_bibata-prostate/PractitionerRole-KikiPractitionerRole.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "PractitionerRole", 3 | "id": "practitionerrole151", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:04:19.762+00:00" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "http://hl7.org/fhir/sid/us-npi", 11 | "value": "1871569939" 12 | } 13 | ], 14 | "practitioner": { 15 | "reference": "Practitioner/practitioner147" 16 | }, 17 | "code": [ 18 | { 19 | "coding": [ 20 | { 21 | "system": "http://snomed.org/sct", 22 | "code": "66862007", 23 | "display": "Radiologist" 24 | } 25 | ] 26 | } 27 | ], 28 | "contact": [ 29 | { 30 | "telecom": [ 31 | { 32 | "system": "phone", 33 | "value": "720-242-5555" 34 | } 35 | ] 36 | } 37 | ] 38 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/PractitionerRole-LauraPractitionerRole.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "PractitionerRole", 3 | "id": "practitionerrole152", 4 | "meta": { 5 | "versionId": "1", 6 | "lastUpdated": "2023-06-07T20:07:25.868+00:00" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "http://someIdentifier.com", 11 | "value": "pathpract1" 12 | }, 13 | { 14 | "system": "http://hl7.org/fhir/sid/us-npi", 15 | "value": "1245319599" 16 | } 17 | ], 18 | "practitioner": { 19 | "reference": "Practitioner/practitioner149" 20 | }, 21 | "code": [ 22 | { 23 | "coding": [ 24 | { 25 | "system": "http://terminology.hl7.org/CodeSystem/v2-0443", 26 | "code": "PI", 27 | "display": "Primary Interpreter" 28 | } 29 | ] 30 | } 31 | ] 32 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/bibata.md: -------------------------------------------------------------------------------- 1 | Bibata Amadou is a fake patient with an idea of q201 who has several FHIR DiagnosticReports and Observations in Radiology and Pathology which indicate that he has concerning results regarding his prostate cancer. he's expected to be used for Radiology Pathology Concordance and clinical decision support use cases. -------------------------------------------------------------------------------- /siim_bibata-prostate/diagnostic_report.A20210527083404.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "A20210527083404", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2021-05-27T00:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimbibata" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "A20210527083404" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2021-05-27", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_bibata-prostate/imaging_study.2.25.299459841081210795766196429029719697528.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "A20210527083404", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "2.25.299459841081210795766196429029719697528" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "A20210527083404", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimbibata" 32 | }, 33 | "description": "", 34 | "started": "2021-05-27", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 14 42 | } -------------------------------------------------------------------------------- /siim_james-opth-002/Condition/condition.macularedema.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "eyecondition", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: James SIIM
Condition: eyecondition
Category: Diagnosis
Code: 312911008 - Macular edema
Onset Date: 08-08-2014
Severity: Severe
Body Site: Left eye
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "24484000", 37 | "display": "Severe" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "312911008", 46 | "display": "Clinically significant macular edema" 47 | } 48 | ], 49 | "text": "macular edema" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "362503005", 57 | "display": "Entire left eye" 58 | } 59 | ], 60 | "text": "Left eye" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimjames" 65 | }, 66 | "onsetDateTime": "2014-08-08" 67 | } -------------------------------------------------------------------------------- /siim_james-opth-002/DiagnosticReport/diagnostic_report.A20210527084134.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "A20210527084134", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2021-05-27T00:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimjames" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "A20210527084134" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2021-05-27", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_james-opth-002/DiagnosticReport/diagnostic_report.a10653.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a10653", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "10653" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimjames" 31 | }, 32 | "effectiveDateTime": "2012-01-11", 33 | "issued": "2012-01-11T15:48:01+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "To be filled out by hand afterwards" 41 | } -------------------------------------------------------------------------------- /siim_james-opth-002/ImagingStudy/imaging_study.1.2.276.0.75.2.5.30.25.1.120111080847834.160607927836.260193337.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a10653", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.2.276.0.75.2.5.30.25.1.120111080847834.160607927836.260193337" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "10653", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjames" 32 | }, 33 | "started": "2012-01-11", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1 41 | } -------------------------------------------------------------------------------- /siim_james-opth-002/ImagingStudy/imaging_study.2.25.65957032953333047834795908969375420851.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "A20210527084134", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "2.25.65957032953333047834795908969375420851" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "A20210527084134", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjames" 32 | }, 33 | "description": "", 34 | "started": "2021-05-27", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 14 42 | } -------------------------------------------------------------------------------- /siim_james-opth-002/Patient/patient.opth-002.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Patient", 3 | "id": "siimjames", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "official", 11 | "system": "urn:oid:1.2.36.146.595.217.0.1", 12 | "value": "opth-002", 13 | "assigner": { 14 | "display": "TCIA" 15 | } 16 | } 17 | ], 18 | "active": true, 19 | "name": [ 20 | { 21 | "use": "official", 22 | "family": "SIIM", 23 | "given": [ 24 | "James" 25 | ] 26 | } 27 | ], 28 | "gender": "other", 29 | "birthDate": "1968-09-15", 30 | "deceasedBoolean": false, 31 | "managingOrganization": { 32 | "reference": "Organization/siim" 33 | } 34 | } -------------------------------------------------------------------------------- /siim_jean-radiotherapy-001/DiagnosticReport/diagnostic_report.A20210527084352.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "A20210527084352", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2021-05-27T00:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimjean" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "A20210527084352" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2021-05-27", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_jean-radiotherapy-001/ImagingStudy/imaging_study.2.25.296845492630076945453047486810533140602.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "A20210527084352", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "2.25.296845492630076945453047486810533140602" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "A20210527084352", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjean" 32 | }, 33 | "description": "", 34 | "started": "2021-05-27", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 14 42 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/Condition/condition.diabetes.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "diabetes-jessica-siim", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: Jessica SIIM
Condition: diabetes
Category: Diagnosis
Code: 44054006 - Type 2 diabetes mellitus
Onset Date: 05-20-2018
Severity: Severe
Body Site: Entire pancreas
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "24484000", 37 | "display": "Severe" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "44054006", 46 | "display": "type 2 diabetes mellitus" 47 | } 48 | ], 49 | "text": "type 2 diabetes mellitus" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "181277001", 57 | "display": "Entire pancreas" 58 | } 59 | ], 60 | "text": "Entire pancreas" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimjessica" 65 | }, 66 | "onsetDateTime": "2018-05-20" 67 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/Condition/condition.hypertensiondiabetes.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "hypertension-jessica-siim", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: Jessica SIIM
Condition: hypertension
Category: Diagnosis
Code: 429198000 - Exertional hypertension (disorder)
Onset Date: 04-01-2019
Severity: Severe
Body Site: Entire heart
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "24484000", 37 | "display": "Severe" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "429198000", 46 | "display": "exertional hypertension" 47 | } 48 | ], 49 | "text": "exertional hypertension" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "302509004", 57 | "display": "Entire heart" 58 | } 59 | ], 60 | "text": "Entire heart" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimjessica" 65 | }, 66 | "onsetDateTime": "2019-04-01" 67 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/DiagnosticReport/diagnostic_report.A20210527084753.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "A20210527084753", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2021-05-27T00:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimjessica" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "A20210527084753" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2021-05-27", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/DiagnosticReport/diagnostic_report.a1000051.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a1000051", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a1000051" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimjessica" 31 | }, 32 | "effectiveDateTime": "2019-03-21", 33 | "issued": "2019-03-21T14:37:15+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "To be filled out by hand afterwards" 41 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/ImagingStudy/imaging_study.1.2.276.0.75.2.2.70.0.1.190321143715254.9210271859845.1000051.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a1000051", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.2.276.0.75.2.2.70.0.1.190321143715254.9210271859845.1000051" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "assigner": { 24 | "reference": "Organization/siim" 25 | } 26 | } 27 | ], 28 | "status": "available", 29 | "subject": { 30 | "reference": "Patient/siimjessica" 31 | }, 32 | "started": "2019-03-21", 33 | "endpoint": [ 34 | { 35 | "reference": "Endpoint/siim-dicomweb" 36 | } 37 | ], 38 | "numberOfSeries": 1, 39 | "numberOfInstances": 3 40 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/ImagingStudy/imaging_study.2.25.269859997690759739055099378767846712697.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "A20210527084753", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "2.25.269859997690759739055099378767846712697" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "A20210527084753", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjessica" 32 | }, 33 | "description": "", 34 | "started": "2021-05-27", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 14 42 | } -------------------------------------------------------------------------------- /siim_jessica-opth-001/Patient/patient.opth-001.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Patient", 3 | "id": "siimjessica", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "official", 11 | "system": "urn:oid:1.2.36.146.595.217.0.1", 12 | "value": "opth-001", 13 | "assigner": { 14 | "display": "TCIA" 15 | } 16 | } 17 | ], 18 | "active": true, 19 | "name": [ 20 | { 21 | "use": "official", 22 | "family": "SIIM", 23 | "given": [ 24 | "Jessica" 25 | ] 26 | } 27 | ], 28 | "gender": "female", 29 | "birthDate": "1954-08-08", 30 | "deceasedBoolean": false, 31 | "managingOrganization": { 32 | "reference": "Organization/siim" 33 | } 34 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/Condition/condition.z058.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "z058cond", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: Joe SIIM
Condition: z058cond
Category: Diagnosis
Code: 254626006 - Adenocarcionoma of lung
Severity: Severe
Onset Date: 1986-03-30
Body Site: Left lower lobe of lung
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "24484000", 37 | "display": "Severe" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "254626006", 46 | "display": "Adenocarcinoma of lung" 47 | } 48 | ], 49 | "text": "Adenocarcinoma of lung" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "41224006", 57 | "display": "Left lower lobe of lung" 58 | } 59 | ], 60 | "text": "Left lower lobe" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimjoe" 65 | }, 66 | "onsetDateTime": "1986-03-30" 67 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/DiagnosticReport/diagnostic_report.A20210527084809.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "A20210527084809", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2021-05-27T00:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimjoe" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "A20210527084809" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2021-05-27", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/DiagnosticReport/diagnostic_report.a9488265223658752.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a9488265223658752", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a9488265223658752" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimjoe" 31 | }, 32 | "effectiveDateTime": "1986-07-01", 33 | "issued": "1986-07-01T21:12:32+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/25/1986\nDate of Receipt: 2/25/1986\nDate of Report: 3/2/1986\n\nClinical Diagnosis & History:\n1 nevus rule out melanoma. 1) 1.9 x 0.8 cm lesion.\n\nSpecimens Submitted:\n1: Upper right arm; excision\n\nDIAGNOSIS: \n1. Skin, upper right arm; excision: \n - Predominantly junctional dysplastic nevus with moderate atypia, inflamed; margins not involved\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/DiagnosticReport/diagnostic_report.a9488265223658753.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a9488265223658753", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a9488265223658753" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimjoe" 31 | }, 32 | "effectiveDateTime": "1986-07-01", 33 | "issued": "1986-07-01T20:42:54+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/25/1986\nDate of Receipt: 2/25/1986\nDate of Report: 3/2/1986\n\nClinical Diagnosis & History:\n1 nevus rule out melanoma. 1) 0.2 cm lesion.\n\nSpecimens Submitted:\n1: Posterior left shoulder; excision\n\nDIAGNOSIS: \n1. Skin, posterior left shoulder; excision: \n - Blue nevus; margins not involved.\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/DiagnosticReport/diagnostic_report.a9488265223658754.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a9488265223658754", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a9488265223658754" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimjoe" 31 | }, 32 | "effectiveDateTime": "1986-07-01", 33 | "issued": "1986-07-01T12:39:07+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/1986\nDate of Receipt: 2/15/1986\nDate of Report: 2/19/1986\n\nClinical Diagnosis & History:\nSite 1: Gross/Micro Melanoma Lesion - Changed\n\nSpecimens Submitted:\n1: Location, Right Upper Back Scapular Region, Biopsy- Shave\n\nDIAGNOSIS: \n1. Skin, right upper back, scapular region; shave biopsy: \n - Features consistent with an early evolving radial growth phase melanoma. (see Note.)\n\nNote: The lesion is small and has the silhouette of a dysplastic nevus.\nHowever, several atypical melanocytes are seen at all layers of the\nepidermis. A few similar cells are also seen in the papillary dermis. While\nwe considered a traumatized dysplastic nevus, the findings are most in\nkeeping with an early melanoma (0.25 mm thick, Clark level II,\nnon-ulcerated, with no mitosis; confined to its radial growth phase). The\ninked section margins are not involved, but the lesion extends to within < 1\nmm of a tissue edge. Levels and an immunostain for melan-A were examined.\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/DiagnosticReport/diagnostic_report.z058.ct3733.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a257132503242682", 4 | "text": { 5 | "status": "generated", 6 | "div": "

CT Onco Lung Mass 3/30/1986

\n\n

Clinical information\n60 yo male with left hilar mass.

\n\n

Comparison\nNone.

\n\n

Findings\nLung mass\nSize: 5.3 x 4.0 x 4.0 cm

\n\n

Location: left hilar region

\n\n

Shape: Smoothly marginated

\n\n

Internal consistency: homogenous, hypodense to surrounding muscle.

\n\n

Local extent\nPleural surface: Left lower lobe metastasis

\n\n

Chest wall: No involvement.

\n\n

Airway: Compression of the lingula

\n\n

Vessels: Mass surrounds and nearly occludes the left inferior pulmonary artery.

\n\n

Nerves: No involvement.

\n\n

Regional extent\nLymph nodes: AP window, and right hilar adenopathy.

\n\n

Distant metastases (chest and upper abdomen): None.

\n\n

Other findings\nOther findings: None.

\n\n

Impression\nLeft hilar mass concerning for malignancy.

" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a257132503242682" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "coding": [ 28 | { 29 | "system": "http://loinc.org", 30 | "code": "24627-2" 31 | } 32 | ], 33 | "text": "chest CT" 34 | }, 35 | "subject": { 36 | "reference": "Patient/siimjoe" 37 | }, 38 | "effectiveDateTime": "1986-03-30", 39 | "issued": "1986-03-30T09:23:00+10:00", 40 | "performer": [ 41 | { 42 | "reference": "Organization/siim", 43 | "display": "Society of Imaging Informatics in Medicine" 44 | } 45 | ], 46 | "conclusion": "Impression: Left hilar mass concerning for malignancy.", 47 | "conclusionCode": [ 48 | { 49 | "coding": [ 50 | { 51 | "system": "http://snomed.info/sct", 52 | "code": "35917007", 53 | "display": "Adenocarcinoma" 54 | } 55 | ] 56 | } 57 | ] 58 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/DiagnosticReport/diagnostic_report.z058.pt5759.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a819497684894126", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ok
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a819497684894126" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "coding": [ 28 | { 29 | "system": "http://loinc.org", 30 | "code": "38269-7" 31 | } 32 | ], 33 | "text": "chest PET/CT" 34 | }, 35 | "subject": { 36 | "reference": "Patient/siimjoe" 37 | }, 38 | "effectiveDateTime": "1986-04-22", 39 | "issued": "1986-04-22T09:23:00+10:00", 40 | "performer": [ 41 | { 42 | "reference": "Organization/siim", 43 | "display": "Society of Imaging Informatics in Medicine" 44 | } 45 | ] 46 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/ImagingSelection/imaging_selection.1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.5.36.json: -------------------------------------------------------------------------------- 1 | { "resourceType" : "ImagingSelection", "id" : "77136e6f-178d-4c4c-982d-9e7de171d5a7", "text" : { "status" : "generated", "div" : "

Generated Narrative: ImagingSelection

Resource ImagingSelection "example-basic-image-selection"

identifier: id:\u00a0urn:oid:1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.5.36

status: available

subject:

code: Key Images ()

studyUid:

derivedFrom:

seriesUid: 1.3.6.1.4.1.14519.5.2.1.7777.9002.224254801503854435438984518612

frameOfReferenceUid: 1.3.6.1.4.1.14519.5.2.1.7777.9002.283524663025987652563675649054

instance

uid: 1.3.6.1.4.1.14519.5.2.1.7777.9002.318039513135739469661568501726

sopClass: urn:oid:1.2.840.10008.5.1.4.1.1.2 (Details: urn:ietf:rfc:3986 code urn:oid:1.2.840.10008.5.1.4.1.1.2 = 'urn:oid:1.2.840.10008.5.1.4.1.1.2', stated as 'null')

" }, "identifier" : [{ "system" : "urn:dicom:uid", "value" : "urn:oid:1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105.5.36" }], "status" : "available", "subject" : { "type" : "Patient", "reference": "Patient/siimjoe" }, "code" : { "text" : "Key Images" }, "studyUid" : "1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105", "derivedFrom" : [{ "type" : "ImagingStudy", "identifier" : { "system" : "urn:dicom:uid", "value" : "urn:oid:1.3.6.1.4.1.14519.5.2.1.7777.9002.988079582344471175076015633105" } }], "seriesUid" : "1.3.6.1.4.1.14519.5.2.1.7777.9002.224254801503854435438984518612", "frameOfReferenceUid" : "1.3.6.1.4.1.14519.5.2.1.7777.9002.283524663025987652563675649054", "instance" : [{ "uid" : "1.3.6.1.4.1.14519.5.2.1.7777.9002.318039513135739469661568501726", "sopClass" : { "system" : "urn:ietf:rfc:3986", "code" : "urn:oid:1.2.840.10008.5.1.4.1.1.2" } }] } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1116.1432.1620319148179.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a9488265223658754", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1116.1432.1620319148179.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a9488265223658754", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjoe" 32 | }, 33 | "started": "1986-07-01", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1145.4479.1620348174276.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a9488265223658753", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1145.4479.1620348174276.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a9488265223658753", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjoe" 32 | }, 33 | "started": "1986-07-01", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1147.1273.1620349952573.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a9488265223658752", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1147.1273.1620349952573.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a9488265223658752", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjoe" 32 | }, 33 | "started": "1986-07-01", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/ImagingStudy/imaging_study.2.25.2794218761846424444317355673683954585.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "A20210527084809", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "2.25.2794218761846424444317355673683954585" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "A20210527084809", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimjoe" 32 | }, 33 | "description": "", 34 | "started": "2021-05-27", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 14 42 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/Patient/patient.z058.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Patient", 3 | "id": "siimjoe", 4 | "text": { 5 | "status": "generated", 6 | "div": "
\r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n \r\n
NameJim SIIM
Address534 Erewhon, Pleasantville, Vic, 3999
ContactsHome: unknown. Work: (03) 5555 6473
IdMRN: TCGA-17-Z058 (TCIA)
\r\n
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "TCGA-17-Z058", 13 | "assigner": { 14 | "display": "TCIA" 15 | } 16 | } 17 | ], 18 | "active": true, 19 | "name": [ 20 | { 21 | "use": "official", 22 | "family": "SIIM", 23 | "given": [ 24 | "Joe" 25 | ] 26 | }, 27 | { 28 | "use": "usual", 29 | "given": [ 30 | "Joe" 31 | ] 32 | } 33 | ], 34 | "telecom": [ 35 | { 36 | "use": "home" 37 | }, 38 | { 39 | "system": "phone", 40 | "value": "(035) 555 6473", 41 | "use": "work" 42 | } 43 | ], 44 | "gender": "male", 45 | "birthDate": "1926-03-30", 46 | "deceasedBoolean": false, 47 | "address": [ 48 | { 49 | "use": "home", 50 | "line": [ 51 | "534 Erewhon St" 52 | ], 53 | "city": "PleasantVille", 54 | "state": "Vic", 55 | "postalCode": "3999" 56 | } 57 | ], 58 | "contact": [ 59 | { 60 | "relationship": [ 61 | { 62 | "coding": [ 63 | { 64 | "system": "http://terminology.hl7.org/CodeSystem/v2-0131", 65 | "code": "C", 66 | "display": "Emergency Contact" 67 | } 68 | ] 69 | } 70 | ], 71 | "name": { 72 | "family": "Marché", 73 | "given": [ 74 | "Bénédicte", 75 | "du" 76 | ] 77 | }, 78 | "telecom": [ 79 | { 80 | "system": "phone", 81 | "value": "+33 (237) 998327" 82 | } 83 | ] 84 | } 85 | ], 86 | "managingOrganization": { 87 | "reference": "Organization/siim" 88 | } 89 | } -------------------------------------------------------------------------------- /siim_joe-tcga-17-z058/Specimen/specimen.z058.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Specimen", 3 | "id": "siimjoe", 4 | "text": { 5 | "status": "generated", 6 | "div": "
[Put rendering here]
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "http://ehr.acme.org/identifiers/collections", 11 | "value": "23234352356" 12 | } 13 | ], 14 | "accessionIdentifier": { 15 | "system": "http://lab.acme.org/specimens/2011", 16 | "value": "XXX66-4444" 17 | }, 18 | "type": { 19 | "coding": [ 20 | { 21 | "system": "http://terminology.hl7.org/CodeSystem/v2-0487", 22 | "code": "BLDV", 23 | "display": "Blood venous" 24 | } 25 | ] 26 | }, 27 | "subject": { 28 | "reference": "Patient/siimjoe", 29 | "display": "siimjoe" 30 | }, 31 | "receivedTime": "1986-04-25T07:03:00Z", 32 | "collection": { 33 | "collector": { 34 | "reference": "Practitioner/siimmd" 35 | }, 36 | "collectedDateTime": "1986-04-25T06:15:00Z", 37 | "quantity": { 38 | "value": 10, 39 | "unit": "mL" 40 | }, 41 | "method": { 42 | "coding": [ 43 | { 44 | "system": "http://terminology.hl7.org/CodeSystem/v2-0488", 45 | "code": "LNV" 46 | } 47 | ] 48 | } 49 | } 50 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/Condition/condition-4077.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "a605867053656544", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: Neela SIIM
Condition: a605867053656544
Category: Diagnosis
Code: 276952000 - Squamous cell carcinoma of tongue
Onset Date: 1996-04-28
Severity: Severe
Body Site: Base of tongue
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "24484000", 37 | "display": "Severe" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "276952000", 46 | "display": "Squamous cell carcinoma of tongue" 47 | } 48 | ], 49 | "text": "Squamous cell carcinoma of tongue" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "47975008", 57 | "display": "Base of tongue" 58 | } 59 | ], 60 | "text": "Base of tongue" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimneela" 65 | }, 66 | "onsetDateTime": "1996-04-28" 67 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/DiagnosticReport/diagnostic_report.D19-1002.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "D19-1002", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2019-01-05T17:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimneela" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "D19-1002" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2019-01-05", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/DiagnosticReport/diagnostic_report.a4136373320.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4136373320", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4136373320" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimneela" 31 | }, 32 | "effectiveDateTime": "2021-09-14", 33 | "issued": "2021-09-14T17:54:46+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "To be filled out by hand afterwards" 41 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/DiagnosticReport/diagnostic_report.a7516395503667574.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a7516395503667574", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a7516395503667574" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimneela" 31 | }, 32 | "effectiveDateTime": "1996-03-17", 33 | "issued": "1996-03-17T14:42:58+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 1/10/1996\nDate of Receipt: 1/11/1996\nDate of Report: 1/15/1996\n\nClinical Diagnosis & History:\nSeborrheic Keratosis, Lesion New.\n\nSpecimens Submitted:\n1: Right Forehead, Superior, Biopsy- Shave\n\nDIAGNOSIS: \n1. Right Forehead, Superior, Biopsy- Shave:\n - Verrucoid seborrheic keratosis, inflamed.\n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/DiagnosticReport/diagnostic_report.a7516395503667575.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a7516395503667575", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a7516395503667575" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimneela" 31 | }, 32 | "effectiveDateTime": "1996-03-17", 33 | "issued": "1996-03-17T15:30:55+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 1/19/1996\nDate of Receipt: 1/20/1996\nDate of Report: 1/24/1996\n\nClinical Diagnosis & History:\nRule out BCC (shave biopsy)\n\nSpecimens Submitted:\n1: Right shoulder\n\nDIAGNOSIS: \n1. Right shoulder; shave: \n - Irritated seborrheic keratosis\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/DiagnosticReport/diagnostic_report.a7516395503667576.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a7516395503667576", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a7516395503667576" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimneela" 31 | }, 32 | "effectiveDateTime": "1996-03-17", 33 | "issued": "1996-03-17T17:21:23+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 1/20/1996\nDate of Receipt: 1/21/1996\nDate of Report: 1/23/1996\n\nClinical Diagnosis & History:\n1.2cm tender plaque \nRule out irritated SK\nShave removal\n\nSpecimens Submitted:\n1: Left temple; shave excision\n\nDIAGNOSIS: \n1. Skin; left temple; shave excision: \n - Seborrheic keratosis, inflamed\n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/DiagnosticReport/diagnostic_report.a7516395503667577.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a7516395503667577", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a7516395503667577" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimneela" 31 | }, 32 | "effectiveDateTime": "1996-03-17", 33 | "issued": "1996-03-17T14:42:52+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 3/17/1996\nDate of Receipt: 3/18/1996\nDate of Report: 3/22/1996\n\nClinical Diagnosis & History:\n1) Rule out Lentigo\n Shave biopsy\n\nSpecimens Submitted:\n1: Left upper near midline back\n\nDIAGNOSIS: \n1. Left upper near midline back, shave biopsy: \n - Irritated and inflamed seborrheic keratosis with focal acantholysis\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/ImagingStudy/imaging_study.1.2.276.0.75.2.2.45.215507186203720.20210914175446449.4136373320.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4136373320", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.2.276.0.75.2.2.45.215507186203720.20210914175446449.4136373320" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "assigner": { 24 | "reference": "Organization/siim" 25 | } 26 | } 27 | ], 28 | "status": "available", 29 | "subject": { 30 | "reference": "Patient/siimneela" 31 | }, 32 | "started": "2021-09-14", 33 | "endpoint": [ 34 | { 35 | "reference": "Endpoint/siim-dicomweb" 36 | } 37 | ], 38 | "numberOfSeries": 8, 39 | "numberOfInstances": 8 40 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1123.1145.1620326578825.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a7516395503667574", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1123.1145.1620326578825.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a7516395503667574", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimneela" 32 | }, 33 | "started": "1996-03-17", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1123.7252.1620326573183.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a7516395503667577", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1123.7252.1620326573183.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a7516395503667577", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimneela" 32 | }, 33 | "started": "1996-03-17", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1126.3483.1620329455972.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a7516395503667575", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1126.3483.1620329455972.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a7516395503667575", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimneela" 32 | }, 33 | "started": "1996-03-17", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1133.1614.1620336083558.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a7516395503667576", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1133.1614.1620336083558.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a7516395503667576", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimneela" 32 | }, 33 | "started": "1996-03-17", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_neela-tcga-ba-4077/ImagingStudy/imaging_study.2.25.31500298076180885870438326289639355558.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "D19-1002", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "2.25.31500298076180885870438326289639355558" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "D19-1002", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimneela" 32 | }, 33 | "description": "Placenta", 34 | "started": "2019-01-05", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 2, 41 | "numberOfInstances": 17 42 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/Condition/condition-lidc.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "Condition", 3 | "id": "a819497684894127", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Patient: Ravi SIIM
Condition: a819497684894127
Category: Diagnosis
Code: 427359005 - Solitary pulmonary nodule
Severity: Moderate
Onset Date: 01-01-2000
Body Site: Left upper lobe of lung
" 7 | }, 8 | "clinicalStatus": { 9 | "coding": [ 10 | { 11 | "system": "http://terminology.hl7.org/CodeSystem/condition-clinical", 12 | "code": "active" 13 | } 14 | ] 15 | }, 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/condition-category", 21 | "code": "encounter-diagnosis", 22 | "display": "Encounter Diagnosis" 23 | }, 24 | { 25 | "system": "http://snomed.info/sct", 26 | "code": "439401001", 27 | "display": "Diagnosis" 28 | } 29 | ] 30 | } 31 | ], 32 | "severity": { 33 | "coding": [ 34 | { 35 | "system": "http://snomed.info/sct", 36 | "code": "6736007", 37 | "display": "Midgrade" 38 | } 39 | ] 40 | }, 41 | "code": { 42 | "coding": [ 43 | { 44 | "system": "http://snomed.info/sct", 45 | "code": "427359005", 46 | "display": "Solitary Pulmonary nodule" 47 | } 48 | ], 49 | "text": "Solitary pulmonary nodule" 50 | }, 51 | "bodySite": [ 52 | { 53 | "coding": [ 54 | { 55 | "system": "http://snomed.info/sct", 56 | "code": "44714003", 57 | "display": "Left upper lobe of lung" 58 | } 59 | ], 60 | "text": "Left upper lobe of lung" 61 | } 62 | ], 63 | "subject": { 64 | "reference": "Patient/siimravi" 65 | }, 66 | "onsetDateTime": "2000-01-01" 67 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/.keep: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ImagingInformatics/hackathon-dataset/323f516bad7c26c8c15101f968aaf641c440e737/siim_ravi-lidc-idri-0132/DiagnosticReport/.keep -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.D19-1001.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "D19-1001", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2019-01-04T14:00:00+00:00", 10 | "subject": { 11 | "reference": "Patient/siimravi" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "D19-1001" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2019-01-04", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989135.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989135", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989135" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T14:24:44+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/2000\nDate of Receipt: 2/15/2000\nDate of Report: 2/21/2000\n\nClinical Diagnosis & History:\nSite 1: Atypia, Lesion- Atypical.\n\nSpecimens Submitted:\n1: Left lateral lower leg, Biopsy- Shave\n\nDIAGNOSIS: \n1. Left lateral lower leg, Biopsy- Shave\n - Solar lentigo, see note\n\nNote: deeper levels are pending. \n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989136.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989136", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989136" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T17:53:21+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/2000\nDate of Receipt: 2/15/2000\nDate of Report: 2/21/2000\n\nClinical Diagnosis & History:\nRule out Atypical Nevus, lesion- new.\n\nSpecimens Submitted:\n1: Right Anterior Upper Arm, Biopsy- Shave\n\nDIAGNOSIS:\n\n1. Skin, right anterior upper arm; shave biopsy: \n - Lentiginous compound dysplastic nevus with moderate atypia, not seen at tissue edges in the examined planes of section. \n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989137.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989137", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989137" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T18:22:45+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/8/2000\nDate of Receipt: 2/8/2000\nDate of Report: 2/13/2000\n\nClinical Diagnosis & History:\nSite 1: Rule Out Atypical Nevus, Lesion - Changed\n\nSpecimens Submitted:\n1: Left Lumbosacral Back, Biopsy- Shave\n\nDIAGNOSIS: \n1. Left Lumbosacral Back, Biopsy- Shave:\n - Compound dysplastic melanocytic nevus with slight to moderate atypia, section margins not involved.\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJohn Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989138.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989138", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989138" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T14:18:19+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/2000\nDate of Receipt: 2/15/2000\nDate of Report: 2/21/2000\n\nClinical Diagnosis & History:\nRule out Atypical Nevus, lesion- new.\n\nSpecimens Submitted:\n1: Right Anterior Thigh, Biopsy- Shave\n\nDIAGNOSIS: \n\n1. Skin, right anterior thigh; shave biopsy: \n - Lentiginous junctional melanocytic proliferation, extending to within 0.5 mm from side tissue edge (see note). \n\nNote: The findings are most consistent with a pauci-cellular junctional dysplastic nevus. Sox10 immunostain was examined. \n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989139.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989139", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989139" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T21:18:35+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/2000\nDate of Receipt: 2/15/2000\nDate of Report: 2/21/2000\n\nClinical Diagnosis & History:\nSite 1: Atypia, Lesion- Atypical.\n\nSpecimens Submitted:\n1: Left lateral mid back, Biopsy- Shave, 3 pieces\n\nDIAGNOSIS: \n1. Left lateral mid back, Biopsy- Shave:\n - Compound dysplastic nevus with mild to moderate atypia, see note\n\nNote: the margins in the plane of section are free. \n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989140.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989140", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989140" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T20:49:23+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/2000\nDate of Receipt: 2/15/2000\nDate of Report: 2/21/2000\n\nClinical Diagnosis & History:\nSite 1: Seborrheic Keratosis, Lesion- New \n\nSpecimens Submitted:\n1: Right zygoma, Biopsy- Tangential \n\nDIAGNOSIS: \n1. Right zygoma, Biopsy- Tangential: \n\n - Seborrheic keratosis. \n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a2287140355989141.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a2287140355989141", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a2287140355989141" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2000-01-01", 33 | "issued": "2000-01-01T14:36:15+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 2/15/2000\nDate of Receipt: 2/15/2000\nDate of Report: 2/21/2000\n\nClinical Diagnosis & History:\nSite 1: Rule out. Atypical nevus, lesion - changed, rule out atypical\nnevus, lesion - changed, rule out atypical nevus, lesion changed.\n\nSpecimens Submitted:\n1: Left lower outer quadrant of breast, biopsy- shave\n\nDIAGNOSIS: \n1. Skin, Left lower outer quadrant of breast, biopsy- shave: \n - Compound dysplastic melanocytic nevus with mild atypia\n\nNote: The margins in the plane of section are free. \n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report.a9.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a9", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "9" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimravi" 31 | }, 32 | "effectiveDateTime": "2017-05-15", 33 | "issued": "2017-05-15T16:29:50+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "To be filled out by hand afterwards" 41 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/DiagnosticReport/diagnostic_report_0132.127.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a819497684894127", 4 | "text": { 5 | "status": "generated", 6 | "div": "

Chest: AP View

\n\n

Clinical History: Cough

\n\n

Comparison: None

\n\n

Findings:

\n\n

The cardiomediastinal silhouette and pulmonary vasculature are within normal limits.

\n\n

Linear scarring and pleural thickening are present in the right upper lobe. There is thickening of the right paratracheal stripe as well as questionable righit hillier adenopathy. A 1.6 cm nodule projects in the left upper lobe. The right costophrenic angle is effaced.

\n\n

No free air beneath the hemidiaphragms. The osseous structures are grossly unremarkable.

\n\n

Impression:

\n\n
    \n

  1. 1.6 cm left upper lobe nodule.

    2. \n

  2. Right upper lobe scarring and pleural thickening along with right pleural effusion versus scarring.

    3. \n
\n\n

Recommendations:

\n\n

CT Chest is recommended to further evaluate the above findings and impression.

\n
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a819497684894127" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "coding": [ 28 | { 29 | "system": "http://loinc.org", 30 | "code": "36572-6" 31 | } 32 | ], 33 | "text": "Chest AP" 34 | }, 35 | "subject": { 36 | "reference": "Patient/siimravi" 37 | }, 38 | "effectiveDateTime": "2000-01-01", 39 | "issued": "2000-01-02T11:15:00+10:00", 40 | "performer": [ 41 | { 42 | "reference": "Organization/siim", 43 | "display": "Society of Imaging Informatics in Medicine" 44 | } 45 | ], 46 | "conclusion": "Impression: 1.6 cm left upper lobe nodule. Right upper lobe scarring and pleural thickening along with right pleural effusion versus scarring. Recommendations: CT Chest is recommended to further evaluate the above findings and impression." 47 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/ImagingStudy/imaging_study.1.2.276.0.75.2.5.30.25.1.170515161227034.52238175457.1308094541.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a9", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.2.276.0.75.2.5.30.25.1.170515161227034.52238175457.1308094541" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "9", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimravi" 32 | }, 33 | "started": "2017-05-15", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "generic order" 42 | } -------------------------------------------------------------------------------- /siim_ravi-lidc-idri-0132/ImagingStudy/imaging_study.1.3.6.1.4.1.14519.5.2.1.6279.6001.300027087262813745730072134723.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a819497684894127", 4 | "text": { 5 | "status": "generated", 6 | "div": "
Chest PA
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ImagingStudy Resource
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ImagingStudy Resource
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ImagingStudy Resource
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ImagingStudy Resource
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Penicillin - Hives and Airway compromise
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Patient: Sally SIIM
Condition: breastcondition
Category: Diagnosis
Code: 89164003 - Breast lump
Onset Date: 05-24-2012
Severity: Severe
Body Site: Left breast
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DiagnosticReport Resource
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DiagnosticReport Resource
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DiagnosticReport Resource
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DiagnosticReport Resource
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DiagnosticReport Resource
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DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564433" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T18:28:28+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "No report available" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.a4729320611564434.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4729320611564434", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564434" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T14:04:49+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 3/17/2008\nDate of Receipt: 3/18/2008\nDate of Report: 3/20/2008\n\nClinical Diagnosis & History:\nSite 1: Gross/Micro Rule Out Y Nevus- Atypical other Lesion - New\n\nSpecimens Submitted:\n1: Location, right mid medial chest, Biopsy- Shave\n\nDIAGNOSIS: \n1. Skin, right mid medial chest, Biopsy- Shave\n - Lichenoid keratosis. \n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.a4729320611564435.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4729320611564435", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564435" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T13:15:24+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "No report available" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.a4729320611564436.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4729320611564436", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564436" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T20:08:08+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "No report available" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.a4729320611564437.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4729320611564437", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564437" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T15:48:13+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "No report available" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.a4729320611564438.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4729320611564438", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564438" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T13:06:39+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 3/17/2008\nDate of Receipt: 3/18/2008\nDate of Report: 3/20/2008\n\nClinical Diagnosis & History:\n1) symptomatic lesion.\n\nSpecimens Submitted:\n1. Skin, lateral right breast, shave removal: \n - Seborrheic keratosis, pedunculated and inflamed.\n\nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.a4729320611564439.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a4729320611564439", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a4729320611564439" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "text": "Unknown" 28 | }, 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "effectiveDateTime": "2008-04-29", 33 | "issued": "2008-04-29T20:01:01+00:00", 34 | "performer": [ 35 | { 36 | "reference": "Organization/siim", 37 | "display": "Society of Imaging Informatics in Medicine" 38 | } 39 | ], 40 | "conclusion": "Date of Collection/Procedure/Outside Report: 03/17/2008\nDate of Receipt: 03/18/2008\nDate of Report: 03/20/2008\n\nClinical Diagnosis & History:\nlentigo, Lesion- New.\n\nSpecimens Submitted:\n1: Right jawline, Biopsy- Shave\n\nDIAGNOSIS: \n1. Right jawline, Biopsy- Shave\n - Melanoma in-situ, lentigo maligna type, see note\n\nNote: Rare single cells suspicious for microinvasion are noted at a depth of 0.3 mm.\n \nI ATTEST THAT THE ABOVE DIAGNOSIS IS BASED UPON MY PERSONAL EXAMINATION OF\nTHE SLIDES (AND/OR OTHER MATERIAL), AND THAT I HAVE REVIEWED AND APPROVED\nTHIS REPORT.\n\nJane Doe, M.D.\n*** Report Electronically Signed Out ***" 41 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.breastdx.ma.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a889127246021897", 4 | "text": { 5 | "status": "generated", 6 | "div": "
\r\n

05/24/2008\nSurgical Specimen Radiograph

\n\n

Clinical History: Unknown

\n\n

Technique: Single surgical specimen radiograph

\n\n

Findings: The surgical specimen contains an intact wire and surgical clip. No masses or calcifications are identified.

\n\n

Impression:

\n\n

Specimen radiograph with intact wire and surgical clip.

" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a889127246021897" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "coding": [ 28 | { 29 | "system": "http://snomed.info/sct", 30 | "code": "89164003", 31 | "display": "Breast lump" 32 | }, 33 | { 34 | "system": "http://loinc.org", 35 | "code": "24597-7" 36 | } 37 | ], 38 | "text": "Breast Specimen Mammogram" 39 | }, 40 | "subject": { 41 | "reference": "Patient/siimsally" 42 | }, 43 | "effectiveDateTime": "2008-05-24", 44 | "issued": "2008-05-24T09:23:00+10:00", 45 | "performer": [ 46 | { 47 | "reference": "Organization/siim", 48 | "display": "Society of Imaging Informatics in Medicine" 49 | } 50 | ], 51 | "conclusion": "Specimen radiograph with intact wire and surgical clip." 52 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/DiagnosticReport/diagnostic_report.breastdx.mg4696.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "DiagnosticReport", 3 | "id": "a361814883895900", 4 | "text": { 5 | "status": "generated", 6 | "div": "

Full Field Digital Left Diagnostic Mammogram 4/22/2008

\n\n

Clinical History: 59 year-old female with history of left invasive ductal carcinoma (age 55) status post lumpectomy.

\n\n

Technique: LML, L XCCL

\n\n

Findings:

\n\n

LEFT BREAST: There are scattered fibroglandular densities. There are expected lumpectomy changes in the upper outer quadrant with surgical clips in place. Skin thickening is consistent with post radiation changes. No concerning masses, architectural distortions, or suspicious calcifications are identified.

\n\n

Impression:

\n\n

LEFT BREAST: Expected changes status post lumpectomy and radiation. Benign. BI-RADS 2 - Recommend routine screening in 1 year.

" 7 | }, 8 | "identifier": [ 9 | { 10 | "use": "usual", 11 | "system": "http://www.siim.org/", 12 | "value": "a361814883895900" 13 | } 14 | ], 15 | "status": "final", 16 | "category": [ 17 | { 18 | "coding": [ 19 | { 20 | "system": "http://terminology.hl7.org/CodeSystem/v2-0074", 21 | "code": "RAD" 22 | } 23 | ] 24 | } 25 | ], 26 | "code": { 27 | "coding": [ 28 | { 29 | "system": "http://snomed.info/sct", 30 | "code": "89164003", 31 | "display": "Breast lump" 32 | }, 33 | { 34 | "system": "http://loinc.org", 35 | "code": "42169-3" 36 | } 37 | ], 38 | "text": "Digital Diagnostic Mammogram Left Breast" 39 | }, 40 | "subject": { 41 | "reference": "Patient/siimsally" 42 | }, 43 | "effectiveDateTime": "2008-04-19", 44 | "issued": "2008-04-19T09:23:00+10:00", 45 | "performer": [ 46 | { 47 | "reference": "Organization/siim", 48 | "display": "Society of Imaging Informatics in Medicine" 49 | } 50 | ], 51 | "conclusion": "Impression: LEFT BREAST: Expected changes status post lumpectomy and radiation. Benign. BI-RADS 2 - Recommend routine screening in 1 year." 52 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.2.276.0.75.2.2.45.215507186203720.20210914164556730.4136962230.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4136962230", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.2.276.0.75.2.2.45.215507186203720.20210914164556730.4136962230" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "assigner": { 24 | "reference": "Organization/siim" 25 | } 26 | } 27 | ], 28 | "status": "available", 29 | "subject": { 30 | "reference": "Patient/siimsally" 31 | }, 32 | "started": "2021-09-14", 33 | "endpoint": [ 34 | { 35 | "reference": "Endpoint/siim-dicomweb" 36 | } 37 | ], 38 | "numberOfSeries": 8, 39 | "numberOfInstances": 8 40 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.46.670589.45.1.1.4993912214784.1.5436.1538560373543.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "D18-1001", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.46.670589.45.1.1.4993912214784.1.5436.1538560373543" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "D18-1001", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "description": "", 34 | "started": "2018-10-03", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 2, 41 | "numberOfInstances": 6 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.14519.5.2.1.4792.2001.103189108764313019491934667255.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a889127246021897", 4 | "text": { 5 | "status": "generated", 6 | "div": "
MA SURGICAL SPECIMEN
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "urn:oid:1.3.6.1.4.1.14519.5.2.1.4792.2001.103189108764313019491934667255" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a889127246021897", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-05-24", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "MA SURGICAL SPECIMEN", 42 | "series": [ 43 | { 44 | "uid": "1.3.6.1.4.1.14519.5.2.1.4792.2001.104616474240757574154876423123", 45 | "number": 2, 46 | "modality": { 47 | "coding": [ 48 | { 49 | "system": "http://dicom.nema.org/resources/ontology/DCM", 50 | "code": "MG" 51 | } 52 | ] 53 | }, 54 | "description": "L SPECIMEN", 55 | "numberOfInstances": 1, 56 | "instance": [ 57 | { 58 | "uid": "1.3.6.1.4.1.14519.5.2.1.4792.2001.267212981954448819074140522716", 59 | "sopClass": { 60 | "system": "urn:ietf:rfc:3986", 61 | "code": "urn:oid:1.2.840.10008.5.1.4.1.1.1.2" 62 | }, 63 | "number": 78 64 | } 65 | ] 66 | } 67 | ] 68 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1116.7436.1620319543030.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564431", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1116.7436.1620319543030.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564431", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1118.1130.1620320799977.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564438", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1118.1130.1620320799977.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564438", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1118.2095.1620321324275.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564435", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1118.2095.1620321324275.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564435", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1121.2688.1620324289491.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564434", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1121.2688.1620324289491.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564434", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1127.1265.1620330493435.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564437", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1127.1265.1620330493435.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564437", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1129.1170.1620332534347.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564430", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1129.1170.1620332534347.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564430", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1137.4825.1620340108626.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564433", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1137.4825.1620340108626.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564433", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1142.3508.1620345661800.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564439", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1142.3508.1620345661800.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564439", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1143.2017.1620346088359.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564436", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1143.2017.1620346088359.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564436", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/ImagingStudy/imaging_study.1.3.6.1.4.1.5962.99.1.1146.6185.1620348718452.1.2.1.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "a4729320611564432", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.6.1.4.1.5962.99.1.1146.6185.1620348718452.1.2.1" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "a4729320611564432", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimsally" 32 | }, 33 | "started": "2008-04-29", 34 | "endpoint": [ 35 | { 36 | "reference": "Endpoint/siim-dicomweb" 37 | } 38 | ], 39 | "numberOfSeries": 1, 40 | "numberOfInstances": 1, 41 | "description": "Lesion Dermoscopy" 42 | } -------------------------------------------------------------------------------- /siim_sally-breastdx-01-0003/MedicationRequest/medication_request.breastdx.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "MedicationRequest", 3 | "id": "mr86737385927264", 4 | "text": { 5 | "status": "generated", 6 | "div": "
m126202002: levothyroxine sodium 50mcg oral tablet

ONE tablet taken ONCE daily

to patient ref: siimsally

by practitioner example

dispense 30 tablets

" 7 | }, 8 | "status": "active", 9 | "intent": "order", 10 | "medication": { 11 | "reference": { 12 | "reference": "Medication/m126202002", 13 | "display": "prescribed medication" 14 | } 15 | }, 16 | "subject": { 17 | "reference": "Patient/siimsally" 18 | }, 19 | "dosageInstruction": [ 20 | { 21 | "timing": { 22 | "repeat": { 23 | "frequency": 1, 24 | "period": 1, 25 | "periodUnit": "d" 26 | } 27 | }, 28 | "route": { 29 | "coding": [ 30 | { 31 | "system": "http://snomed.info/sct", 32 | "code": "394899003", 33 | "display": "oral administration of treatment" 34 | } 35 | ] 36 | } 37 | } 38 | ], 39 | "dispenseRequest": { 40 | "quantity": { 41 | "value": 30, 42 | "unit": "tablets" 43 | } 44 | } 45 | } -------------------------------------------------------------------------------- /siim_thierry_cbct-teeth-001/DiagnosticReport/diagnostic_report.D18-3001.json: -------------------------------------------------------------------------------- 1 | { 2 | "id": "D18-3001", 3 | "resourceType": "DiagnosticReport", 4 | "text": { 5 | "status": "generated", 6 | "div": "
DiagnosticReport Resource
" 7 | }, 8 | "status": "final", 9 | "issued": "2018-10-03T09:52:55+00:00", 10 | "subject": { 11 | "reference": "Patient/siimthierry" 12 | }, 13 | "performer": { 14 | "reference": "Organization/siim", 15 | "display": "Society of Imaging Informatics in Medicine" 16 | }, 17 | "identifier": [ 18 | { 19 | "use": "usual", 20 | "system": "http://www.siim.org/", 21 | "value": "D18-3001" 22 | } 23 | ], 24 | "category": { 25 | "coding": [ 26 | { 27 | "system": "http://hl7.org/fhir/v2/0074", 28 | "code": "RAD" 29 | } 30 | ] 31 | }, 32 | "effectiveDateTime": "2018-10-03", 33 | "conclusion": "To be filled out by hand afterwards" 34 | } -------------------------------------------------------------------------------- /siim_thierry_cbct-teeth-001/ImagingStudy/imaging_study.1.3.46.670589.45.1.1.4993912214784.1.5436.1538560375246.json: -------------------------------------------------------------------------------- 1 | { 2 | "resourceType": "ImagingStudy", 3 | "id": "D18-3001", 4 | "text": { 5 | "status": "generated", 6 | "div": "
ImagingStudy Resource
" 7 | }, 8 | "identifier": [ 9 | { 10 | "system": "urn:dicom:uid", 11 | "value": "1.3.46.670589.45.1.1.4993912214784.1.5436.1538560375246" 12 | }, 13 | { 14 | "use": "usual", 15 | "type": { 16 | "coding": [ 17 | { 18 | "system": "http://terminology.hl7.org/CodeSystem/v2-0203", 19 | "code": "ACSN" 20 | } 21 | ] 22 | }, 23 | "value": "D18-3001", 24 | "assigner": { 25 | "reference": "Organization/siim" 26 | } 27 | } 28 | ], 29 | "status": "available", 30 | "subject": { 31 | "reference": "Patient/siimthierry" 32 | }, 33 | "description": "", 34 | "started": "2018-10-03", 35 | "endpoint": [ 36 | { 37 | "reference": "Endpoint/siim-dicomweb" 38 | } 39 | ], 40 | "numberOfSeries": 1, 41 | "numberOfInstances": 4 42 | } -------------------------------------------------------------------------------- /spec/allergy_intolerance_spec.rb: -------------------------------------------------------------------------------- 1 | # Allergy Intolerance Spec 2 | 3 | # Load the FHIR server info 4 | server = YAML.load_file('fhir_server.yml') 5 | resource = JSON.parse(File.read("siim_sally-breastdx-01-0003/AllergyIntolerance/allergy_intolerance.breastdx.json")) 6 | 7 | def test_allergy_intolerance(server, resource) 8 | RSpec.describe '#delete' do 9 | result = fhir_delete(server, resource) 10 | 11 | it {expect(result.code).to be >= 200} 12 | it {expect(result.code).to be <= 204} 13 | 14 | end 15 | 16 | RSpec.describe '#put' do 17 | 18 | begin 19 | result = fhir_put(server, resource) 20 | rescue => e 21 | puts e.inspect 22 | end 23 | 24 | it {expect(result.code).to eq 200} 25 | 26 | end 27 | 28 | RSpec.describe '#get' do 29 | 30 | result = fhir_get(server, resource) 31 | 32 | it {expect(result.code).to eq 200} 33 | 34 | # need to remove the metadata and other keys from the server version 35 | json = JSON.parse(result) 36 | json.delete('meta') 37 | json.delete('lastUpdated') 38 | 39 | resource['reporter']['reference'] = server[:url] + resource['reporter']['reference'] 40 | resource['patient']['reference'] = server[:url] + resource['patient']['reference'] 41 | 42 | fhir_resource_compare(server, resource, json) 43 | 44 | end 45 | 46 | end 47 | 48 | Dir.glob("**/AllergyIntolerance/*") do |f| 49 | resource = JSON.parse(File.read(f)) 50 | puts "Testing resource: #{f}" 51 | test_allergy_intolerance(server, resource) 52 | end -------------------------------------------------------------------------------- /spec/condition_spec.rb: -------------------------------------------------------------------------------- 1 | # Condition Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | resource = JSON.parse(File.read("siim_joe-tcga-17-z058/Condition/condition.z058.json")) 6 | 7 | def test_condition(server, resource) 8 | 9 | RSpec.describe '#delete' do 10 | result = fhir_delete(server, resource) 11 | 12 | it {expect(result.code).to be >= 200} 13 | it {expect(result.code).to be <= 204} 14 | 15 | end 16 | 17 | RSpec.describe '#put' do 18 | 19 | begin 20 | result = fhir_put(server, resource) 21 | rescue => e 22 | puts e.inspect 23 | end 24 | 25 | it {expect(result.code).to eq 200} 26 | 27 | end 28 | 29 | RSpec.describe '#get' do 30 | 31 | result = fhir_get(server, resource) 32 | 33 | it {expect(result.code).to eq 200} 34 | 35 | # need to remove the metadata and other keys from the server version 36 | json = JSON.parse(result) 37 | 38 | fhir_resource_compare(server, resource, json) 39 | 40 | end 41 | 42 | end 43 | 44 | Dir.glob("**/Condition/*") do |f| 45 | resource = JSON.parse(File.read(f)) 46 | puts "Testing resource: #{f}" 47 | test_condition(server, resource) 48 | end -------------------------------------------------------------------------------- /spec/diagnostic_report_spec.rb: -------------------------------------------------------------------------------- 1 | # DiagnosticReport Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_diagnostic_report(resource, server) 6 | 7 | RSpec.describe '#delete' do 8 | result = fhir_delete(server, resource) 9 | it {expect(result.code).to be >= 200} 10 | it {expect(result.code).to be <= 204} 11 | 12 | end 13 | 14 | RSpec.describe '#put' do 15 | 16 | begin 17 | result = fhir_put(server, resource) 18 | rescue => e 19 | puts e.inspect 20 | end 21 | 22 | it {expect(result.code).to eq 200} 23 | 24 | end 25 | 26 | RSpec.describe '#get' do 27 | 28 | result = fhir_get(server, resource) 29 | 30 | it {expect(result.code).to eq 200} 31 | 32 | # need to remove the metadata and other keys from the server version 33 | json = JSON.parse(result) 34 | 35 | # Update these to be absolute URLs rather than the relative URLs listed in the resource 36 | resource['performer']['reference'] = server[:url] + resource['performer']['reference'] 37 | resource['subject']['reference'] = server[:url] + resource['subject']['reference'] 38 | 39 | fhir_resource_compare(server, resource, json) 40 | 41 | end 42 | end 43 | 44 | Dir.glob("**/DiagnosticReport/*") do |f| 45 | resource = JSON.parse(File.read(f)) 46 | puts "Testing resource: #{f}" 47 | test_diagnostic_report(resource, server) 48 | end -------------------------------------------------------------------------------- /spec/imaging_study_spec.rb: -------------------------------------------------------------------------------- 1 | # ImagingStudy Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_imaging_study(server, resource) 6 | RSpec.describe '#delete' do 7 | result = fhir_delete(server, resource) 8 | 9 | it {expect(result.code).to be >= 200} 10 | it {expect(result.code).to be <= 204} 11 | 12 | end 13 | 14 | RSpec.describe '#put' do 15 | 16 | begin 17 | result = fhir_put(server, resource) 18 | rescue => e 19 | puts e.inspect 20 | end 21 | 22 | it {expect(result.code).to eq 200} 23 | 24 | end 25 | 26 | RSpec.describe '#get' do 27 | 28 | result = fhir_get(server, resource) 29 | 30 | it {expect(result.code).to eq 200} 31 | 32 | # need to remove the metadata and other keys from the server version 33 | json = JSON.parse(result) 34 | json.delete('meta') 35 | json.delete('lastUpdated') 36 | 37 | resource['patient']['reference'] = server[:url] + resource['patient']['reference'] 38 | 39 | fhir_resource_compare(server, resource, json) 40 | 41 | end 42 | end 43 | 44 | Dir.glob("**/ImagingStudy/*") do |f| 45 | resource = JSON.parse(File.read(f)) 46 | puts "Testing resource: #{f}" 47 | test_imaging_study(server, resource) 48 | end -------------------------------------------------------------------------------- /spec/medication_request_spec.rb: -------------------------------------------------------------------------------- 1 | # MedicationRequest Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_medication_request(server, resource) 6 | RSpec.describe '#delete' do 7 | 8 | result = fhir_delete(server, resource) 9 | it {expect(result.code).to be >= 200} 10 | it {expect(result.code).to be <= 204} 11 | 12 | end 13 | 14 | RSpec.describe '#put' do 15 | 16 | begin 17 | result = fhir_put(server, resource) 18 | rescue => e 19 | puts e.inspect 20 | end 21 | 22 | it {expect(result.code).to eq 200} 23 | 24 | end 25 | 26 | RSpec.describe '#get' do 27 | 28 | result = fhir_get(server, resource) 29 | 30 | it {expect(result.code).to eq 200} 31 | 32 | # need to remove the metadata and other keys from the server version 33 | json = JSON.parse(result) 34 | json.delete('meta') 35 | json.delete('lastUpdated') 36 | 37 | resource['patient']['reference'] = server[:url] + resource['patient']['reference'] 38 | resource['prescriber']['reference'] = server[:url] + resource['prescriber']['reference'] 39 | resource['medicationReference']['reference'] = server[:url] + resource['medicationReference']['reference'] 40 | 41 | fhir_resource_compare(server, resource, json) 42 | 43 | end 44 | 45 | end 46 | 47 | Dir.glob("**/MedicationRequest/*") do |f| 48 | resource = JSON.parse(File.read(f)) 49 | puts "Testing resource: #{f}" 50 | test_medication_request(server, resource) 51 | end -------------------------------------------------------------------------------- /spec/medication_spec.rb: -------------------------------------------------------------------------------- 1 | # Medication Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_medication(server, resource) 6 | 7 | RSpec.describe '#put' do 8 | 9 | begin 10 | result = fhir_put(server, resource) 11 | rescue => e 12 | puts e.inspect 13 | end 14 | 15 | it {expect(result.code).to eq 200} 16 | 17 | end 18 | 19 | RSpec.describe '#get' do 20 | 21 | result = fhir_get(server, resource) 22 | 23 | it {expect(result.code).to eq 200} 24 | 25 | # need to remove the metadata and other keys from the server version 26 | json = JSON.parse(result) 27 | 28 | fhir_resource_compare(server, resource, json) 29 | 30 | end 31 | end 32 | 33 | Dir.glob("**/Medication/*") do |f| 34 | resource = JSON.parse(File.read(f)) 35 | puts "Testing resource: #{f}" 36 | test_medication(server, resource) 37 | end -------------------------------------------------------------------------------- /spec/organization_spec.rb: -------------------------------------------------------------------------------- 1 | # Medication Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_organization(server, resource) 6 | 7 | RSpec.describe '#put' do 8 | 9 | begin 10 | result = fhir_put(server, resource) 11 | rescue => e 12 | puts e.inspect 13 | end 14 | 15 | it {expect(result.code).to eq 200} 16 | 17 | end 18 | 19 | RSpec.describe '#get' do 20 | 21 | result = fhir_get(server, resource) 22 | 23 | it {expect(result.code).to eq 200} 24 | 25 | # need to remove the metadata and other keys from the server version 26 | json = JSON.parse(result) 27 | json.delete('meta') 28 | json.delete('lastUpdated') 29 | 30 | fhir_resource_compare(server, resource, json) 31 | end 32 | 33 | end 34 | 35 | Dir.glob("**/Organization/*") do |f| 36 | resource = JSON.parse(File.read(f)) 37 | puts "Testing resource: #{f}" 38 | test_organization(server, resource) 39 | end -------------------------------------------------------------------------------- /spec/patient_spec.rb: -------------------------------------------------------------------------------- 1 | # Patient Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_patient(server, resource) 6 | 7 | RSpec.describe '#put' do 8 | 9 | begin 10 | result = fhir_put(server, resource) 11 | rescue => e 12 | puts e.inspect 13 | end 14 | 15 | it {expect(result.code).to eq 200} 16 | 17 | end 18 | 19 | RSpec.describe '#get' do 20 | 21 | result = fhir_get(server, resource) 22 | 23 | it {expect(result.code).to eq 200} 24 | 25 | # need to remove the metadata and other keys from the server version 26 | json = JSON.parse(result) 27 | json.delete('meta') 28 | json.delete('lastUpdated') 29 | 30 | resource['managingOrganization']['reference'] = server[:url] + resource['managingOrganization']['reference'] 31 | 32 | fhir_resource_compare(server, resource, json) 33 | 34 | end 35 | end 36 | 37 | Dir.glob("**/Patient/*") do |f| 38 | resource = JSON.parse(File.read(f)) 39 | puts "Testing resource: #{f}" 40 | test_patient(server, resource) 41 | end 42 | -------------------------------------------------------------------------------- /spec/practitioner_spec.rb: -------------------------------------------------------------------------------- 1 | # Practitioner Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_practitioner(server, resource) 6 | 7 | RSpec.describe '#put' do 8 | 9 | begin 10 | result = fhir_put(server, resource) 11 | rescue => e 12 | puts e.inspect 13 | end 14 | 15 | it {expect(result.code).to eq 200} 16 | 17 | end 18 | 19 | RSpec.describe '#get' do 20 | 21 | result = fhir_get(server, resource) 22 | 23 | it {expect(result.code).to eq 200} 24 | 25 | # need to remove the metadata and other keys from the server version 26 | json = JSON.parse(result) 27 | json.delete('meta') 28 | json.delete('lastUpdated') 29 | 30 | fhir_resource_compare(server, resource, json) 31 | end 32 | 33 | end 34 | 35 | Dir.glob("**/Practitioner/*") do |f| 36 | resource = JSON.parse(File.read(f)) 37 | puts "Testing resource: #{f}" 38 | test_practitioner(server, resource) 39 | end -------------------------------------------------------------------------------- /spec/specimen_spec.rb: -------------------------------------------------------------------------------- 1 | # Specimen Spec 2 | 3 | server = YAML.load_file('fhir_server.yml') 4 | 5 | def test_specimen(server, resource) 6 | 7 | RSpec.describe '#put' do 8 | 9 | begin 10 | result = fhir_put(server, resource) 11 | rescue => e 12 | puts e.inspect 13 | end 14 | 15 | it {expect(result.code).to eq 200} 16 | 17 | end 18 | 19 | RSpec.describe '#get' do 20 | 21 | result = fhir_get(server, resource) 22 | 23 | it {expect(result.code).to eq 200} 24 | 25 | # need to remove the metadata and other keys from the server version 26 | json = JSON.parse(result) 27 | json.delete('meta') 28 | json.delete('lastUpdated') 29 | 30 | fhir_resource_compare(server, resource, json) 31 | end 32 | 33 | end 34 | 35 | Dir.glob("**/Specimen/*") do |f| 36 | resource = JSON.parse(File.read(f)) 37 | puts "Testing resource: #{f}" 38 | test_specimen(server, resource) 39 | end --------------------------------------------------------------------------------