├── .github └── workflows │ └── make_and_test.yml ├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── bin.7z ├── doc ├── Image.mhd ├── input_pnflow.dat ├── libvoxel_commands.md ├── pnextract_guide.pdf ├── pnflow_guide.pdf └── poreflow_ValvatneAndBlunt2004.pdf ├── pkgs ├── hypre │ ├── .readthedocs.yml │ ├── CHANGELOG │ ├── COPYRIGHT │ ├── INSTALL.md │ ├── LICENSE-APACHE │ ├── LICENSE-MIT │ ├── NOTICE │ ├── README.md │ ├── SUPPORT.md │ └── src │ │ ├── CMakeLists.txt │ │ ├── FEI_mv │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ ├── fei-hypre │ │ │ ├── CHANGELOG │ │ │ ├── CMakeLists.txt │ │ │ ├── FEI_HYPRE_Impl.cxx │ │ │ ├── FEI_HYPRE_Impl.h │ │ │ ├── FEI_HYPRE_include.h │ │ │ ├── HYPRE_Builder.h │ │ │ ├── HYPRE_FEI.doc │ │ │ ├── HYPRE_FEI.h │ │ │ ├── HYPRE_FEI_includes.h │ │ │ ├── HYPRE_LSC_aux.cxx │ │ │ ├── HYPRE_LSI_Dsuperlu.c │ │ │ ├── HYPRE_LSI_Dsuperlu.h │ │ │ ├── HYPRE_LSI_UZAWA.cxx │ │ │ ├── HYPRE_LSI_UZAWA.h │ │ │ ├── HYPRE_LSI_Uzawa_c.h │ │ │ ├── HYPRE_LSI_blkprec.cxx │ │ │ ├── HYPRE_LSI_blkprec.h │ │ │ ├── HYPRE_LSI_block.h │ │ │ ├── HYPRE_LSI_ddict.c │ │ │ ├── HYPRE_LSI_ddict.h │ │ │ ├── HYPRE_LSI_ddilut.c │ │ │ ├── HYPRE_LSI_ddilut.h │ │ │ ├── HYPRE_LSI_ml.c │ │ │ ├── HYPRE_LSI_mli.cxx │ │ │ ├── HYPRE_LSI_mli.h │ │ │ ├── HYPRE_LSI_mlmaxwell.c │ │ │ ├── HYPRE_LSI_poly.c │ │ │ ├── HYPRE_LSI_poly.h │ │ │ ├── HYPRE_LSI_schur.cxx │ │ │ ├── HYPRE_LSI_schur.h │ │ │ ├── HYPRE_LSI_schwarz.c │ │ │ ├── HYPRE_LSI_schwarz.h │ │ │ ├── HYPRE_LinSysCore.cxx │ │ │ ├── HYPRE_LinSysCore.h │ │ │ ├── HYPRE_MHMatrix.h │ │ │ ├── HYPRE_MLMatrix.h │ │ │ ├── HYPRE_MLMaxwell.h │ │ │ ├── HYPRE_SlideReduction.cxx │ │ │ ├── HYPRE_SlideReduction.h │ │ │ ├── HYPRE_fei_matrix.cxx │ │ │ ├── HYPRE_fei_mesh.cxx │ │ │ ├── HYPRE_fei_mv.h │ │ │ ├── HYPRE_fei_vector.cxx │ │ │ ├── HYPRE_parcsr_TFQmr.c │ │ │ ├── HYPRE_parcsr_TFQmr.h │ │ │ ├── HYPRE_parcsr_bicgs.c │ │ │ ├── HYPRE_parcsr_bicgs.h │ │ │ ├── HYPRE_parcsr_bicgstabl.c │ │ │ ├── HYPRE_parcsr_bicgstabl.h │ │ │ ├── HYPRE_parcsr_fgmres.c │ │ │ ├── HYPRE_parcsr_fgmres.h │ │ │ ├── HYPRE_parcsr_lsicg.c │ │ │ ├── HYPRE_parcsr_lsicg.h │ │ │ ├── HYPRE_parcsr_maxwell.c │ │ │ ├── HYPRE_parcsr_superlu.c │ │ │ ├── HYPRE_parcsr_superlu.h │ │ │ ├── HYPRE_parcsr_symqmr.c │ │ │ ├── HYPRE_parcsr_symqmr.h │ │ │ ├── LLNL_FEI.doc │ │ │ ├── LLNL_FEI_Fei.cxx │ │ │ ├── LLNL_FEI_Fei.h │ │ │ ├── LLNL_FEI_Impl.cxx │ │ │ ├── LLNL_FEI_Impl.h │ │ │ ├── LLNL_FEI_LSCore.cxx │ │ │ ├── LLNL_FEI_LSCore.h │ │ │ ├── LLNL_FEI_Matrix.cxx │ │ │ ├── LLNL_FEI_Matrix.h │ │ │ ├── LLNL_FEI_Solver.cxx │ │ │ ├── LLNL_FEI_Solver.h │ │ │ ├── Makefile │ │ │ ├── SymQMR.c │ │ │ ├── TFQmr.c │ │ │ ├── _hypre_FEI.h │ │ │ ├── bicgs.c │ │ │ ├── bicgstabl.c │ │ │ ├── cfei-hypre.h │ │ │ ├── cfei_hypre.cxx │ │ │ ├── cfei_hypre.h │ │ │ ├── driver.C │ │ │ ├── driver.cxx │ │ │ ├── fei_mv.h │ │ │ ├── fgmres.c │ │ │ ├── hypre_cfei.cxx │ │ │ ├── hypre_cfei.h │ │ │ ├── hypre_lsi_amge.c │ │ │ ├── hypre_lsi_ddamg.c │ │ │ ├── hypre_lsi_misc.c │ │ │ ├── hypre_schur_reduce.cxx │ │ │ ├── hypre_slide_reduce.cxx │ │ │ ├── lsicg.c │ │ │ └── ml_maxwell.cxx │ │ └── femli │ │ │ ├── CMakeLists.txt │ │ │ ├── Makefile │ │ │ ├── Usage_amgs │ │ │ ├── Usage_solver │ │ │ ├── cmli.cxx │ │ │ ├── cmli.h │ │ │ ├── driver_fedata.cxx │ │ │ ├── driver_matrix.cxx │ │ │ ├── driver_util.c │ │ │ ├── genTecPlot.c │ │ │ ├── mli.cxx │ │ │ ├── mli.h │ │ │ ├── mli_amgsa_calib.cxx │ │ │ ├── mli_amgsa_coarsen1.cxx │ │ │ ├── mli_amgsa_dd_fedata.cxx │ │ │ ├── mli_amgsa_dd_sfei.cxx │ │ │ ├── mli_amgsa_elem.cxx │ │ │ ├── mli_defs.h │ │ │ ├── mli_febase.cxx │ │ │ ├── mli_febase.h │ │ │ ├── mli_fedata.cxx │ │ │ ├── mli_fedata.h │ │ │ ├── mli_fedata_utils.cxx │ │ │ ├── mli_fedata_utils.h │ │ │ ├── mli_festruct.h │ │ │ ├── mli_mapper.cxx │ │ │ ├── mli_mapper.h │ │ │ ├── mli_matrix.cxx │ │ │ ├── mli_matrix.h │ │ │ ├── mli_matrix_misc.h │ │ │ ├── mli_matrix_mult.cxx │ │ │ ├── mli_matrix_utils.cxx │ │ │ ├── mli_method.cxx │ │ │ ├── mli_method.h │ │ │ ├── mli_method_amgcr.cxx │ │ │ ├── mli_method_amgcr.h │ │ │ ├── mli_method_amgrs.cxx │ │ │ ├── mli_method_amgrs.h │ │ │ ├── mli_method_amgsa.cxx │ │ │ ├── mli_method_amgsa.h │ │ │ ├── mli_olapdd.c │ │ │ ├── mli_oneLevel.cxx │ │ │ ├── mli_oneLevel.h │ │ │ ├── mli_sfei.cxx │ │ │ ├── mli_sfei.h │ │ │ ├── mli_solver.cxx │ │ │ ├── mli_solver.h │ │ │ ├── mli_solver_amg.cxx │ │ │ ├── mli_solver_amg.h │ │ │ ├── mli_solver_arpacksuperlu.cxx │ │ │ ├── mli_solver_arpacksuperlu.h │ │ │ ├── mli_solver_bjacobi.cxx │ │ │ ├── mli_solver_bjacobi.h │ │ │ ├── mli_solver_bsgs.cxx │ │ │ ├── mli_solver_bsgs.h │ │ │ ├── mli_solver_cg.cxx │ │ │ ├── mli_solver_cg.h │ │ │ ├── mli_solver_chebyshev.cxx │ │ │ ├── mli_solver_chebyshev.h │ │ │ ├── mli_solver_gmres.cxx │ │ │ ├── mli_solver_gmres.h │ │ │ ├── mli_solver_gs.cxx │ │ │ ├── mli_solver_gs.h │ │ │ ├── mli_solver_hschwarz.cxx │ │ │ ├── mli_solver_hschwarz.h │ │ │ ├── mli_solver_hsgs.cxx │ │ │ ├── mli_solver_hsgs.h │ │ │ ├── mli_solver_jacobi.cxx │ │ │ ├── mli_solver_jacobi.h │ │ │ ├── mli_solver_kaczmarz.cxx │ │ │ ├── mli_solver_kaczmarz.h │ │ │ ├── mli_solver_mli.cxx │ │ │ ├── mli_solver_mli.h │ │ │ ├── mli_solver_mls.cxx │ │ │ ├── mli_solver_mls.h │ │ │ ├── mli_solver_parasails.cxx │ │ │ ├── mli_solver_parasails.h │ │ │ ├── mli_solver_seqsuperlu.cxx │ │ │ ├── mli_solver_seqsuperlu.h │ │ │ ├── mli_solver_sgs.cxx │ │ │ ├── mli_solver_sgs.h │ │ │ ├── mli_solver_superlu.cxx │ │ │ ├── mli_solver_superlu.h │ │ │ ├── mli_utils.c │ │ │ ├── mli_utils.h │ │ │ ├── mli_utils_fortran.f │ │ │ ├── mli_vector.cxx │ │ │ └── mli_vector.h │ │ ├── HYPRE.h │ │ ├── HYPREf.h │ │ ├── IJ_mv │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_IJMatrix.c │ │ ├── F90_HYPRE_IJVector.c │ │ ├── F90_IJMatrix.c │ │ ├── HYPRE_IJMatrix.c │ │ ├── HYPRE_IJVector.c │ │ ├── HYPRE_IJ_mv.h │ │ ├── IJMatrix.c │ │ ├── IJMatrix_isis.c │ │ ├── IJMatrix_parcsr.c │ │ ├── IJMatrix_parcsr_device.c │ │ ├── IJMatrix_petsc.c │ │ ├── IJVector.c │ │ ├── IJVector_parcsr.c │ │ ├── IJVector_parcsr_device.c │ │ ├── IJ_assumed_part.c │ │ ├── IJ_matrix.h │ │ ├── IJ_vector.h │ │ ├── Makefile │ │ ├── _hypre_IJ_mv.h │ │ ├── aux_par_vector.c │ │ ├── aux_par_vector.h │ │ ├── aux_parcsr_matrix.c │ │ ├── aux_parcsr_matrix.h │ │ └── headers │ │ ├── Makefile │ │ ├── blas │ │ ├── CMakeLists.txt │ │ ├── COPYING │ │ ├── Makefile │ │ ├── README │ │ ├── _hypre_blas.h │ │ ├── dasum.c │ │ ├── daxpy.c │ │ ├── dcopy.c │ │ ├── ddot.c │ │ ├── dgemm.c │ │ ├── dgemv.c │ │ ├── dger.c │ │ ├── dnrm2.c │ │ ├── drot.c │ │ ├── dscal.c │ │ ├── dswap.c │ │ ├── dsymm.c │ │ ├── dsymv.c │ │ ├── dsyr2.c │ │ ├── dsyr2k.c │ │ ├── dsyrk.c │ │ ├── dtrmm.c │ │ ├── dtrmv.c │ │ ├── dtrsm.c │ │ ├── dtrsv.c │ │ ├── f2c.c │ │ ├── f2c.h │ │ ├── hypre_blas.h │ │ ├── idamax.c │ │ ├── lsame.c │ │ └── xerbla.c │ │ ├── cmbuild │ │ └── README.txt │ │ ├── config │ │ ├── HYPREConfig.cmake.in │ │ ├── HYPRE_config.h.cmake.in │ │ ├── HYPRE_config.h.in │ │ ├── Makefile.config.in │ │ ├── bootstrap │ │ ├── cmake │ │ │ └── hypre_CMakeUtilities.cmake │ │ ├── compile │ │ ├── config.guess │ │ ├── config.sub │ │ ├── configure.in │ │ ├── depcomp │ │ ├── hypre_blas_macros.m4 │ │ ├── hypre_lapack_macros.m4 │ │ ├── hypre_macros_misc.m4 │ │ ├── install-sh │ │ ├── missing │ │ ├── mkinstalldirs │ │ └── windows.sh │ │ ├── configure │ │ ├── distributed_ls │ │ ├── CMakeLists.txt │ │ ├── Euclid │ │ │ ├── CMakeLists.txt │ │ │ ├── Euclid_apply.c │ │ │ ├── Euclid_dh.c │ │ │ ├── Euclid_dh.h │ │ │ ├── ExternalRows_dh.c │ │ │ ├── ExternalRows_dh.h │ │ │ ├── Factor_dh.c │ │ │ ├── Factor_dh.h │ │ │ ├── Hash_dh.c │ │ │ ├── Hash_dh.h │ │ │ ├── Hash_i_dh.c │ │ │ ├── Hash_i_dh.h │ │ │ ├── Makefile │ │ │ ├── MatGenFD.c │ │ │ ├── MatGenFD.h │ │ │ ├── Mat_dh.c │ │ │ ├── Mat_dh.h │ │ │ ├── Mem_dh.c │ │ │ ├── Mem_dh.h │ │ │ ├── Numbering_dh.c │ │ │ ├── Numbering_dh.h │ │ │ ├── Parser_dh.c │ │ │ ├── Parser_dh.h │ │ │ ├── README.hypre │ │ │ ├── SortedList_dh.c │ │ │ ├── SortedList_dh.h │ │ │ ├── SortedSet_dh.c │ │ │ ├── SortedSet_dh.h │ │ │ ├── SubdomainGraph_dh.c │ │ │ ├── SubdomainGraph_dh.h │ │ │ ├── TimeLog_dh.c │ │ │ ├── TimeLog_dh.h │ │ │ ├── Timer_dh.c │ │ │ ├── Timer_dh.h │ │ │ ├── Vec_dh.c │ │ │ ├── Vec_dh.h │ │ │ ├── _hypre_Euclid.h │ │ │ ├── blas_dh.c │ │ │ ├── blas_dh.h │ │ │ ├── euclid_common.h │ │ │ ├── euclid_config.h │ │ │ ├── getRow_dh.c │ │ │ ├── getRow_dh.h │ │ │ ├── globalObjects.c │ │ │ ├── guards_dh.h │ │ │ ├── headers │ │ │ ├── ilu_dh.h │ │ │ ├── ilu_mpi_bj.c │ │ │ ├── ilu_mpi_pilu.c │ │ │ ├── ilu_seq.c │ │ │ ├── io_dh.c │ │ │ ├── io_dh.h │ │ │ ├── krylov_dh.c │ │ │ ├── krylov_dh.h │ │ │ ├── macros_dh.h │ │ │ ├── mat_dh_private.c │ │ │ ├── mat_dh_private.h │ │ │ ├── shellSort_dh.c │ │ │ ├── shellSort_dh.h │ │ │ ├── sig_dh.c │ │ │ └── sig_dh.h │ │ ├── Makefile │ │ ├── ParaSails │ │ │ ├── CMakeLists.txt │ │ │ ├── Common.h │ │ │ ├── ConjGrad.c │ │ │ ├── ConjGrad.h │ │ │ ├── DiagScale.c │ │ │ ├── DiagScale.h │ │ │ ├── FGmres.c │ │ │ ├── Hash.c │ │ │ ├── Hash.h │ │ │ ├── LoadBal.c │ │ │ ├── LoadBal.h │ │ │ ├── Makefile │ │ │ ├── Matrix.c │ │ │ ├── Matrix.h │ │ │ ├── Mem.c │ │ │ ├── Mem.h │ │ │ ├── Numbering.c │ │ │ ├── Numbering.h │ │ │ ├── OrderStat.c │ │ │ ├── OrderStat.h │ │ │ ├── ParaSails.c │ │ │ ├── ParaSails.h │ │ │ ├── PrunedRows.c │ │ │ ├── PrunedRows.h │ │ │ ├── RowPatt.c │ │ │ ├── RowPatt.h │ │ │ ├── StoredRows.c │ │ │ ├── StoredRows.h │ │ │ ├── convert.c │ │ │ ├── hypre_ParaSails.c │ │ │ ├── hypre_ParaSails.h │ │ │ └── permute.c │ │ └── pilut │ │ │ ├── CMakeLists.txt │ │ │ ├── DistributedMatrixPilutSolver.h │ │ │ ├── HYPRE_DistributedMatrixPilutSolver.c │ │ │ ├── HYPRE_DistributedMatrixPilutSolver_protos.h │ │ │ ├── HYPRE_DistributedMatrixPilutSolver_types.h │ │ │ ├── Makefile │ │ │ ├── comm.c │ │ │ ├── const.h │ │ │ ├── debug.c │ │ │ ├── distributed_qsort.c │ │ │ ├── distributed_qsort_si.c │ │ │ ├── ilu.h │ │ │ ├── ilut.c │ │ │ ├── internal_protos.h │ │ │ ├── macros.h │ │ │ ├── parilut.c │ │ │ ├── parutil.c │ │ │ ├── pblas1.c │ │ │ ├── serilut.c │ │ │ ├── struct.h │ │ │ ├── trifactor.c │ │ │ └── util.c │ │ ├── distributed_matrix │ │ ├── CMakeLists.txt │ │ ├── HYPRE_distributed_matrix.c │ │ ├── HYPRE_distributed_matrix_mv.h │ │ ├── HYPRE_distributed_matrix_protos.h │ │ ├── HYPRE_distributed_matrix_types.h │ │ ├── Makefile │ │ ├── distributed_matrix.c │ │ ├── distributed_matrix.h │ │ ├── distributed_matrix_ISIS.c │ │ ├── distributed_matrix_ISIS.cc │ │ ├── distributed_matrix_PETSc.c │ │ ├── distributed_matrix_parcsr.c │ │ └── internal_protos.h │ │ ├── krylov │ │ ├── CMakeLists.txt │ │ ├── HYPRE_MatvecFunctions.h │ │ ├── HYPRE_bicgstab.c │ │ ├── HYPRE_cgnr.c │ │ ├── HYPRE_cogmres.c │ │ ├── HYPRE_flexgmres.c │ │ ├── HYPRE_gmres.c │ │ ├── HYPRE_krylov.h │ │ ├── HYPRE_lgmres.c │ │ ├── HYPRE_lobpcg.c │ │ ├── HYPRE_lobpcg.h │ │ ├── HYPRE_pcg.c │ │ ├── Makefile │ │ ├── bicgstab.c │ │ ├── bicgstab.h │ │ ├── cgnr.c │ │ ├── cgnr.h │ │ ├── cogmres.c │ │ ├── cogmres.h │ │ ├── flexgmres.c │ │ ├── flexgmres.h │ │ ├── gmres.c │ │ ├── gmres.h │ │ ├── headers │ │ ├── krylov.h │ │ ├── lgmres.c │ │ ├── lgmres.h │ │ ├── lobpcg.c │ │ ├── lobpcg.h │ │ ├── pcg.c │ │ └── pcg.h │ │ ├── lapack │ │ ├── CMakeLists.txt │ │ ├── COPYING │ │ ├── Makefile │ │ ├── README │ │ ├── _hypre_lapack.h │ │ ├── dbdsqr.c │ │ ├── dgebd2.c │ │ ├── dgebrd.c │ │ ├── dgelq2.c │ │ ├── dgelqf.c │ │ ├── dgels.c │ │ ├── dgeqr2.c │ │ ├── dgeqrf.c │ │ ├── dgesvd.c │ │ ├── dgetf2.c │ │ ├── dgetrf.c │ │ ├── dgetri.c │ │ ├── dgetrs.c │ │ ├── dlabad.c │ │ ├── dlabrd.c │ │ ├── dlacpy.c │ │ ├── dlae2.c │ │ ├── dlaev2.c │ │ ├── dlamch.c │ │ ├── dlange.c │ │ ├── dlanst.c │ │ ├── dlansy.c │ │ ├── dlapy2.c │ │ ├── dlarf.c │ │ ├── dlarfb.c │ │ ├── dlarfg.c │ │ ├── dlarft.c │ │ ├── dlartg.c │ │ ├── dlas2.c │ │ ├── dlascl.c │ │ ├── dlaset.c │ │ ├── dlasq1.c │ │ ├── dlasq2.c │ │ ├── dlasq3.c │ │ ├── dlasq4.c │ │ ├── dlasq5.c │ │ ├── dlasq6.c │ │ ├── dlasr.c │ │ ├── dlasrt.c │ │ ├── dlassq.c │ │ ├── dlasv2.c │ │ ├── dlaswp.c │ │ ├── dlatrd.c │ │ ├── dorg2l.c │ │ ├── dorg2r.c │ │ ├── dorgbr.c │ │ ├── dorgl2.c │ │ ├── dorglq.c │ │ ├── dorgql.c │ │ ├── dorgqr.c │ │ ├── dorgtr.c │ │ ├── dorm2r.c │ │ ├── dormbr.c │ │ ├── dorml2.c │ │ ├── dormlq.c │ │ ├── dormqr.c │ │ ├── dpotf2.c │ │ ├── dpotrf.c │ │ ├── dpotrs.c │ │ ├── dsteqr.c │ │ ├── dsterf.c │ │ ├── dsyev.c │ │ ├── dsygs2.c │ │ ├── dsygst.c │ │ ├── dsygv.c │ │ ├── dsytd2.c │ │ ├── dsytrd.c │ │ ├── dtrti2.c │ │ ├── dtrtri.c │ │ ├── f2c.h │ │ ├── hypre_lapack.h │ │ ├── ieeeck.c │ │ ├── ilaenv.c │ │ ├── lsame.c │ │ └── xerbla.c │ │ ├── lib │ │ └── Makefile │ │ ├── matrix_matrix │ │ ├── CMakeLists.txt │ │ ├── HYPRE_BuildIJMatrixFromDistributedMatrix.c │ │ ├── HYPRE_ConvertPETScMatrixToDistributedMatrix.c │ │ ├── HYPRE_ConvertParCSRMatrixToDistributedMatrix.c │ │ ├── HYPRE_matrix_matrix_protos.h │ │ ├── Makefile │ │ └── internal_protos.h │ │ ├── multivector │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ ├── backup.c │ │ ├── csr_matmultivec.c │ │ ├── csr_matmultivec.h │ │ ├── interpreter.h │ │ ├── multivector.c │ │ ├── multivector.h │ │ ├── par_csr_matmultivec.c │ │ ├── par_csr_matmultivec.h │ │ ├── par_csr_pmvcomm.c │ │ ├── par_csr_pmvcomm.h │ │ ├── par_multivector.c │ │ ├── par_multivector.h │ │ ├── seq_multivector.c │ │ ├── seq_multivector.h │ │ ├── temp_multivector.c │ │ └── temp_multivector.h │ │ ├── nopoe │ │ ├── parcsr_block_mv │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ ├── _hypre_parcsr_block_mv.h │ │ ├── csr_block_matop.c │ │ ├── csr_block_matrix.c │ │ ├── csr_block_matrix.h │ │ ├── csr_block_matvec.c │ │ ├── driver_matvec.c │ │ ├── par_block_nodal_systems.c │ │ ├── par_csr_block_comm.c │ │ ├── par_csr_block_interp.c │ │ ├── par_csr_block_matrix.c │ │ ├── par_csr_block_matrix.h │ │ ├── par_csr_block_matvec.c │ │ ├── par_csr_block_rap.c │ │ ├── par_csr_block_rap_communication.c │ │ └── par_csr_block_relax.c │ │ ├── parcsr_ls │ │ ├── CMakeLists.txt │ │ ├── Common.h │ │ ├── F90_HYPRE_ams.c │ │ ├── F90_HYPRE_parcsr_Euclid.c │ │ ├── F90_HYPRE_parcsr_ParaSails.c │ │ ├── F90_HYPRE_parcsr_amg.c │ │ ├── F90_HYPRE_parcsr_bicgstab.c │ │ ├── F90_HYPRE_parcsr_block.c │ │ ├── F90_HYPRE_parcsr_cgnr.c │ │ ├── F90_HYPRE_parcsr_cogmres.c │ │ ├── F90_HYPRE_parcsr_flexgmres.c │ │ ├── F90_HYPRE_parcsr_gmres.c │ │ ├── F90_HYPRE_parcsr_hybrid.c │ │ ├── F90_HYPRE_parcsr_int.c │ │ ├── F90_HYPRE_parcsr_lgmres.c │ │ ├── F90_HYPRE_parcsr_pcg.c │ │ ├── F90_HYPRE_parcsr_pilut.c │ │ ├── F90_HYPRE_parcsr_schwarz.c │ │ ├── F90_hypre_laplace.c │ │ ├── HYPRE_ads.c │ │ ├── HYPRE_ame.c │ │ ├── HYPRE_ams.c │ │ ├── HYPRE_parcsr_Euclid.c │ │ ├── HYPRE_parcsr_ParaSails.c │ │ ├── HYPRE_parcsr_amg.c │ │ ├── HYPRE_parcsr_amgdd.c │ │ ├── HYPRE_parcsr_bicgstab.c │ │ ├── HYPRE_parcsr_block.c │ │ ├── HYPRE_parcsr_cgnr.c │ │ ├── HYPRE_parcsr_cogmres.c │ │ ├── HYPRE_parcsr_flexgmres.c │ │ ├── HYPRE_parcsr_gmres.c │ │ ├── HYPRE_parcsr_hybrid.c │ │ ├── HYPRE_parcsr_ilu.c │ │ ├── HYPRE_parcsr_int.c │ │ ├── HYPRE_parcsr_lgmres.c │ │ ├── HYPRE_parcsr_ls.h │ │ ├── HYPRE_parcsr_mgr.c │ │ ├── HYPRE_parcsr_ml.cpp │ │ ├── HYPRE_parcsr_pcg.c │ │ ├── HYPRE_parcsr_pilut.c │ │ ├── HYPRE_parcsr_schwarz.c │ │ ├── Makefile │ │ ├── _hypre_parcsr_ls.h │ │ ├── ads.c │ │ ├── ads.h │ │ ├── ame.c │ │ ├── ame.h │ │ ├── amg_hybrid.c │ │ ├── ams.c │ │ ├── ams.h │ │ ├── aux_interp.c │ │ ├── aux_interp.h │ │ ├── block_tridiag.c │ │ ├── block_tridiag.h │ │ ├── csr_block_matrix.h │ │ ├── driver.c │ │ ├── dsuperlu.c │ │ ├── dsuperlu.h │ │ ├── gen_redcs_mat.c │ │ ├── headers │ │ ├── par_2s_interp.c │ │ ├── par_2s_interp_device.c │ │ ├── par_add_cycle.c │ │ ├── par_amg.c │ │ ├── par_amg.h │ │ ├── par_amg_setup.c │ │ ├── par_amg_solve.c │ │ ├── par_amg_solveT.c │ │ ├── par_amgdd.c │ │ ├── par_amgdd.h │ │ ├── par_amgdd_comp_grid.c │ │ ├── par_amgdd_comp_grid.h │ │ ├── par_amgdd_fac_cycle.c │ │ ├── par_amgdd_fac_cycle_device.c │ │ ├── par_amgdd_helpers.c │ │ ├── par_amgdd_setup.c │ │ ├── par_amgdd_solve.c │ │ ├── par_cg_relax_wt.c │ │ ├── par_cgc_coarsen.c │ │ ├── par_cheby.c │ │ ├── par_coarse_parms.c │ │ ├── par_coarsen.c │ │ ├── par_coarsen_device.c │ │ ├── par_coordinates.c │ │ ├── par_cr.c │ │ ├── par_cycle.c │ │ ├── par_difconv.c │ │ ├── par_gauss_elim.c │ │ ├── par_gsmg.c │ │ ├── par_ilu.c │ │ ├── par_ilu.h │ │ ├── par_ilu_setup.c │ │ ├── par_ilu_solve.c │ │ ├── par_indepset.c │ │ ├── par_indepset_device.c │ │ ├── par_interp.c │ │ ├── par_interp_device.c │ │ ├── par_interp_trunc_device.c │ │ ├── par_jacobi_interp.c │ │ ├── par_krylov_func.c │ │ ├── par_laplace.c │ │ ├── par_laplace_27pt.c │ │ ├── par_laplace_9pt.c │ │ ├── par_lr_interp.c │ │ ├── par_lr_interp_device.c │ │ ├── par_lr_restr.c │ │ ├── par_mgr.c │ │ ├── par_mgr.h │ │ ├── par_mgr_setup.c │ │ ├── par_mgr_solve.c │ │ ├── par_mod_lr_interp.c │ │ ├── par_multi_interp.c │ │ ├── par_nodal_systems.c │ │ ├── par_nongalerkin.c │ │ ├── par_rap.c │ │ ├── par_rap_communication.c │ │ ├── par_relax.c │ │ ├── par_relax_interface.c │ │ ├── par_relax_more.c │ │ ├── par_restr.c │ │ ├── par_rotate_7pt.c │ │ ├── par_scaled_matnorm.c │ │ ├── par_schwarz.c │ │ ├── par_stats.c │ │ ├── par_strength.c │ │ ├── par_strength2nd_device.c │ │ ├── par_strength_device.c │ │ ├── par_sv_interp.c │ │ ├── par_sv_interp_ln.c │ │ ├── par_sv_interp_lsfit.c │ │ ├── par_vardifconv.c │ │ ├── par_vardifconv_rs.c │ │ ├── partial.c │ │ ├── protos.h │ │ ├── schwarz.c │ │ └── schwarz.h │ │ ├── parcsr_mv │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_parcsr_matrix.c │ │ ├── F90_HYPRE_parcsr_vector.c │ │ ├── F90_par_vector.c │ │ ├── F90_parcsr_matrix.c │ │ ├── HYPRE_parcsr_matrix.c │ │ ├── HYPRE_parcsr_mv.h │ │ ├── HYPRE_parcsr_vector.c │ │ ├── Makefile │ │ ├── _hypre_parcsr_mv.h │ │ ├── communicationT.c │ │ ├── driver.c │ │ ├── driver_aat.c │ │ ├── driver_boolaat.c │ │ ├── driver_boolmatmul.c │ │ ├── driver_mat_multivec.c │ │ ├── driver_matmul.c │ │ ├── driver_matvec.c │ │ ├── driver_multivec.c │ │ ├── gen_fffc.c │ │ ├── headers │ │ ├── new_commpkg.c │ │ ├── new_commpkg.h │ │ ├── numbers.c │ │ ├── numbers.h │ │ ├── par_chord_matrix.h │ │ ├── par_csr_aat.c │ │ ├── par_csr_assumed_part.c │ │ ├── par_csr_assumed_part.h │ │ ├── par_csr_bool_matop.c │ │ ├── par_csr_bool_matrix.c │ │ ├── par_csr_communication.c │ │ ├── par_csr_communication.h │ │ ├── par_csr_fffc_device.c │ │ ├── par_csr_matop.c │ │ ├── par_csr_matop_device.c │ │ ├── par_csr_matop_marked.c │ │ ├── par_csr_matrix.c │ │ ├── par_csr_matrix.h │ │ ├── par_csr_matvec.c │ │ ├── par_csr_triplemat.c │ │ ├── par_csr_triplemat_device.c │ │ ├── par_make_system.c │ │ ├── par_make_system.h │ │ ├── par_vector.c │ │ ├── par_vector.h │ │ ├── parchord_to_parcsr.c │ │ └── protos.h │ │ ├── seq_mv │ │ ├── CMakeLists.txt │ │ ├── HYPRE_csr_matrix.c │ │ ├── HYPRE_mapped_matrix.c │ │ ├── HYPRE_multiblock_matrix.c │ │ ├── HYPRE_seq_mv.h │ │ ├── HYPRE_vector.c │ │ ├── MakeIRIX │ │ ├── Makefile │ │ ├── csr_matop.c │ │ ├── csr_matop_device.c │ │ ├── csr_matrix.c │ │ ├── csr_matrix.h │ │ ├── csr_matvec.c │ │ ├── csr_matvec_device.c │ │ ├── csr_matvec_oomp.c │ │ ├── csr_spadd_device.c │ │ ├── csr_spgemm_device.c │ │ ├── csr_spgemm_device.h │ │ ├── csr_spgemm_device_attempt.c │ │ ├── csr_spgemm_device_confident.c │ │ ├── csr_spgemm_device_cusparse.c │ │ ├── csr_spgemm_device_rowbound.c │ │ ├── csr_spgemm_device_rowest.c │ │ ├── csr_spgemm_device_util.c │ │ ├── csr_sptrans_device.c │ │ ├── genpart.c │ │ ├── headers │ │ ├── mapped_matrix.c │ │ ├── mapped_matrix.h │ │ ├── multiblock_matrix.c │ │ ├── multiblock_matrix.h │ │ ├── protos.h │ │ ├── seq_mv.h │ │ ├── vector.c │ │ ├── vector.h │ │ └── vector_batched.c │ │ ├── sstruct_ls │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_sstruct_InterFAC.c │ │ ├── F90_HYPRE_sstruct_bicgstab.c │ │ ├── F90_HYPRE_sstruct_flexgmres.c │ │ ├── F90_HYPRE_sstruct_gmres.c │ │ ├── F90_HYPRE_sstruct_int.c │ │ ├── F90_HYPRE_sstruct_lgmres.c │ │ ├── F90_HYPRE_sstruct_maxwell.c │ │ ├── F90_HYPRE_sstruct_pcg.c │ │ ├── F90_HYPRE_sstruct_split.c │ │ ├── F90_HYPRE_sstruct_sys_pfmg.c │ │ ├── HYPRE_sstruct_InterFAC.c │ │ ├── HYPRE_sstruct_bicgstab.c │ │ ├── HYPRE_sstruct_flexgmres.c │ │ ├── HYPRE_sstruct_gmres.c │ │ ├── HYPRE_sstruct_int.c │ │ ├── HYPRE_sstruct_lgmres.c │ │ ├── HYPRE_sstruct_ls.h │ │ ├── HYPRE_sstruct_maxwell.c │ │ ├── HYPRE_sstruct_pcg.c │ │ ├── HYPRE_sstruct_split.c │ │ ├── HYPRE_sstruct_sys_pfmg.c │ │ ├── Makefile │ │ ├── _hypre_sstruct_ls.h │ │ ├── eliminate_rowscols.c │ │ ├── eliminate_rowscols.h │ │ ├── fac.c │ │ ├── fac.h │ │ ├── fac_CFInterfaceExtents.c │ │ ├── fac_amr_fcoarsen.c │ │ ├── fac_amr_rap.c │ │ ├── fac_amr_zero_data.c │ │ ├── fac_cf_coarsen.c │ │ ├── fac_cfstencil_box.c │ │ ├── fac_interp2.c │ │ ├── fac_relax.c │ │ ├── fac_restrict2.c │ │ ├── fac_setup2.c │ │ ├── fac_solve3.c │ │ ├── fac_zero_cdata.c │ │ ├── fac_zero_stencilcoef.c │ │ ├── gselim.h │ │ ├── headers │ │ ├── hypre_MaxwellSolve.c │ │ ├── hypre_MaxwellSolve2.c │ │ ├── hypre_bsearch.c │ │ ├── krylov.c │ │ ├── krylov_sstruct.c │ │ ├── maxwell_PNedelec.c │ │ ├── maxwell_PNedelec_bdy.c │ │ ├── maxwell_PTopology.h │ │ ├── maxwell_TV.c │ │ ├── maxwell_TV.h │ │ ├── maxwell_TV_setup.c │ │ ├── maxwell_grad.c │ │ ├── maxwell_physbdy.c │ │ ├── maxwell_semi_interp.c │ │ ├── maxwell_zeroBC.c │ │ ├── nd1_amge_interpolation.c │ │ ├── nd1_amge_interpolation.h │ │ ├── node_relax.c │ │ ├── sstruct_amr_intercommunication.c │ │ ├── sstruct_owninfo.c │ │ ├── sstruct_owninfo.h │ │ ├── sstruct_recvinfo.c │ │ ├── sstruct_recvinfo.h │ │ ├── sstruct_sendinfo.c │ │ ├── sstruct_sendinfo.h │ │ ├── sstruct_sharedDOFComm.c │ │ ├── sstruct_sharedDOFComm.h │ │ ├── sys_pfmg.c │ │ ├── sys_pfmg.h │ │ ├── sys_pfmg_relax.c │ │ ├── sys_pfmg_setup.c │ │ ├── sys_pfmg_setup_interp.c │ │ ├── sys_pfmg_setup_rap.c │ │ ├── sys_pfmg_solve.c │ │ ├── sys_semi_interp.c │ │ └── sys_semi_restrict.c │ │ ├── sstruct_mv │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_sstruct_graph.c │ │ ├── F90_HYPRE_sstruct_grid.c │ │ ├── F90_HYPRE_sstruct_matrix.c │ │ ├── F90_HYPRE_sstruct_stencil.c │ │ ├── F90_HYPRE_sstruct_vector.c │ │ ├── HYPRE_sstruct_graph.c │ │ ├── HYPRE_sstruct_grid.c │ │ ├── HYPRE_sstruct_matrix.c │ │ ├── HYPRE_sstruct_mv.h │ │ ├── HYPRE_sstruct_stencil.c │ │ ├── HYPRE_sstruct_vector.c │ │ ├── Makefile │ │ ├── _hypre_sstruct_mv.h │ │ ├── headers │ │ ├── protos.h │ │ ├── sstruct_axpy.c │ │ ├── sstruct_copy.c │ │ ├── sstruct_graph.c │ │ ├── sstruct_graph.h │ │ ├── sstruct_grid.c │ │ ├── sstruct_grid.h │ │ ├── sstruct_innerprod.c │ │ ├── sstruct_matrix.c │ │ ├── sstruct_matrix.h │ │ ├── sstruct_matvec.c │ │ ├── sstruct_scale.c │ │ ├── sstruct_stencil.c │ │ ├── sstruct_stencil.h │ │ ├── sstruct_vector.c │ │ └── sstruct_vector.h │ │ ├── struct_ls │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_struct_bicgstab.c │ │ ├── F90_HYPRE_struct_cycred.c │ │ ├── F90_HYPRE_struct_flexgmres.c │ │ ├── F90_HYPRE_struct_gmres.c │ │ ├── F90_HYPRE_struct_hybrid.c │ │ ├── F90_HYPRE_struct_int.c │ │ ├── F90_HYPRE_struct_jacobi.c │ │ ├── F90_HYPRE_struct_lgmres.c │ │ ├── F90_HYPRE_struct_pcg.c │ │ ├── F90_HYPRE_struct_pfmg.c │ │ ├── F90_HYPRE_struct_smg.c │ │ ├── F90_HYPRE_struct_sparse_msg.c │ │ ├── HYPRE_struct_bicgstab.c │ │ ├── HYPRE_struct_cycred.c │ │ ├── HYPRE_struct_flexgmres.c │ │ ├── HYPRE_struct_gmres.c │ │ ├── HYPRE_struct_hybrid.c │ │ ├── HYPRE_struct_int.c │ │ ├── HYPRE_struct_jacobi.c │ │ ├── HYPRE_struct_lgmres.c │ │ ├── HYPRE_struct_ls.h │ │ ├── HYPRE_struct_pcg.c │ │ ├── HYPRE_struct_pfmg.c │ │ ├── HYPRE_struct_smg.c │ │ ├── HYPRE_struct_sparse_msg.c │ │ ├── Makefile │ │ ├── _hypre_struct_ls.h │ │ ├── coarsen.c │ │ ├── cyclic_reduction.c │ │ ├── general.c │ │ ├── headers │ │ ├── hybrid.c │ │ ├── jacobi.c │ │ ├── pcg_struct.c │ │ ├── pfmg.c │ │ ├── pfmg.h │ │ ├── pfmg2_setup_rap.c │ │ ├── pfmg3_setup_rap.c │ │ ├── pfmg_relax.c │ │ ├── pfmg_setup.c │ │ ├── pfmg_setup_interp.c │ │ ├── pfmg_setup_rap.c │ │ ├── pfmg_setup_rap5.c │ │ ├── pfmg_setup_rap7.c │ │ ├── pfmg_solve.c │ │ ├── point_relax.c │ │ ├── red_black_constantcoef_gs.c │ │ ├── red_black_gs.c │ │ ├── red_black_gs.h │ │ ├── semi.c │ │ ├── semi_interp.c │ │ ├── semi_restrict.c │ │ ├── semi_setup_rap.c │ │ ├── smg.c │ │ ├── smg.h │ │ ├── smg2_setup_rap.c │ │ ├── smg3_setup_rap.c │ │ ├── smg_axpy.c │ │ ├── smg_relax.c │ │ ├── smg_residual.c │ │ ├── smg_residual_unrolled.c │ │ ├── smg_setup.c │ │ ├── smg_setup_interp.c │ │ ├── smg_setup_rap.c │ │ ├── smg_setup_restrict.c │ │ ├── smg_solve.c │ │ ├── sparse_msg.c │ │ ├── sparse_msg.h │ │ ├── sparse_msg2_setup_rap.c │ │ ├── sparse_msg3_setup_rap.c │ │ ├── sparse_msg_filter.c │ │ ├── sparse_msg_interp.c │ │ ├── sparse_msg_restrict.c │ │ ├── sparse_msg_setup.c │ │ ├── sparse_msg_setup_rap.c │ │ └── sparse_msg_solve.c │ │ ├── struct_mv │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_struct_grid.c │ │ ├── F90_HYPRE_struct_matrix.c │ │ ├── F90_HYPRE_struct_stencil.c │ │ ├── F90_HYPRE_struct_vector.c │ │ ├── HYPRE_struct_grid.c │ │ ├── HYPRE_struct_matrix.c │ │ ├── HYPRE_struct_mv.h │ │ ├── HYPRE_struct_stencil.c │ │ ├── HYPRE_struct_vector.c │ │ ├── Makefile │ │ ├── _hypre_struct_mv.h │ │ ├── _hypre_struct_mv.hpp │ │ ├── assumed_part.c │ │ ├── assumed_part.h │ │ ├── box.c │ │ ├── box.h │ │ ├── box_algebra.c │ │ ├── box_boundary.c │ │ ├── box_manager.c │ │ ├── box_manager.h │ │ ├── boxloop_cuda.h │ │ ├── boxloop_host.h │ │ ├── boxloop_kokkos.h │ │ ├── boxloop_omp_device.h │ │ ├── boxloop_raja.h │ │ ├── communication_info.c │ │ ├── computation.c │ │ ├── computation.h │ │ ├── headers │ │ ├── project.c │ │ ├── protos.h │ │ ├── struct_axpy.c │ │ ├── struct_communication.c │ │ ├── struct_communication.h │ │ ├── struct_copy.c │ │ ├── struct_grid.c │ │ ├── struct_grid.h │ │ ├── struct_innerprod.c │ │ ├── struct_io.c │ │ ├── struct_matrix.c │ │ ├── struct_matrix.h │ │ ├── struct_matrix_mask.c │ │ ├── struct_matvec.c │ │ ├── struct_scale.c │ │ ├── struct_stencil.c │ │ ├── struct_stencil.h │ │ ├── struct_vector.c │ │ └── struct_vector.h │ │ ├── tarch │ │ └── utilities │ │ ├── CMakeLists.txt │ │ ├── F90_HYPRE_error.c │ │ ├── F90_HYPRE_general.c │ │ ├── HYPRE_error_f.h │ │ ├── HYPRE_utilities.h │ │ ├── HYPRE_version.c │ │ ├── Makefile │ │ ├── _hypre_utilities.h │ │ ├── _hypre_utilities.hpp │ │ ├── amg_linklist.c │ │ ├── amg_linklist.h │ │ ├── binsearch.c │ │ ├── caliper_instrumentation.h │ │ ├── exchange_data.README │ │ ├── exchange_data.c │ │ ├── exchange_data.h │ │ ├── fortran.h │ │ ├── fortran_matrix.c │ │ ├── fortran_matrix.h │ │ ├── headers │ │ ├── hypre_ap.c │ │ ├── hypre_complex.c │ │ ├── hypre_cub_allocator.h │ │ ├── hypre_cuda_reducer.h │ │ ├── hypre_cuda_utils.c │ │ ├── hypre_cuda_utils.h │ │ ├── hypre_error.c │ │ ├── hypre_error.h │ │ ├── hypre_general.c │ │ ├── hypre_general.h │ │ ├── hypre_handle.h │ │ ├── hypre_hopscotch_hash.c │ │ ├── hypre_hopscotch_hash.h │ │ ├── hypre_memory.c │ │ ├── hypre_memory.h │ │ ├── hypre_merge_sort.c │ │ ├── hypre_mpi_comm_f2c.c │ │ ├── hypre_nvtx.c │ │ ├── hypre_omp_device.c │ │ ├── hypre_omp_device.h │ │ ├── hypre_prefix_sum.c │ │ ├── hypre_printf.c │ │ ├── hypre_printf.h │ │ ├── hypre_qsort.c │ │ ├── hypre_smp.h │ │ ├── memory_dmalloc.c │ │ ├── mpistubs.c │ │ ├── mpistubs.h │ │ ├── protos │ │ ├── protos.h │ │ ├── qsplit.c │ │ ├── random.c │ │ ├── thread_protos.awk │ │ ├── thread_wrappers.awk │ │ ├── threading.c │ │ ├── threading.h │ │ ├── timer.c │ │ ├── timing.c │ │ ├── timing.h │ │ └── version ├── libtiff │ ├── CMakeLists.txt │ ├── COMMITTERS │ ├── COPYRIGHT │ ├── ChangeLog │ ├── HOWTO-RELEASE │ ├── HOWTO-SECURITY-RELEASE │ ├── Makefile.am │ ├── Makefile.vc │ ├── README.md │ ├── RELEASE-DATE │ ├── SConstruct │ ├── TODO │ ├── VERSION │ ├── autogen.sh │ ├── configure.ac │ ├── configure.com │ ├── libtiff-4.pc.in │ ├── libtiff │ │ ├── CMakeLists.txt │ │ ├── Makefile.am │ │ ├── Makefile.lcc │ │ ├── Makefile.vc │ │ ├── SConstruct │ │ ├── libtiff.def │ │ ├── libtiff.map │ │ ├── libtiffxx.map │ │ ├── mkg3states.c │ │ ├── mkspans.c │ │ ├── t4.h │ │ ├── tif_aux.c │ │ ├── tif_close.c │ │ ├── tif_codec.c │ │ ├── tif_color.c │ │ ├── tif_compress.c │ │ ├── tif_config.h-vms │ │ ├── tif_config.h.cmake.in │ │ ├── tif_config.vc.h │ │ ├── tif_config.wince.h │ │ ├── tif_dir.c │ │ ├── tif_dir.h │ │ ├── tif_dirinfo.c │ │ ├── tif_dirread.c │ │ ├── tif_dirwrite.c │ │ ├── tif_dumpmode.c │ │ ├── tif_error.c │ │ ├── tif_extension.c │ │ ├── tif_fax3.c │ │ ├── tif_fax3.h │ │ ├── tif_fax3sm.c │ │ ├── tif_flush.c │ │ ├── tif_getimage.c │ │ ├── tif_jbig.c │ │ ├── tif_jpeg.c │ │ ├── tif_jpeg_12.c │ │ ├── tif_luv.c │ │ ├── tif_lzma.c │ │ ├── tif_lzw.c │ │ ├── tif_next.c │ │ ├── tif_ojpeg.c │ │ ├── tif_open.c │ │ ├── tif_packbits.c │ │ ├── tif_pixarlog.c │ │ ├── tif_predict.c │ │ ├── tif_predict.h │ │ ├── tif_print.c │ │ ├── tif_read.c │ │ ├── tif_stream.cxx │ │ ├── tif_strip.c │ │ ├── tif_swab.c │ │ ├── tif_thunder.c │ │ ├── tif_tile.c │ │ ├── tif_unix.c │ │ ├── tif_version.c │ │ ├── tif_vms.c │ │ ├── tif_warning.c │ │ ├── tif_webp.c │ │ ├── tif_win32.c │ │ ├── tif_wince.c │ │ ├── tif_write.c │ │ ├── tif_zip.c │ │ ├── tif_zstd.c │ │ ├── tiff.h │ │ ├── tiffconf.h-vms │ │ ├── tiffconf.h.cmake.in │ │ ├── tiffconf.h.in │ │ ├── tiffconf.vc.h │ │ ├── tiffconf.wince.h │ │ ├── tiffio.h │ │ ├── tiffio.hxx │ │ ├── tiffiop.h │ │ ├── tiffvers.h │ │ ├── tiffvers.h.in │ │ └── uvcode.h │ ├── nmake.opt │ └── tiff.spec └── zlib │ ├── .gitignore │ ├── CMakeLists.txt │ ├── INDEX │ ├── Makefile │ ├── Makefile.in │ ├── README │ ├── README.md │ ├── adler32.c │ ├── compress.c │ ├── contrib │ └── iostream3 │ │ ├── README │ │ ├── TODO │ │ ├── test.cc │ │ └── zfstream.h │ ├── crc32.c │ ├── crc32.h │ ├── deflate.c │ ├── deflate.h │ ├── gzclose.c │ ├── gzguts.h │ ├── gzlib.c │ ├── gzread.c │ ├── gzwrite.c │ ├── infback.c │ ├── inffast.c │ ├── inffast.h │ ├── inffixed.h │ ├── inflate.c │ ├── inflate.h │ ├── inftrees.c │ ├── inftrees.h │ ├── treebuild.xml │ ├── trees.c │ ├── trees.h │ ├── uncompr.c │ ├── win32 │ ├── DLL_FAQ.txt │ ├── Makefile.bor │ ├── Makefile.gcc │ ├── Makefile.msc │ ├── README-WIN32.txt │ ├── VisualC.txt │ ├── zlib.def │ └── zlib1.rc │ ├── zconf.h.cmakein │ ├── zconf.h.in │ ├── zlib.3 │ ├── zlib.h │ ├── zlib.map │ ├── zlib.pc.cmakein │ ├── zlib.pc.in │ ├── zlib2ansi │ ├── zutil.c │ └── zutil.h └── src ├── Makefile ├── include ├── InputFile.h ├── README.md ├── globals.h ├── profilers.h └── typses.h ├── libvoxel ├── Makefile ├── README.md ├── shapeToVoxel.h ├── test.py ├── voxelEndian.h ├── voxelImage.cpp ├── voxelImage.h ├── voxelImageI.h ├── voxelImageProcess.cpp ├── voxelRegions.h └── voxelTiff.h ├── pnm ├── Makefile ├── README.md ├── pnextract │ ├── ElementGNE.h │ ├── Makefile │ ├── README.md │ ├── blockNet.cpp │ ├── blockNet.h │ ├── blockNet_vxlManip.cpp │ ├── blockNet_write_cnm.cpp │ ├── inputData.h │ ├── medialRadius.cpp │ ├── medialSurf.cpp │ ├── medialSurf.h │ ├── nextract.cpp │ ├── test.py │ ├── writers.h │ ├── writers_vtk.cpp │ └── writers_vxl.cpp └── pnflow │ ├── ChangeLog │ ├── CommonData.h │ ├── Element.cpp │ ├── Element.h │ ├── ElementConstSolver.cpp │ ├── ElementPore.cpp │ ├── ElementThroat.cpp │ ├── FlowData.cpp │ ├── FlowData.h │ ├── FlowDomain.cpp │ ├── FlowDomain.h │ ├── FlowDomain_drain.cpp │ ├── FlowDomain_imbibe.cpp │ ├── InOutCNM.cpp │ ├── Makefile │ ├── 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