└── README.md


/README.md:
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 1 | # Logan Search
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 3 | [`Logan Search`](https://logan-search.org) is a k-mer search engine for all Sequence Read Archive public accessions. Given a DNA sequence, the service replies in a few minutes in which SRA accession(s) it is likely to occur. The service also enables to recover metadata associated to target accessions, and to perform some visualizations.
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 5 | In more technical depth, the search engine uses [kmindex](https://tlemane.github.io/kmindex), a k-mer based sequence search tool that uses Bloom filters. It was applied to construct an index over all genome assemblies of all of SRA, more specifically over the unitigs of [Logan](https://github.com/IndexThePlanet/Logan). The website is running the [kmviz](https://tlemane.github.io/kmviz) visualization tool.
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 7 | **This repository is used as a discussion place for questions/issues from `Logan Search` users**.
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 9 | ## Submit an issue
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11 | ⚠️ If you submit an issue related to a query you already run on `Logan Search`, please provide your `session-id`, *e.g* `kmviz-6e038ec6-a26d-4710-bcda-d2c31cdae4e0` (the first 8 characters are enough if you do not want to share it publicly, *e.g.* `kmviz-6e038ec6`). 
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