├── .github
├── CODEOWNERS.txt
├── ISSUE_TEMPLATE.md
├── workflows
│ ├── test-coverage.yaml
│ ├── pkgdown.yaml
│ └── check-full.yaml
├── SUPPORT.md
├── CONTRIBUTING.md
└── CODE_OF_CONDUCT.md
├── man
├── figures
│ └── logo.png
├── reexports.Rd
├── glance.Rd
├── augment.Rd
├── tidy.Rd
├── grouped_glance.Rd
├── glance_performance.Rd
├── grouped_augment.Rd
├── grouped_tidy.Rd
└── tidy_parameters.Rd
├── .lintr
├── tests
├── testthat.R
└── testthat
│ ├── test-hybrid_generics.R
│ ├── test-generics.R
│ ├── _snaps
│ ├── hybrid_generics.md
│ └── grouped_generics.md
│ └── test-grouped_generics.R
├── hextools
├── broomExtra-hexagon_Indrajeet-Patil.png
├── broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm.ai
├── broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm.pdf
└── broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm-cmyk_PRINT.pdf
├── .gitattributes
├── inst
└── WORDLIST
├── codecov.yaml
├── R
├── reexports.R
├── generics.R
├── hybrid_easystats.R
└── grouped_generics.R
├── broomExtra.Rproj
├── NAMESPACE
├── .Rbuildignore
├── .gitignore
├── pkgdown
└── _pkgdown.yml
├── DESCRIPTION
├── NEWS.md
├── README.md
├── README.Rmd
├── LICENSE.md
└── LICENSE
/.github/CODEOWNERS.txt:
--------------------------------------------------------------------------------
1 | # CODEOWNERS for broomExtra
2 | .github/CODEOWNERS @IndrajeetPatil
3 |
--------------------------------------------------------------------------------
/man/figures/logo.png:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/IndrajeetPatil/broomExtra/HEAD/man/figures/logo.png
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/.lintr:
--------------------------------------------------------------------------------
1 | linters: with_defaults(object_name_linter=NULL,line_length_linter(100),trailing_whitespace_linter=NULL)
2 |
--------------------------------------------------------------------------------
/tests/testthat.R:
--------------------------------------------------------------------------------
1 | library(testthat)
2 | library(broomExtra)
3 | library(dplyr)
4 |
5 | test_check("broomExtra")
6 |
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/hextools/broomExtra-hexagon_Indrajeet-Patil.png:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/IndrajeetPatil/broomExtra/HEAD/hextools/broomExtra-hexagon_Indrajeet-Patil.png
--------------------------------------------------------------------------------
/hextools/broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm.ai:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/IndrajeetPatil/broomExtra/HEAD/hextools/broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm.ai
--------------------------------------------------------------------------------
/hextools/broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm.pdf:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/IndrajeetPatil/broomExtra/HEAD/hextools/broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm.pdf
--------------------------------------------------------------------------------
/.gitattributes:
--------------------------------------------------------------------------------
1 | docs/* linguist-documentation
2 | man/* linguist-documentation
3 | misc/* linguist-documentation
4 | pkgdown/* linguist-documentation
5 | *.html linguist-documentation
6 |
--------------------------------------------------------------------------------
/hextools/broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm-cmyk_PRINT.pdf:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/IndrajeetPatil/broomExtra/HEAD/hextools/broomExtra-hexagon_Indrajeet-Patil_5-08_4-39cm-cmyk_PRINT.pdf
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/inst/WORDLIST:
--------------------------------------------------------------------------------
1 | CRAN's
2 | Lifecycle
3 | Nagelkerke's
4 | Otterstetter
5 | Tjur's
6 | easystats
7 | hexsticker
8 | instantiations
9 | lifecycle
10 | misspecified
11 | pkgdown
12 | tibble
13 | tibbles
14 | tidiers
15 |
--------------------------------------------------------------------------------
/codecov.yaml:
--------------------------------------------------------------------------------
1 | coverage:
2 | status:
3 | project:
4 | default:
5 | target: auto
6 | threshold: 1%
7 | informational: true
8 | patch:
9 | default:
10 | target: auto
11 | threshold: 1%
12 | informational: true
13 |
--------------------------------------------------------------------------------
/R/reexports.R:
--------------------------------------------------------------------------------
1 | # tidyverse -------------------------------------
2 |
3 | #' @export
4 | #' @importFrom magrittr "%>%"
5 | magrittr::`%>%`
6 |
7 | #' @export
8 | #' @importFrom magrittr "%<>%"
9 | magrittr::`%<>%`
10 |
11 | #' @export
12 | #' @importFrom dplyr tibble
13 | dplyr::tibble
14 |
15 | #' @export
16 | #' @importFrom dplyr as_tibble
17 | dplyr::as_tibble
18 |
--------------------------------------------------------------------------------
/.github/ISSUE_TEMPLATE.md:
--------------------------------------------------------------------------------
1 | Please briefly describe your problem and what output you expect. If you have a question, please don't use this form. Instead, ask on or .
2 |
3 | Please include a minimal reproducible example (AKA a reprex). If you've never heard of a [reprex](https://reprex.tidyverse.org/) before, start by reading .
4 |
5 | ---
6 |
7 | Brief description of the problem
8 |
9 | ```r
10 | # insert reprex here
11 | ```
12 |
--------------------------------------------------------------------------------
/broomExtra.Rproj:
--------------------------------------------------------------------------------
1 | Version: 1.0
2 |
3 | RestoreWorkspace: No
4 | SaveWorkspace: No
5 | AlwaysSaveHistory: No
6 |
7 | EnableCodeIndexing: Yes
8 | UseSpacesForTab: Yes
9 | NumSpacesForTab: 2
10 | Encoding: UTF-8
11 |
12 | RnwWeave: Sweave
13 | LaTeX: pdfLaTeX
14 |
15 | StripTrailingWhitespace: Yes
16 |
17 | BuildType: Package
18 | PackageUseDevtools: Yes
19 | PackageInstallArgs: --no-multiarch --with-keep.source
20 | PackageRoxygenize: rd,collate,namespace
21 |
22 | QuitChildProcessesOnExit: Yes
23 | DisableExecuteRprofile: Yes
24 |
--------------------------------------------------------------------------------
/NAMESPACE:
--------------------------------------------------------------------------------
1 | # Generated by roxygen2: do not edit by hand
2 |
3 | export("%<>%")
4 | export("%>%")
5 | export(as_tibble)
6 | export(augment)
7 | export(glance)
8 | export(glance_performance)
9 | export(grouped_augment)
10 | export(grouped_glance)
11 | export(grouped_tidy)
12 | export(tibble)
13 | export(tidy)
14 | export(tidy_parameters)
15 | import(dplyr)
16 | import(parameters)
17 | import(performance)
18 | import(rlang)
19 | importFrom(dplyr,as_tibble)
20 | importFrom(dplyr,tibble)
21 | importFrom(magrittr,"%<>%")
22 | importFrom(magrittr,"%>%")
23 |
--------------------------------------------------------------------------------
/man/reexports.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/reexports.R
3 | \docType{import}
4 | \name{reexports}
5 | \alias{reexports}
6 | \alias{\%>\%}
7 | \alias{\%<>\%}
8 | \alias{tibble}
9 | \alias{as_tibble}
10 | \title{Objects exported from other packages}
11 | \keyword{internal}
12 | \description{
13 | These objects are imported from other packages. Follow the links
14 | below to see their documentation.
15 |
16 | \describe{
17 | \item{dplyr}{\code{\link[dplyr:reexports]{as_tibble}}, \code{\link[dplyr:reexports]{tibble}}}
18 |
19 | \item{magrittr}{\code{\link[magrittr:compound]{\%<>\%}}, \code{\link[magrittr:pipe]{\%>\%}}}
20 | }}
21 |
22 |
--------------------------------------------------------------------------------
/.github/workflows/test-coverage.yaml:
--------------------------------------------------------------------------------
1 | # Workflow derived from https://github.com/r-lib/actions/tree/master/examples
2 | # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
3 | on:
4 | push:
5 | branches: [main, master]
6 | pull_request:
7 | branches: [main, master]
8 |
9 | name: test-coverage
10 |
11 | jobs:
12 | test-coverage:
13 | runs-on: ubuntu-latest
14 | env:
15 | GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
16 |
17 | steps:
18 | - uses: actions/checkout@v2
19 |
20 | - uses: r-lib/actions/setup-r@master
21 | with:
22 | use-public-rspm: true
23 |
24 | - uses: r-lib/actions/setup-r-dependencies@master
25 | with:
26 | extra-packages: covr
27 |
28 | - name: Test coverage
29 | run: covr::codecov()
30 | shell: Rscript {0}
31 |
--------------------------------------------------------------------------------
/.Rbuildignore:
--------------------------------------------------------------------------------
1 | ^\cache$
2 | ^codemeta\.json$
3 | ^Meta$
4 | ^doc$
5 | ^.*\.Rproj$
6 | ^\.Rproj\.user$
7 | ^README\.Rmd$
8 | ^Rplots.pdf$
9 | ^README-.*\.png$
10 | ^CONDUCT\.md$
11 | ^SECURITY\.md$
12 | ^cran-comments\.md$
13 | ^CODE_OF_CONDUCT\.md$
14 | ^SUPPORT\.md$
15 | ^\.github$
16 | ^NEWS$
17 | ^docs$
18 | ^revdep$
19 | publication/*
20 | ^codecov\.yml$
21 | ^\.coveralls\.yml$
22 | ^\.travis\.yml$
23 | ^_pkgdown\.yml$
24 | ^appveyor\.yml$
25 | ^.gitlab-ci\.yml$
26 | ^data-raw$
27 | ^pkgdown$
28 | ^\.httr-oauth$
29 | ^CRAN-RELEASE$
30 | tests\^spelling
31 | ^LICENSE\.md$
32 | ^\.lintr$
33 | ^\.circleci$
34 | ^tests/manual$
35 | ^revdep$
36 | ^\.covrignore$
37 | ^\.github/ISSUE_TEMPLATE$
38 | ^paper.*$
39 | references.bib
40 | ^API$
41 | ^\.pre-commit-config\.yaml$
42 | ^\.github/workflows/R\.yaml$
43 | ^\.github/workflows/pr-commands\.yaml$
44 | hextools
45 | ^WIP/.
46 | ^CRAN-SUBMISSION$
47 |
--------------------------------------------------------------------------------
/man/glance.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/generics.R
3 | \name{glance}
4 | \alias{glance}
5 | \title{Retrieve model summary dataframe if it exists.}
6 | \usage{
7 | glance(x, ...)
8 | }
9 | \arguments{
10 | \item{x}{model or other R object to convert to single-row data frame}
11 |
12 | \item{...}{other arguments passed to methods}
13 | }
14 | \description{
15 | Checks if a \code{glance} method exits for a given object, either in \code{{broom}} or in
16 | \code{{broom.mixed}}. If it does, return the model summary dataframe, if not, return
17 | a \code{NULL}. In this case, you can try the \code{\link[=glance_performance]{glance_performance()}}
18 | function.
19 | }
20 | \examples{
21 | set.seed(123)
22 | lm.mod <- lm(Sepal.Length ~ Species, iris)
23 | broomExtra::glance(lm.mod)
24 | }
25 | \seealso{
26 | \code{\link{grouped_glance}}, \code{\link{glance_performance}}
27 | }
28 |
--------------------------------------------------------------------------------
/man/augment.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/generics.R
3 | \name{augment}
4 | \alias{augment}
5 | \title{Retrieve augmented dataframe if it exists.}
6 | \usage{
7 | augment(x, ...)
8 | }
9 | \arguments{
10 | \item{x}{Model object or other R object with information to append to
11 | observations.}
12 |
13 | \item{...}{Addition arguments to \code{augment} method.}
14 | }
15 | \value{
16 | A \code{\link[tibble:tibble]{tibble::tibble()}} with information about data points.
17 | }
18 | \description{
19 | Checks if a \code{augment} method exits for a given object, either in \code{{broom}} or
20 | in \code{{broom.mixed}}. If it does, return the model summary dataframe, if not,
21 | return a \code{NULL}.
22 | }
23 | \examples{
24 | set.seed(123)
25 | lm.mod <- lm(Sepal.Length ~ Species, iris)
26 | broomExtra::augment(lm.mod)
27 | }
28 | \seealso{
29 | \code{\link{grouped_augment}}
30 | }
31 |
--------------------------------------------------------------------------------
/.gitignore:
--------------------------------------------------------------------------------
1 | Meta
2 | doc
3 | # Windows image file caches
4 | Thumbs.db
5 | ehthumbs.db
6 |
7 | # Folder config file
8 | Desktop.ini
9 | # Recycle Bin used on file shares
10 | $RECYCLE.BIN/
11 | # Windows Installer files
12 | *.cab
13 | *.msi
14 | *.msm
15 | *.msp
16 | # Windows shortcuts
17 | *.lnk
18 | # =========================
19 | # Operating System Files
20 | # OSX
21 | .DS_Store
22 | .AppleDouble
23 | .LSOverride
24 | # Thumbnails
25 | ._*
26 | # Files that might appear in the root of a volume
27 | .DocumentRevisions-V100
28 | .fseventsd
29 | .Spotlight-V100
30 | .TemporaryItems
31 | .Trashes
32 | .VolumeIcon.icns
33 | # Directories potentially created on remote AFP share
34 | .AppleDB
35 | .AppleDesktop
36 | Network Trash Folder
37 | Temporary Items
38 | .apdisk
39 | # R Studio files
40 | .Rproj.user
41 | .Rhistory
42 | .RData
43 | .Ruserdata
44 | inst/doc
45 | .httr-oauth
46 | revdep/checks
47 | revdep/library
48 | revdep/checks.noindex
49 | revdep/library.noindex
50 | revdep/data.sqlite
51 | /doc/
52 | /Meta/
53 | CRAN-SUBMISSION
54 |
--------------------------------------------------------------------------------
/man/tidy.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/generics.R
3 | \name{tidy}
4 | \alias{tidy}
5 | \title{Retrieve tidy dataframe if it exists}
6 | \usage{
7 | tidy(x, ...)
8 | }
9 | \arguments{
10 | \item{x}{An object to be converted into a tidy \code{\link[tibble:tibble]{tibble::tibble()}}.}
11 |
12 | \item{...}{Additional arguments to tidying method.}
13 | }
14 | \value{
15 | A \code{\link[tibble:tibble]{tibble::tibble()}} with information about model components.
16 | }
17 | \description{
18 | Checks if a \code{tidy} method exits for a given object, either in \code{{broom}} or in
19 | \code{{broom.mixed}}. If it does, it turn an object into a tidy tibble, if not,
20 | return a \code{NULL}. In this case, you can try the
21 | \code{\link[=tidy_parameters]{tidy_parameters()}} function.
22 | }
23 | \examples{
24 | set.seed(123)
25 | lm.mod <- lm(Sepal.Length ~ Species, iris)
26 | broomExtra::tidy(x = lm.mod, conf.int = TRUE)
27 | }
28 | \seealso{
29 | \code{\link{grouped_tidy}}, \code{\link{tidy_parameters}}
30 | }
31 |
--------------------------------------------------------------------------------
/man/grouped_glance.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/grouped_generics.R
3 | \name{grouped_glance}
4 | \alias{grouped_glance}
5 | \title{Grouped model summary}
6 | \usage{
7 | grouped_glance(data, grouping.vars, ..f, ...)
8 | }
9 | \arguments{
10 | \item{data}{Dataframe (or tibble) from which variables are to be taken.}
11 |
12 | \item{grouping.vars}{Grouping variables.}
13 |
14 | \item{..f}{A function, or function name as a string.}
15 |
16 | \item{...}{<\link[rlang:dyn-dots]{dynamic}> Arguments for \code{.fn}.}
17 | }
18 | \description{
19 | Model summary output from grouped analysis of any function that
20 | has \code{data} argument in its function call.
21 | }
22 | \examples{
23 | set.seed(123)
24 | library(dplyr)
25 |
26 | # linear mixed effects model
27 | grouped_glance(
28 | data = mutate(MASS::Aids2, interval = death - diag),
29 | grouping.vars = sex,
30 | ..f = lme4::lmer,
31 | formula = interval ~ age + (1 | status),
32 | control = lme4::lmerControl(optimizer = "bobyqa")
33 | )
34 | }
35 | \seealso{
36 | \code{\link{glance}}
37 | }
38 |
--------------------------------------------------------------------------------
/man/glance_performance.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/hybrid_easystats.R
3 | \name{glance_performance}
4 | \alias{glance_performance}
5 | \title{Model performance summary dataframes using \code{{broom}} and \code{{easystats}}}
6 | \usage{
7 | glance_performance(x, ...)
8 | }
9 | \arguments{
10 | \item{x}{model or other R object to convert to single-row data frame}
11 |
12 | \item{...}{other arguments passed to methods}
13 | }
14 | \value{
15 | A data frame (with one row) and one column per "index".
16 | }
17 | \description{
18 | Computes indices of model performance for regression models.
19 | }
20 | \details{
21 | The function will attempt to get these details either using
22 | \code{\link[broom:reexports]{broom::glance()}} or \code{\link[performance:model_performance]{performance::model_performance()}}. If both function
23 | provide model performance measure summaries, the function will try to
24 | combine them into a single dataframe. Measures for which these two packages
25 | have different naming conventions, both will be retained.
26 | }
27 | \examples{
28 |
29 | set.seed(123)
30 | mod <- lm(mpg ~ wt + cyl, data = mtcars)
31 | broomExtra::glance_performance(mod)
32 | }
33 |
--------------------------------------------------------------------------------
/man/grouped_augment.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/grouped_generics.R
3 | \name{grouped_augment}
4 | \alias{grouped_augment}
5 | \title{Grouped augment}
6 | \usage{
7 | grouped_augment(data, grouping.vars, ..f, ..., augment.args = list())
8 | }
9 | \arguments{
10 | \item{data}{Dataframe (or tibble) from which variables are to be taken.}
11 |
12 | \item{grouping.vars}{Grouping variables.}
13 |
14 | \item{..f}{A function, or function name as a string.}
15 |
16 | \item{...}{<\link[rlang:dyn-dots]{dynamic}> Arguments for \code{.fn}.}
17 |
18 | \item{augment.args}{A list of arguments to be used in the relevant \code{S3} method.}
19 | }
20 | \value{
21 | A \code{\link[tibble:tibble]{tibble::tibble()}} with information about data points.
22 | }
23 | \description{
24 | Augmented data from grouped analysis of any function that has
25 | \code{data} argument in its function call.
26 | }
27 | \examples{
28 | set.seed(123)
29 | library(dplyr)
30 |
31 | # linear mixed effects model
32 | grouped_augment(
33 | data = mutate(MASS::Aids2, interval = death - diag),
34 | grouping.vars = sex,
35 | ..f = lme4::lmer,
36 | formula = interval ~ age + (1 | status),
37 | control = lme4::lmerControl(optimizer = "bobyqa")
38 | )
39 | }
40 | \seealso{
41 | \code{\link{augment}}
42 | }
43 |
--------------------------------------------------------------------------------
/man/grouped_tidy.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/grouped_generics.R
3 | \name{grouped_tidy}
4 | \alias{grouped_tidy}
5 | \title{Grouped tidy analysis}
6 | \usage{
7 | grouped_tidy(data, grouping.vars, ..f, ..., tidy.args = list())
8 | }
9 | \arguments{
10 | \item{data}{Dataframe (or tibble) from which variables are to be taken.}
11 |
12 | \item{grouping.vars}{Grouping variables.}
13 |
14 | \item{..f}{A function, or function name as a string.}
15 |
16 | \item{...}{<\link[rlang:dyn-dots]{dynamic}> Arguments for \code{.fn}.}
17 |
18 | \item{tidy.args}{A list of arguments to be used in the relevant \code{S3} method.}
19 | }
20 | \value{
21 | A \code{\link[tibble:tibble]{tibble::tibble()}} with information about model components.
22 | }
23 | \description{
24 | Tidy output from grouped analysis of any function that has
25 | \code{data} argument in its function call
26 | }
27 | \examples{
28 | set.seed(123)
29 | library(dplyr)
30 |
31 | # linear mixed effects model
32 | grouped_tidy(
33 | data = mutate(MASS::Aids2, interval = death - diag),
34 | grouping.vars = sex,
35 | ..f = lme4::lmer,
36 | formula = interval ~ age + (1 | status),
37 | control = lme4::lmerControl(optimizer = "bobyqa"),
38 | tidy.args = list(conf.int = TRUE, conf.level = 0.99)
39 | )
40 | }
41 | \seealso{
42 | \code{\link{tidy}}
43 | }
44 |
--------------------------------------------------------------------------------
/pkgdown/_pkgdown.yml:
--------------------------------------------------------------------------------
1 | url: https://indrajeetpatil.github.io/broomExtra/
2 |
3 | template:
4 | bootstrap: 5
5 | bootswatch: cyborg
6 | theme: arrow-dark
7 | includes:
8 | in-header: |
9 |
10 | bslib:
11 | base_font: {google: "Roboto"}
12 | heading_font: {google: "Roboto"}
13 | code_font: {google: "JetBrains Mono"}
14 |
15 | development:
16 | mode: auto
17 |
18 | authors:
19 | Indrajeet Patil:
20 | href: https://sites.google.com/site/indrajeetspatilmorality/
21 |
22 | reference:
23 | - title: Hybrid functions from `{broom}` and `{easystats}`
24 | desc: These are the primary functions that combine functionalities from these two ecosystems.
25 | contents:
26 | - tidy_parameters
27 | - glance_performance
28 |
29 | - title: Generics for `{broom}` and `{broom.mixed}`
30 | desc: Generic functions used for tidy tibbles, model summaries, and augmented data frames.
31 | contents:
32 | - tidy
33 | - glance
34 | - augment
35 |
36 | - title: Grouped variants of generics
37 | desc: Using generic functions across all combinations of grouping variables in a dataframe.
38 | contents:
39 | - grouped_tidy
40 | - grouped_glance
41 | - grouped_augment
42 |
43 | - title: Reexported functions
44 | desc: Useful functions re-exported from other packages.
45 | contents:
46 | - "%>%"
47 |
--------------------------------------------------------------------------------
/.github/workflows/pkgdown.yaml:
--------------------------------------------------------------------------------
1 | # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
2 | # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
3 | on:
4 | push:
5 | branches: [main, master]
6 | pull_request:
7 | branches: [main, master]
8 | release:
9 | types: [published]
10 | workflow_dispatch:
11 |
12 | name: pkgdown
13 |
14 | jobs:
15 | pkgdown:
16 | runs-on: ubuntu-latest
17 | # Only restrict concurrency for non-PR jobs
18 | concurrency:
19 | group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
20 | env:
21 | GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
22 | steps:
23 | - uses: actions/checkout@v2
24 |
25 | - uses: r-lib/actions/setup-pandoc@v2
26 | with:
27 | pandoc-version: '2.18'
28 |
29 | - uses: r-lib/actions/setup-r@v2
30 | with:
31 | use-public-rspm: true
32 |
33 | - uses: r-lib/actions/setup-r-dependencies@v2
34 | with:
35 | extra-packages: r-lib/pkgdown, local::.
36 | needs: website
37 |
38 | - name: Build site
39 | run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
40 | shell: Rscript {0}
41 |
42 | - name: Deploy to GitHub pages 🚀
43 | if: github.event_name != 'pull_request'
44 | uses: JamesIves/github-pages-deploy-action@4.1.4
45 | with:
46 | clean: false
47 | branch: gh-pages
48 | folder: docs
--------------------------------------------------------------------------------
/man/tidy_parameters.Rd:
--------------------------------------------------------------------------------
1 | % Generated by roxygen2: do not edit by hand
2 | % Please edit documentation in R/hybrid_easystats.R
3 | \name{tidy_parameters}
4 | \alias{tidy_parameters}
5 | \title{Tidy dataframes of model parameters using \code{{broom}} and \code{{easystats}}}
6 | \usage{
7 | tidy_parameters(x, conf.int = TRUE, ...)
8 | }
9 | \arguments{
10 | \item{x}{An object to be converted into a tidy \code{\link[tibble:tibble]{tibble::tibble()}}.}
11 |
12 | \item{conf.int}{Indicating whether or not to include a confidence interval in
13 | the tidied output (defaults to \code{TRUE}).}
14 |
15 | \item{...}{Additional arguments that will be passed to
16 | \code{\link[parameters:model_parameters]{parameters::model_parameters()}} or \code{\link[broom:reexports]{broom::tidy()}}, whichever method
17 | works. Note that you should pay attention to different naming conventions
18 | across these packages. For example, the required confidence interval width
19 | is specified using \code{ci} argument in \code{parameters::model_parameters}, while
20 | using \code{conf.level} in \code{broom::tidy}.}
21 | }
22 | \value{
23 | A data frame of indices related to the model's parameters.
24 | }
25 | \description{
26 | Computes parameters for regression models.
27 | }
28 | \details{
29 | The function will attempt to get these details first using
30 | \code{\link[parameters:model_parameters]{parameters::model_parameters()}}, and if this fails, then using
31 | \code{\link[broom:reexports]{broom::tidy()}}.
32 | }
33 | \examples{
34 | set.seed(123)
35 | mod <- lm(mpg ~ wt + cyl, data = mtcars)
36 | broomExtra::tidy_parameters(mod)
37 | }
38 |
--------------------------------------------------------------------------------
/DESCRIPTION:
--------------------------------------------------------------------------------
1 | Type: Package
2 | Package: broomExtra
3 | Title: Enhancements for 'broom' and 'easystats' Package Families
4 | Version: 5.0.0
5 | Authors@R:
6 | person(given = "Indrajeet",
7 | family = "Patil",
8 | role = c("aut", "cre", "cph"),
9 | email = "patilindrajeet.science@gmail.com",
10 | comment = c(ORCID = "0000-0003-1995-6531", Twitter = "@patilindrajeets"))
11 | Maintainer: Indrajeet Patil
12 | Description: Provides helper functions that assist in data
13 | analysis workflows involving regression analyses. The goal is to
14 | combine the functionality offered by different set of packages
15 | ('broom', 'broom.mixed', 'parameters', and 'performance') through a
16 | common syntax to return tidy dataframes containing model parameters
17 | and performance measure summaries. The 'grouped_' variants of the
18 | generics provides a convenient way to execute functions across a
19 | combination of grouping variable(s) in a dataframe.
20 | License: GPL-3 | file LICENSE
21 | URL: https://indrajeetpatil.github.io/broomExtra/,
22 | https://github.com/IndrajeetPatil/broomExtra
23 | BugReports: https://github.com/IndrajeetPatil/broomExtra/issues
24 | Depends:
25 | R (>= 3.6.0)
26 | Imports:
27 | broom,
28 | broom.mixed (>= 0.2.9.3),
29 | dplyr,
30 | magrittr,
31 | parameters (>= 0.17.0),
32 | performance (>= 0.9.0),
33 | rlang
34 | Suggests:
35 | generics,
36 | lavaan,
37 | lme4,
38 | MASS,
39 | rmarkdown,
40 | testthat
41 | Encoding: UTF-8
42 | Language: en-US
43 | Roxygen: list(markdown = TRUE, roclets = c("rd", "namespace", "collate"))
44 | RoxygenNote: 7.2.1
45 | Config/testthat/edition: 3
46 |
--------------------------------------------------------------------------------
/tests/testthat/test-hybrid_generics.R:
--------------------------------------------------------------------------------
1 | # hybrid methods work ------------------------------------------------------
2 |
3 | test_that(
4 | desc = "hybrid methods works",
5 | code = {
6 | options(tibble.width = Inf)
7 | library(lme4)
8 |
9 | # merMord
10 | set.seed(123)
11 | lmm_mod <- lmer(Reaction ~ Days + (Days | Subject), sleepstudy)
12 | lmm_tidy <- tidy_parameters(lmm_mod, effects = "fixed")
13 | lmm_glance <- glance_performance(lmm_mod)
14 |
15 | expect_snapshot(lmm_tidy)
16 | expect_snapshot(lmm_glance)
17 |
18 | # lm
19 | set.seed(123)
20 | lm_mod <- lm(Reaction ~ Days, sleepstudy)
21 | lm_tidy <- tidy_parameters(lm_mod, vcov = TRUE)
22 | lm_glance <- glance_performance(lm_mod)
23 |
24 | expect_snapshot(lm_tidy)
25 | expect_snapshot(lm_glance)
26 |
27 | # setup
28 | set.seed(123)
29 | library(lavaan)
30 |
31 | # model specs
32 | HS.model <- " visual =~ x1 + x2 + x3
33 | textual =~ x4 + x5 + x6
34 | speed =~ x7 + x8 + x9 "
35 |
36 | # model
37 | mod_lavaan <-
38 | lavaan(
39 | HS.model,
40 | data = HolzingerSwineford1939,
41 | auto.var = TRUE,
42 | auto.fix.first = TRUE,
43 | auto.cov.lv.x = TRUE
44 | )
45 |
46 | # test
47 | expect_identical(
48 | tidy_parameters(mod_lavaan, effects = "fixed"),
49 | tidy_parameters(mod_lavaan, effects = "fixed", exponentiate = TRUE)
50 | )
51 |
52 | # model (not covered by easystats but covered by broom)
53 | expect_equal(
54 | dim(suppressWarnings(broomExtra::tidy_parameters(acf(lh, plot = FALSE)))),
55 | c(17L, 2L)
56 | )
57 |
58 | # where functions are not supposed to work
59 | expect_null(suppressWarnings(broomExtra::glance_performance(acf(lh, plot = FALSE))))
60 | expect_null(broomExtra::tidy_parameters(list(1, c("x", "y")), verbose = FALSE))
61 | }
62 | )
63 |
--------------------------------------------------------------------------------
/tests/testthat/test-generics.R:
--------------------------------------------------------------------------------
1 | # `tidy()` works ------------------------------------------------------
2 |
3 | test_that(
4 | desc = "`tidy()` works",
5 | code = {
6 | library(lme4)
7 | set.seed(123)
8 |
9 | # broom.mixed
10 | lmm.mod <- lmer(Reaction ~ Days + (Days | Subject), sleepstudy)
11 | expect_equal(
12 | broomExtra::tidy(lmm.mod), broom.mixed::tidy(lmm.mod)
13 | )
14 |
15 | # broom
16 | lm.mod <- lm(Reaction ~ Days, sleepstudy)
17 | expect_equal(broomExtra::tidy(lm.mod), broom::tidy(lm.mod))
18 | }
19 | )
20 |
21 | # `glance()` works ------------------------------------------------------
22 |
23 | test_that(
24 | desc = "`glance()` works",
25 | code = {
26 | library(lme4)
27 | set.seed(123)
28 |
29 | # broom.mixed
30 | lmm.mod <- lmer(Reaction ~ Days + (Days | Subject), sleepstudy)
31 | expect_equal(
32 | broomExtra::glance(lmm.mod), broom.mixed::glance(lmm.mod)
33 | )
34 |
35 | # broom
36 | lm.mod <- lm(Reaction ~ Days, sleepstudy)
37 | expect_equal(broomExtra::glance(lm.mod), broom::glance(lm.mod))
38 |
39 | # unsupported
40 | x <- c(2, 2:4, 4, 4, 5, 5, 7, 7, 7)
41 | y <- c(1:6, 5:4, 3:1)
42 | suppressWarnings(appr <- stats::approx(x, y, xout = x))
43 | expect_null(broomExtra::glance(appr))
44 | }
45 | )
46 |
47 | # `augment()` works ------------------------------------------------------
48 |
49 | test_that(
50 | desc = "`augment()` works",
51 | code = {
52 | library(lme4)
53 | set.seed(123)
54 |
55 | # broom.mixed
56 | lmm.mod <- lmer(Reaction ~ Days + (Days | Subject), sleepstudy)
57 | expect_equal(
58 | broomExtra::augment(lmm.mod), broom.mixed::augment(lmm.mod)
59 | )
60 |
61 | # broom
62 | lm.mod <- lm(Reaction ~ Days, sleepstudy)
63 | expect_equal(broomExtra::augment(lm.mod), broom::augment(lm.mod))
64 |
65 | # unsupported
66 | expect_null(
67 | broomExtra::augment(stats::anova(stats::lm(wt ~ am, mtcars)))
68 | )
69 | }
70 | )
71 |
--------------------------------------------------------------------------------
/.github/SUPPORT.md:
--------------------------------------------------------------------------------
1 | # Getting help with broomExtra
2 |
3 | Thanks for using broomExtra. Before filing an issue, there are a few places
4 | to explore and pieces to put together to make the process as smooth as possible.
5 |
6 | Start by making a minimal **repr**oducible **ex**ample using the
7 | [reprex](https://reprex.tidyverse.org/) package. If you haven't heard of or used
8 | reprex before, you're in for a treat! Seriously, reprex will make all of your
9 | R-question-asking endeavors easier (which is a pretty insane ROI for the five to
10 | ten minutes it'll take you to learn what it's all about). For additional reprex
11 | pointers, check out the [Get help!](https://www.tidyverse.org/help/) section of
12 | the tidyverse site.
13 |
14 | Armed with your reprex, the next step is to figure out [where to ask](https://www.tidyverse.org/help/#where-to-ask).
15 |
16 | * If it's a question: start with [community.rstudio.com](https://community.rstudio.com/),
17 | and/or StackOverflow. There are more people there to answer questions.
18 | * If it's a bug: you're in the right place, file an issue.
19 | * If you're not sure: let the community help you figure it out! If your
20 | problem _is_ a bug or a feature request, you can easily return here and
21 | report it.
22 |
23 | Before opening a new issue, be sure to [search issues and pull requests](https://github.com/tidyverse/broomExtra/issues) to make sure the
24 | bug hasn't been reported and/or already fixed in the development version. By
25 | default, the search will be pre-populated with `is:issue is:open`. You can
26 | [edit the qualifiers](https://help.github.com/articles/searching-issues-and-pull-requests/)
27 | (e.g. `is:pr`, `is:closed`) as needed. For example, you'd simply
28 | remove `is:open` to search _all_ issues in the repo, open or closed.
29 |
30 |
31 | If you _are_ in the right place, and need to file an issue, please review the
32 | ["File issues"](https://www.tidyverse.org/contribute/#issues) paragraph from
33 | the tidyverse contributing guidelines.
34 |
35 | Thanks for your help!
36 |
--------------------------------------------------------------------------------
/tests/testthat/_snaps/hybrid_generics.md:
--------------------------------------------------------------------------------
1 | # hybrid methods works
2 |
3 | Code
4 | lmm_tidy
5 | Output
6 | # A tibble: 2 x 10
7 | term estimate std.error conf.level conf.low conf.high statistic
8 |
9 | 1 (Intercept) 251. 6.82 0.95 238. 265. 36.8
10 | 2 Days 10.5 1.55 0.95 7.42 13.5 6.77
11 | df.error p.value effect
12 |
13 | 1 174 4.37e-84 fixed
14 | 2 174 1.88e-10 fixed
15 |
16 | ---
17 |
18 | Code
19 | lmm_glance
20 | Output
21 | # A tibble: 1 x 12
22 | nobs sigma loglik aic bic remlcrit df.residual aicc r2.conditional
23 |
24 | 1 180 25.6 -872. 1756. 1775. 1744. 174 1756. 0.799
25 | r2.marginal icc rmse
26 |
27 | 1 0.279 0.722 23.4
28 |
29 | ---
30 |
31 | Code
32 | lm_tidy
33 | Output
34 | # A tibble: 2 x 9
35 | term estimate std.error conf.level conf.low conf.high statistic
36 |
37 | 1 (Intercept) 251. 6.61 0.95 238. 264. 38.0
38 | 2 Days 10.5 1.24 0.95 8.02 12.9 8.45
39 | df.error p.value
40 |
41 | 1 178 2.16e-87
42 | 2 178 9.89e-15
43 |
44 | ---
45 |
46 | Code
47 | lm_glance
48 | Output
49 | # A tibble: 1 x 13
50 | r.squared adj.r.squared sigma statistic p.value df loglik aic bic
51 |
52 | 1 0.286 0.282 47.7 71.5 9.89e-15 1 -950. 1906. 1916.
53 | deviance df.residual nobs rmse
54 |
55 | 1 405252. 178 180 47.4
56 |
57 |
--------------------------------------------------------------------------------
/.github/workflows/check-full.yaml:
--------------------------------------------------------------------------------
1 | # Workflow derived from https://github.com/r-lib/actions/tree/master/examples
2 | # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
3 |
4 | on:
5 | push:
6 | branches: [main, master]
7 | pull_request:
8 | branches: [main, master]
9 |
10 | name: R-CMD-check
11 |
12 | jobs:
13 | R-CMD-check:
14 | runs-on: ${{ matrix.config.os }}
15 |
16 | name: ${{ matrix.config.os }} (${{ matrix.config.r }})
17 |
18 | strategy:
19 | fail-fast: false
20 | matrix:
21 | config:
22 | #- {os: macOS-latest, r: 'devel'}
23 | - {os: macOS-latest, r: 'release'}
24 | - {os: macOS-latest, r: 'oldrel-1'}
25 |
26 | - {os: windows-latest, r: 'devel', rtools-version: '42'}
27 | - {os: windows-latest, r: 'devel'}
28 | - {os: windows-latest, r: 'release'}
29 | - {os: windows-latest, r: 'oldrel-1'}
30 |
31 | #- {os: ubuntu-18.04, r: 'devel', http-user-agent: 'release'}
32 | - {os: ubuntu-18.04, r: 'release'}
33 | - {os: ubuntu-18.04, r: 'oldrel-1'}
34 |
35 | env:
36 | GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
37 | R_KEEP_PKG_SOURCE: yes
38 |
39 | steps:
40 | - uses: actions/checkout@v2
41 |
42 | - uses: r-lib/actions/setup-pandoc@master
43 |
44 | - uses: r-lib/actions/setup-r@master
45 | with:
46 | r-version: ${{ matrix.config.r }}
47 | rtools-version: ${{ matrix.config.rtools-version }}
48 | http-user-agent: ${{ matrix.config.http-user-agent }}
49 | use-public-rspm: true
50 |
51 | - uses: r-lib/actions/setup-r-dependencies@master
52 | with:
53 | extra-packages: rcmdcheck
54 |
55 | - uses: r-lib/actions/check-r-package@master
56 |
57 | - name: Show testthat output
58 | if: always()
59 | run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
60 | shell: bash
61 |
62 | - name: Upload check results
63 | if: failure()
64 | uses: actions/upload-artifact@main
65 | with:
66 | name: ${{ runner.os }}-r${{ matrix.config.r }}-results
67 | path: check
68 |
--------------------------------------------------------------------------------
/.github/CONTRIBUTING.md:
--------------------------------------------------------------------------------
1 | # Contributing to broomExtra
2 |
3 | This outlines how to propose a change to broomExtra. For more detailed
4 | info about contributing to this, and other tidyverse packages, please see the
5 | [**development contributing guide**](https://rstd.io/tidy-contrib).
6 |
7 | ### Fixing typos
8 |
9 | Small typos or grammatical errors in documentation may be edited directly using
10 | the GitHub web interface, so long as the changes are made in the _source_ file.
11 |
12 | * YES: you edit a roxygen comment in a `.R` file below `R/`.
13 | * NO: you edit an `.Rd` file below `man/`.
14 |
15 | ### Prerequisites
16 |
17 | Before you make a substantial pull request, you should always file an issue and
18 | make sure someone from the team agrees that it’s a problem. If you’ve found a
19 | bug, create an associated issue and illustrate the bug with a minimal
20 | [reprex](https://www.tidyverse.org/help/#reprex).
21 |
22 | ### Pull request process
23 |
24 | * We recommend that you create a Git branch for each pull request (PR).
25 | * Look at the Travis and AppVeyor build status before and after making changes.
26 | The `README` should contain badges for any continuous integration services used
27 | by the package.
28 | * New code should follow the tidyverse [style guide](http://style.tidyverse.org).
29 | You can use the [styler](https://CRAN.R-project.org/package=styler) package to
30 | apply these styles, but please don't restyle code that has nothing to do with
31 | your PR.
32 | * We use [roxygen2](https://cran.r-project.org/package=roxygen2), with
33 | [Markdown syntax](https://cran.r-project.org/web/packages/roxygen2/vignettes/markdown.html),
34 | for documentation.
35 | * We use [testthat](https://cran.r-project.org/package=testthat). Contributions
36 | with test cases included are easier to accept.
37 | * For user-facing changes, add a bullet to the top of `NEWS.md` below the
38 | current development version header describing the changes made followed by your
39 | GitHub username, and links to relevant issue(s)/PR(s).
40 |
41 | ### Code of Conduct
42 |
43 | Please note that the broomExtra project is released with a
44 | [Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this
45 | project you agree to abide by its terms.
46 |
47 | ### See tidyverse [development contributing guide](https://rstd.io/tidy-contrib)
48 | for further details.
49 |
--------------------------------------------------------------------------------
/tests/testthat/_snaps/grouped_generics.md:
--------------------------------------------------------------------------------
1 | # `grouped_tidy()` works
2 |
3 | Code
4 | list(lmer_df, lm_df)
5 | Output
6 | [[1]]
7 | # A tibble: 8 x 9
8 | sex effect group term estimate std.error statistic conf.low
9 |
10 | 1 F fixed (Intercept) 623. 161. 3.88 209.
11 | 2 F fixed age -4.34 2.61 -1.66 -11.1
12 | 3 F ran_pars status sd__(Intercept) 169. NA NA NA
13 | 4 F ran_pars Residual sd__Observation 415. NA NA NA
14 | 5 M fixed (Intercept) 553. 62.5 8.84 392.
15 | 6 M fixed age -3.60 0.696 -5.17 -5.39
16 | 7 M ran_pars status sd__(Intercept) 79.8 NA NA NA
17 | 8 M ran_pars Residual sd__Observation 355. NA NA NA
18 | conf.high
19 |
20 | 1 1037.
21 | 2 2.38
22 | 3 NA
23 | 4 NA
24 | 5 714.
25 | 6 -1.80
26 | 7 NA
27 | 8 NA
28 |
29 | [[2]]
30 | # A tibble: 4 x 8
31 | sex term estimate std.error statistic p.value conf.low conf.high
32 |
33 | 1 F (Intercept) 668. 110. 6.08 3.09e- 8 379. 957.
34 | 2 F age -6.06 2.61 -2.32 2.26e- 2 -12.9 0.815
35 | 3 M (Intercept) 547. 27.2 20.1 4.68e-84 477. 617.
36 | 4 M age -3.80 0.704 -5.40 7.38e- 8 -5.61 -1.98
37 |
38 |
39 | # `grouped_glance()` works
40 |
41 | Code
42 | list(lmer_df, lm_df)
43 | Output
44 | [[1]]
45 | # A tibble: 2 x 8
46 | sex nobs sigma logLik AIC BIC REMLcrit df.residual
47 |
48 | 1 F 89 415. -656. 1321. 1331. 1313. 85
49 | 2 M 2754 355. -20079. 40165. 40189. 40157. 2750
50 |
51 | [[2]]
52 | # A tibble: 2 x 13
53 | sex r.squared adj.r.squared sigma statistic p.value df logLik
54 |
55 | 1 F 0.0583 0.0475 431. 5.39 0.0226 1 -665.
56 | 2 M 0.0105 0.0101 359. 29.1 0.0000000738 1 -20112.
57 | AIC BIC deviance df.residual nobs
58 |
59 | 1 1336. 1344. 16139909. 87 89
60 | 2 40231. 40249. 355441032. 2752 2754
61 |
62 |
63 |
--------------------------------------------------------------------------------
/tests/testthat/test-grouped_generics.R:
--------------------------------------------------------------------------------
1 | # `grouped_tidy()` works ------------------------------------------------------
2 |
3 | test_that(
4 | desc = "`grouped_tidy()` works",
5 | code = {
6 | options(tibble.width = Inf)
7 | library(lme4)
8 |
9 | # broom.mixed
10 | set.seed(123)
11 | lmer_df <-
12 | broomExtra::grouped_tidy(
13 | data = mutate(MASS::Aids2, interval = death - diag),
14 | grouping.vars = sex,
15 | ..f = lme4::lmer,
16 | formula = interval ~ age + (1 | status),
17 | control = lme4::lmerControl(optimizer = "bobyqa"),
18 | tidy.args = list(conf.int = TRUE, conf.level = 0.99)
19 | )
20 |
21 | # broom
22 | set.seed(123)
23 | lm_df <-
24 | broomExtra::grouped_tidy(
25 | data = mutate(MASS::Aids2, interval = death - diag),
26 | grouping.vars = sex,
27 | ..f = stats::lm,
28 | formula = interval ~ age,
29 | tidy.args = list(conf.int = TRUE, conf.level = 0.99)
30 | )
31 |
32 | expect_snapshot(list(lmer_df, lm_df))
33 | }
34 | )
35 |
36 | # `grouped_glance()` works ------------------------------------------------------
37 |
38 | test_that(
39 | desc = "`grouped_glance()` works",
40 | code = {
41 | library(lme4)
42 | set.seed(123)
43 |
44 | # broom.mixed
45 | set.seed(123)
46 | lmer_df <-
47 | broomExtra::grouped_glance(
48 | data = mutate(MASS::Aids2, interval = death - diag),
49 | grouping.vars = sex,
50 | ..f = lme4::lmer,
51 | formula = interval ~ age + (1 | status),
52 | control = lme4::lmerControl(optimizer = "bobyqa")
53 | )
54 |
55 | # broom
56 | set.seed(123)
57 | lm_df <-
58 | broomExtra::grouped_glance(
59 | data = mutate(MASS::Aids2, interval = death - diag),
60 | grouping.vars = sex,
61 | ..f = stats::lm,
62 | formula = interval ~ age
63 | )
64 |
65 | expect_snapshot(list(lmer_df, lm_df))
66 | }
67 | )
68 |
69 | # `grouped_augment()` works ------------------------------------------------------
70 |
71 | test_that(
72 | desc = "`grouped_augment()` works",
73 | code = {
74 | library(lme4)
75 |
76 | # broom.mixed
77 | set.seed(123)
78 | lmer_df <-
79 | broomExtra::grouped_augment(
80 | data = mutate(MASS::Aids2, interval = death - diag),
81 | grouping.vars = sex,
82 | ..f = lme4::lmer,
83 | formula = interval ~ age + (1 | status),
84 | control = lme4::lmerControl(optimizer = "bobyqa")
85 | )
86 |
87 | # broom
88 | set.seed(123)
89 | lm_df <-
90 | broomExtra::grouped_augment(
91 | data = mutate(MASS::Aids2, interval = death - diag),
92 | grouping.vars = sex,
93 | ..f = stats::lm,
94 | formula = interval ~ age
95 | )
96 |
97 | expect_equal(dim(lmer_df)[1], 2843L)
98 | expect_equal(dim(lm_df)[1], 2843L)
99 | }
100 | )
101 |
--------------------------------------------------------------------------------
/R/generics.R:
--------------------------------------------------------------------------------
1 | #' @title Retrieve tidy dataframe if it exists
2 | #' @name tidy
3 | #'
4 | #' @description
5 | #'
6 | #' Checks if a `tidy` method exits for a given object, either in `{broom}` or in
7 | #' `{broom.mixed}`. If it does, it turn an object into a tidy tibble, if not,
8 | #' return a `NULL`. In this case, you can try the
9 | #' [broomExtra::tidy_parameters()] function.
10 | #'
11 | #' @inheritParams generics::tidy
12 | #'
13 | #' @inherit generics::tidy return value
14 | #'
15 | #' @seealso \code{\link{grouped_tidy}}, \code{\link{tidy_parameters}}
16 | #'
17 | #' @examples
18 | #' set.seed(123)
19 | #' lm.mod <- lm(Sepal.Length ~ Species, iris)
20 | #' broomExtra::tidy(x = lm.mod, conf.int = TRUE)
21 | #' @export
22 |
23 | tidy <- function(x, ...) {
24 | # check if `{broom}` has a tidy method for a given object
25 | f <- tryCatch(broom::tidy(x, ...), error = function(e) NULL)
26 |
27 | # if not, check if `{broom.mixed}` has a tidy method for a given object
28 | if (is_null(f)) f <- tryCatch(broom.mixed::tidy(x, ...), error = function(e) NULL)
29 |
30 | # return the tidy
31 | return(f)
32 | }
33 |
34 |
35 | #' @title Retrieve model summary dataframe if it exists.
36 | #' @name glance
37 | #'
38 | #' @description
39 | #'
40 | #' Checks if a `glance` method exits for a given object, either in `{broom}` or in
41 | #' `{broom.mixed}`. If it does, return the model summary dataframe, if not, return
42 | #' a `NULL`. In this case, you can try the [broomExtra::glance_performance()]
43 | #' function.
44 | #'
45 | #' @inheritParams generics::glance
46 | #'
47 | #' @inherit generics::glance return value
48 | #'
49 | #' @seealso \code{\link{grouped_glance}}, \code{\link{glance_performance}}
50 | #'
51 | #' @examples
52 | #' set.seed(123)
53 | #' lm.mod <- lm(Sepal.Length ~ Species, iris)
54 | #' broomExtra::glance(lm.mod)
55 | #' @export
56 |
57 | glance <- function(x, ...) {
58 | # check if `{broom}` has a glance method for a given object
59 | f <- tryCatch(broom::glance(x, ...), error = function(e) NULL)
60 |
61 | # if not, check if `{broom.mixed}` has a glance method for a given object
62 | if (is_null(f)) f <- tryCatch(broom.mixed::glance(x, ...), error = function(e) NULL)
63 |
64 | # return the glance
65 | return(f)
66 | }
67 |
68 | #' @title Retrieve augmented dataframe if it exists.
69 | #' @name augment
70 | #' @description
71 | #'
72 | #' Checks if a `augment` method exits for a given object, either in `{broom}` or
73 | #' in `{broom.mixed}`. If it does, return the model summary dataframe, if not,
74 | #' return a `NULL`.
75 | #'
76 | #' @inheritParams generics::augment
77 | #'
78 | #' @inherit generics::augment return value
79 | #'
80 | #' @seealso \code{\link{grouped_augment}}
81 | #'
82 | #' @examples
83 | #' set.seed(123)
84 | #' lm.mod <- lm(Sepal.Length ~ Species, iris)
85 | #' broomExtra::augment(lm.mod)
86 | #' @export
87 |
88 | augment <- function(x, ...) {
89 | # check if `{broom}` has a augment method for a given object
90 | f <- tryCatch(broom::augment(x, ...), error = function(e) NULL)
91 |
92 | # if not, check if `{broom.mixed}` has a augment method for a given object
93 | if (is_null(f)) f <- tryCatch(broom.mixed::augment(x, ...), error = function(e) NULL)
94 |
95 | # return the augment
96 | return(f)
97 | }
98 |
--------------------------------------------------------------------------------
/NEWS.md:
--------------------------------------------------------------------------------
1 | # broomExtra 5.0.0
2 |
3 | - Archived on CRAN and deprecated in favour of [easystats](https://easystats.github.io/easystats/) project.
4 |
5 | # broomExtra 4.3.2
6 |
7 | - Fixes tests for `{performance}` package update.
8 |
9 | # broomExtra 4.3.1
10 |
11 | - Fixes tests for `{broom.mixed}` package update.
12 |
13 | # broomExtra 4.3.0
14 |
15 | - Bumps needed `{easystats}` package versions.
16 |
17 | - `{rlang}` operators are no longer re-exported.
18 |
19 | # broomExtra 4.2.3
20 |
21 | - Removes `NOTE` about `LazyData` in CRAN's daily checks.
22 |
23 | # broomExtra 4.2.1
24 |
25 | - Removes `lifecycle` from `Imports` to get rid of `NOTE` in CRAN daily
26 | checks.
27 |
28 | # broomExtra 4.2.0
29 |
30 | - The tests are no longer skipped on `CRAN`.
31 |
32 | # broomExtra 4.1.0
33 |
34 | - `...` are now passed to individual methods in `glance_performance`.
35 |
36 | - Removes `ipmisc` from dependencies.
37 |
38 | # broomExtra 4.0.6
39 |
40 | - Minor tweak to the documentation.
41 |
42 | - `easystats_to_tidy_names` is now reexported from `ipmisc`.
43 |
44 | # broomExtra 4.0.5
45 |
46 | - More comprehensive coverage of terms from `easystats` packages.
47 |
48 | # broomExtra 4.0.4
49 |
50 | - Adapts tests to changes made to `parameters` package.
51 |
52 | # broomExtra 4.0.3
53 |
54 | - Minor release to fix `NOTE` produced in new `R`-devel checks.
55 |
56 | # broomExtra 4.0.2
57 |
58 | - Minor changes made to fix warnings caused by `dplyr 1.0.0`.
59 |
60 | - Retired vignette. Check out respective packages to see what methods are
61 | supported.
62 |
63 | # broomExtra 4.0.0
64 |
65 | - The `broom` package is not being actively maintained, which had become a
66 | bottleneck for both development and testing the current package. So, now the
67 | `tidy_parameters` function defaults to `parameters::model_parameters` and
68 | uses `broom` packages only if that doesn't work. This also has some other
69 | benefits (#21).
70 |
71 | # broomExtra 3.0.0
72 |
73 | - Slight modification to `easystats_to_tidy_names` to cover naming patterns
74 | from a few more `easystats` packages.
75 |
76 | - Minimum R version bumped to `3.6.0`.
77 |
78 | - Relies on `ipmisc` package for re-exports.
79 |
80 | # broomExtra 2.5.0
81 |
82 | - The `glance_performance` function now returns a combined summary dataframe
83 | from `broom` and `performance` packages, if both are available. This was
84 | done to include some unique performance measures that only the `performance`
85 | package contains (e.g., Nagelkerke's $R^2$, Tjur's $R^2$, etc.).
86 |
87 | - Thanks to Sarah, the package now has a hexsticker.
88 |
89 | # broomExtra 2.0.0
90 |
91 | - New functions that make it easy to access tidy dataframes from both
92 | `broom`-family and `easystats`-family packages with the following functions:
93 | `tidy_parameters` and `glance_performance`.
94 |
95 | - `tidy` method no longer attempt to convert entered objects to a tibble as a
96 | last resort as this was converting model objects in case the tidiers failed
97 | for some reason.
98 |
99 | # broomExtra 1.0.1
100 |
101 | - Minor internal refactoring of code.
102 |
103 | # broomExtra 1.0.0
104 |
105 | - Deprecated `boot_` functions as they added nothing over and above
106 | `rsample`.
107 |
108 | # broomExtra 0.0.6
109 |
110 | - Maintenance release to make package compatible with `dplyr 0.8.4`.
111 |
112 | # broomExtra 0.0.5
113 |
114 | - In addition to trying to extract results using tidiers from `broom` and
115 | `broom.mixed`, `broomExtra::tidy` now also attempts to convert the entered
116 | object into a `tibble` dataframe. This is solely to deal with dataframes
117 | which are often encountered while writing wrapper functions around `tidy`.
118 |
119 | - Minor refactoring of `boot_` generic functions to make them compatible with
120 | upcoming release of `tidyr`.
121 |
122 | - More operators from `tidyverse` added to reexports.
123 |
124 | # broomExtra 0.0.4
125 |
126 | - Adds new functions for bootstrapping: `boot_tidy`, `boot_glance`,
127 | `boot_augment`.
128 |
129 | # broomExtra 0.0.3
130 |
131 | - This is maintenance release to make the package compatible with `R 3.6.0`.
132 |
133 | # broomExtra 0.0.2
134 |
135 | - This is maintenance release to make the package compatible with `dplyr
136 | 0.8.1`.
137 |
138 | # broomExtra 0.0.1
139 |
140 | - Initial release.
141 |
142 |
--------------------------------------------------------------------------------
/R/hybrid_easystats.R:
--------------------------------------------------------------------------------
1 | #' @name tidy_parameters
2 | #' @title Tidy dataframes of model parameters using `{broom}` and `{easystats}`
3 | #'
4 | #' @description
5 | #'
6 | #' Computes parameters for regression models.
7 | #'
8 | #' @details The function will attempt to get these details first using
9 | #' [parameters::model_parameters()], and if this fails, then using
10 | #' [broom::tidy()].
11 | #'
12 | #' @inheritParams tidy
13 | #' @param conf.int Indicating whether or not to include a confidence interval in
14 | #' the tidied output (defaults to `TRUE`).
15 | #' @param ... Additional arguments that will be passed to
16 | #' [parameters::model_parameters()] or [broom::tidy()], whichever method
17 | #' works. Note that you should pay attention to different naming conventions
18 | #' across these packages. For example, the required confidence interval width
19 | #' is specified using `ci` argument in `parameters::model_parameters`, while
20 | #' using `conf.level` in `broom::tidy`.
21 | #'
22 | #' @return A data frame of indices related to the model's parameters.
23 | #'
24 | #' @examples
25 | #' set.seed(123)
26 | #' mod <- lm(mpg ~ wt + cyl, data = mtcars)
27 | #' broomExtra::tidy_parameters(mod)
28 | #' @import parameters
29 | #'
30 | #' @export
31 |
32 | tidy_parameters <- function(x, conf.int = TRUE, ...) {
33 | # easystats family ---------------------------------------
34 |
35 | # check if `{easystats}` family has a tidy method for a given object
36 | m <- tryCatch(
37 | expr = standardize_names(model_parameters(x, ...), style = "broom"),
38 | error = function(e) NULL
39 | )
40 |
41 |
42 | if (is_null(m)) {
43 | m <- tryCatch(
44 | expr = standardize_names(model_parameters(x), style = "broom"),
45 | error = function(e) NULL
46 | )
47 | }
48 |
49 | # broom family --------------------------------------------
50 |
51 | # check if `{broom}` family has a tidy method for a given object
52 | if (is_null(m)) {
53 | m <- tryCatch(
54 | expr = broomExtra::tidy(x, conf.int = conf.int, ...),
55 | error = function(e) NULL
56 | )
57 | }
58 |
59 | # return the final object
60 | if (is_null(m)) m else as_tibble(m)
61 | }
62 |
63 |
64 | #' @name glance_performance
65 | #' @title Model performance summary dataframes using `{broom}` and `{easystats}`
66 | #'
67 | #' @description
68 | #'
69 | #' Computes indices of model performance for regression models.
70 | #'
71 | #' @return A data frame (with one row) and one column per "index".
72 | #'
73 | #' @details The function will attempt to get these details either using
74 | #' [broom::glance()] or [performance::model_performance()]. If both function
75 | #' provide model performance measure summaries, the function will try to
76 | #' combine them into a single dataframe. Measures for which these two packages
77 | #' have different naming conventions, both will be retained.
78 | #'
79 | #' @inheritParams glance
80 | #'
81 | #' @examples
82 | #'
83 | #' set.seed(123)
84 | #' mod <- lm(mpg ~ wt + cyl, data = mtcars)
85 | #' broomExtra::glance_performance(mod)
86 | #' @import performance
87 | #'
88 | #' @export
89 |
90 | glance_performance <- function(x, ...) {
91 | # broom family --------------------------------------------
92 | # check if `{broom}` family has a tidy method for a given object
93 | df_broom <- tryCatch(broomExtra::glance(x, ...), error = function(e) NULL)
94 |
95 | # for consistency with `{performance}` output, convert column names to lowercase
96 | if (!is_null(df_broom)) df_broom %<>% rename_all(.funs = tolower)
97 |
98 | # easystats family ---------------------------------------
99 | # check if `{easystats}` family has a tidy method for a given object
100 | df_performance <- tryCatch(
101 | expr = standardize_names(model_performance(x, metrics = "all", ...), style = "broom"),
102 | error = function(e) NULL
103 | )
104 |
105 | # marry the families ---------------------------------------
106 | # combine if both are available
107 | if (!is_null(df_broom) && !is_null(df_performance)) {
108 | df_combined <- bind_cols(
109 | df_broom,
110 | select(df_performance, -intersect(names(df_broom), names(df_performance))),
111 | )
112 | }
113 |
114 | # otherwise return what's not a `NULL`
115 | if (is_null(df_broom)) df_combined <- df_performance
116 | if (is_null(df_performance)) df_combined <- df_broom
117 |
118 | # return the final object
119 | if (is_null(df_combined)) df_combined else as_tibble(df_combined)
120 | }
121 |
--------------------------------------------------------------------------------
/R/grouped_generics.R:
--------------------------------------------------------------------------------
1 | #' @title Grouped tidy analysis
2 | #' @description Tidy output from grouped analysis of any function that has
3 | #' `data` argument in its function call
4 | #' @name grouped_tidy
5 | #'
6 | #' @param data Dataframe (or tibble) from which variables are to be taken.
7 | #' @param grouping.vars Grouping variables.
8 | #' @param ..f A function, or function name as a string.
9 | #' @inheritParams rlang::exec
10 | #' @param tidy.args A list of arguments to be used in the relevant `S3` method.
11 | #'
12 | #' @import rlang
13 | #' @import dplyr
14 | #'
15 | #' @inherit tidy return value
16 | #'
17 | #' @seealso \code{\link{tidy}}
18 | #'
19 | #' @examples
20 | #' set.seed(123)
21 | #' library(dplyr)
22 | #'
23 | #' # linear mixed effects model
24 | #' grouped_tidy(
25 | #' data = mutate(MASS::Aids2, interval = death - diag),
26 | #' grouping.vars = sex,
27 | #' ..f = lme4::lmer,
28 | #' formula = interval ~ age + (1 | status),
29 | #' control = lme4::lmerControl(optimizer = "bobyqa"),
30 | #' tidy.args = list(conf.int = TRUE, conf.level = 0.99)
31 | #' )
32 | #' @export
33 |
34 | # function body
35 | grouped_tidy <- function(data,
36 | grouping.vars,
37 | ..f,
38 | ...,
39 | tidy.args = list()) {
40 | # functions passed to `group_modify` must accept
41 | # `.x` and `.y` arguments, where `.x` is the data
42 | tidy_group <- function(.x, .y) {
43 | # presumes `..f` will work with these args
44 | model <- ..f(.y = ..., data = .x)
45 |
46 | # variation on `do.call` to call function with list of arguments
47 | exec(broomExtra::tidy, model, !!!tidy.args)
48 | }
49 |
50 | # dataframe with grouped analysis results
51 | grouped_cleanup(data, enquos(grouping.vars), tidy_group)
52 | }
53 |
54 | #' @title Grouped model summary
55 | #' @description Model summary output from grouped analysis of any function that
56 | #' has `data` argument in its function call.
57 | #' @name grouped_glance
58 | #'
59 | #' @inheritParams grouped_tidy
60 | #'
61 | #' @inherit glance return value
62 | #'
63 | #' @seealso \code{\link{glance}}
64 | #'
65 | #' @examples
66 | #' set.seed(123)
67 | #' library(dplyr)
68 | #'
69 | #' # linear mixed effects model
70 | #' grouped_glance(
71 | #' data = mutate(MASS::Aids2, interval = death - diag),
72 | #' grouping.vars = sex,
73 | #' ..f = lme4::lmer,
74 | #' formula = interval ~ age + (1 | status),
75 | #' control = lme4::lmerControl(optimizer = "bobyqa")
76 | #' )
77 | #' @export
78 |
79 | # function body
80 | grouped_glance <- function(data,
81 | grouping.vars,
82 | ..f,
83 | ...) {
84 | # functions passed to `group_modify` must accept
85 | # `.x` and `.y` arguments, where `.x` is the data
86 | glance_group <- function(.x, .y) {
87 | # presumes `..f` will work with these args
88 | model <- ..f(.y = ..., data = .x)
89 |
90 | # variation on `do.call` to call function with list of arguments
91 | exec(broomExtra::glance, model)
92 | }
93 |
94 | # dataframe with grouped analysis results
95 | grouped_cleanup(data, enquos(grouping.vars), glance_group)
96 | }
97 |
98 | #' @title Grouped augment
99 | #' @description Augmented data from grouped analysis of any function that has
100 | #' `data` argument in its function call.
101 | #' @name grouped_augment
102 | #'
103 | #' @inheritParams grouped_tidy
104 | #' @param augment.args A list of arguments to be used in the relevant `S3` method.
105 | #'
106 | #' @inherit augment return value
107 | #'
108 | #' @seealso \code{\link{augment}}
109 | #'
110 | #' @examples
111 | #' set.seed(123)
112 | #' library(dplyr)
113 | #'
114 | #' # linear mixed effects model
115 | #' grouped_augment(
116 | #' data = mutate(MASS::Aids2, interval = death - diag),
117 | #' grouping.vars = sex,
118 | #' ..f = lme4::lmer,
119 | #' formula = interval ~ age + (1 | status),
120 | #' control = lme4::lmerControl(optimizer = "bobyqa")
121 | #' )
122 | #' @export
123 |
124 | # function body
125 | grouped_augment <- function(data,
126 | grouping.vars,
127 | ..f,
128 | ...,
129 | augment.args = list()) {
130 | # functions passed to `group_modify` must accept
131 | # `.x` and `.y` arguments, where `.x` is the data
132 | augment_group <- function(.x, .y) {
133 | # presumes `..f` will work with these args
134 | model <- ..f(.y = ..., data = .x)
135 |
136 | # variation on `do.call` to call function with list of arguments
137 | exec(broomExtra::augment, model, !!!augment.args)
138 | }
139 |
140 | # dataframe with grouped analysis results
141 | grouped_cleanup(data, enquos(grouping.vars), augment_group)
142 | }
143 |
144 |
145 | #' @noRd
146 |
147 | grouped_cleanup <- function(data, .vars, .f) {
148 | data %>%
149 | group_by_at(.vars, .drop = TRUE) %>%
150 | group_modify(.f) %>%
151 | ungroup()
152 | }
153 |
--------------------------------------------------------------------------------
/.github/CODE_OF_CONDUCT.md:
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1 | # Contributor Covenant Code of Conduct
2 |
3 | ## Our Pledge
4 |
5 | We as members, contributors, and leaders pledge to make participation in our
6 | community a harassment-free experience for everyone, regardless of age, body
7 | size, visible or invisible disability, ethnicity, sex characteristics, gender
8 | identity and expression, level of experience, education, socio-economic status,
9 | nationality, personal appearance, race, religion, or sexual identity and
10 | orientation.
11 |
12 | We pledge to act and interact in ways that contribute to an open, welcoming,
13 | diverse, inclusive, and healthy community.
14 |
15 | ## Our Standards
16 |
17 | Examples of behavior that contributes to a positive environment for our
18 | community include:
19 |
20 | * Demonstrating empathy and kindness toward other people
21 | * Being respectful of differing opinions, viewpoints, and experiences
22 | * Giving and gracefully accepting constructive feedback
23 | * Accepting responsibility and apologizing to those affected by our mistakes,
24 | and learning from the experience
25 | * Focusing on what is best not just for us as individuals, but for the overall
26 | community
27 |
28 | Examples of unacceptable behavior include:
29 |
30 | * The use of sexualized language or imagery, and sexual attention or
31 | advances of any kind
32 | * Trolling, insulting or derogatory comments, and personal or political attacks
33 | * Public or private harassment
34 | * Publishing others' private information, such as a physical or email
35 | address, without their explicit permission
36 | * Other conduct which could reasonably be considered inappropriate in a
37 | professional setting
38 |
39 | ## Enforcement Responsibilities
40 |
41 | Community leaders are responsible for clarifying and enforcing our standards
42 | of acceptable behavior and will take appropriate and fair corrective action in
43 | response to any behavior that they deem inappropriate, threatening, offensive,
44 | or harmful.
45 |
46 | Community leaders have the right and responsibility to remove, edit, or reject
47 | comments, commits, code, wiki edits, issues, and other contributions that are
48 | not aligned to this Code of Conduct, and will communicate reasons for moderation
49 | decisions when appropriate.
50 |
51 | ## Scope
52 |
53 | This Code of Conduct applies within all community spaces, and also applies
54 | when an individual is officially representing the community in public spaces.
55 | Examples of representing our community include using an official e-mail
56 | address, posting via an official social media account, or acting as an appointed
57 | representative at an online or offline event.
58 |
59 | ## Enforcement
60 |
61 | Instances of abusive, harassing, or otherwise unacceptable behavior may be
62 | reported to the community leaders responsible for enforcement at patilindrajeet.science@gmail.com.
63 | All complaints will be reviewed and investigated promptly and fairly.
64 |
65 | All community leaders are obligated to respect the privacy and security of the
66 | reporter of any incident.
67 |
68 | ## Enforcement Guidelines
69 |
70 | Community leaders will follow these Community Impact Guidelines in determining
71 | the consequences for any action they deem in violation of this Code of Conduct:
72 |
73 | ### 1. Correction
74 |
75 | **Community Impact**: Use of inappropriate language or other behavior deemed
76 | unprofessional or unwelcome in the community.
77 |
78 | **Consequence**: A private, written warning from community leaders, providing
79 | clarity around the nature of the violation and an explanation of why the
80 | behavior was inappropriate. A public apology may be requested.
81 |
82 | ### 2. Warning
83 |
84 | **Community Impact**: A violation through a single incident or series of
85 | actions.
86 |
87 | **Consequence**: A warning with consequences for continued behavior. No
88 | interaction with the people involved, including unsolicited interaction with
89 | those enforcing the Code of Conduct, for a specified period of time. This
90 | includes avoiding interactions in community spaces as well as external channels
91 | like social media. Violating these terms may lead to a temporary or permanent
92 | ban.
93 |
94 | ### 3. Temporary Ban
95 |
96 | **Community Impact**: A serious violation of community standards, including
97 | sustained inappropriate behavior.
98 |
99 | **Consequence**: A temporary ban from any sort of interaction or public
100 | communication with the community for a specified period of time. No public or
101 | private interaction with the people involved, including unsolicited interaction
102 | with those enforcing the Code of Conduct, is allowed during this period.
103 | Violating these terms may lead to a permanent ban.
104 |
105 | ### 4. Permanent Ban
106 |
107 | **Community Impact**: Demonstrating a pattern of violation of community
108 | standards, including sustained inappropriate behavior, harassment of an
109 | individual, or aggression toward or disparagement of classes of individuals.
110 |
111 | **Consequence**: A permanent ban from any sort of public interaction within the
112 | community.
113 |
114 | ## Attribution
115 |
116 | This Code of Conduct is adapted from the [Contributor Covenant][homepage],
117 | version 2.0,
118 | available at .
119 |
120 | Community Impact Guidelines were inspired by [Mozilla's code of conduct
121 | enforcement ladder](https://github.com/mozilla/diversity).
122 |
123 | [homepage]: https://www.contributor-covenant.org
124 |
125 | For answers to common questions about this code of conduct, see the FAQ at
126 | . Translations are available at .
127 |
--------------------------------------------------------------------------------
/README.md:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 | ## `{broomExtra}`: Enhancement for `{broom}` and `{easystats}`
5 |
6 | [](https://lifecycle.r-lib.org/articles/stages.html#deprecated)
7 |
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25 |
26 | This package has been archived on CRAN. Additionally, it is deprecated
27 | in favour of the [easystats](https://easystats.github.io/easystats/)
28 | project.
29 |
30 | The package can still be downloaded from GitHub:
31 | `pak::pak("IndrajeetPatil/broomExtra")`
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203 |
204 | ## Acknowledgments
205 |
206 | The hexsticker was generously designed by Sarah Otterstetter (Max Planck
207 | Institute for Human Development, Berlin). Thanks are also due to the
208 | maintainers and contributors to `{broom}`- and `{easystats}`-package
209 | families who have indulged in all my feature requests!
210 |
--------------------------------------------------------------------------------
/README.Rmd:
--------------------------------------------------------------------------------
1 | ---
2 | output: github_document
3 | ---
4 |
5 |
6 |
7 | ```{r, include = FALSE}
8 | knitr::opts_chunk$set(
9 | collapse = TRUE,
10 | comment = "#>"
11 | )
12 | ```
13 |
14 | ## `{broomExtra}`: Enhancement for `{broom}` and `{easystats}`
15 |
16 | [](https://lifecycle.r-lib.org/articles/stages.html#deprecated)
17 |
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39 | This package has been archived on CRAN. Additionally, it is deprecated in favour of the [easystats](https://easystats.github.io/easystats/) project.
40 |
41 | The package can still be downloaded from GitHub:
42 | `pak::pak("IndrajeetPatil/broomExtra")`
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260 |
261 |
262 |
263 | ## Acknowledgments
264 |
265 | The hexsticker was generously designed by Sarah Otterstetter (Max Planck
266 | Institute for Human Development, Berlin). Thanks are also due to the maintainers
267 | and contributors to `{broom}`- and `{easystats}`-package families who have indulged
268 | in all my feature requests!
269 |
--------------------------------------------------------------------------------
/LICENSE.md:
--------------------------------------------------------------------------------
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439 | Source to be so available, or **(2)** arrange to deprive yourself of the benefit of the
440 | patent license for this particular work, or **(3)** arrange, in a manner consistent with
441 | the requirements of this License, to extend the patent license to downstream
442 | recipients. “Knowingly relying” means you have actual knowledge that, but
443 | for the patent license, your conveying the covered work in a country, or your
444 | recipient's use of the covered work in a country, would infringe one or more
445 | identifiable patents in that country that you have reason to believe are valid.
446 |
447 | If, pursuant to or in connection with a single transaction or arrangement, you
448 | convey, or propagate by procuring conveyance of, a covered work, and grant a patent
449 | license to some of the parties receiving the covered work authorizing them to use,
450 | propagate, modify or convey a specific copy of the covered work, then the patent
451 | license you grant is automatically extended to all recipients of the covered work and
452 | works based on it.
453 |
454 | A patent license is “discriminatory” if it does not include within the
455 | scope of its coverage, prohibits the exercise of, or is conditioned on the
456 | non-exercise of one or more of the rights that are specifically granted under this
457 | License. You may not convey a covered work if you are a party to an arrangement with
458 | a third party that is in the business of distributing software, under which you make
459 | payment to the third party based on the extent of your activity of conveying the
460 | work, and under which the third party grants, to any of the parties who would receive
461 | the covered work from you, a discriminatory patent license **(a)** in connection with
462 | copies of the covered work conveyed by you (or copies made from those copies), or **(b)**
463 | primarily for and in connection with specific products or compilations that contain
464 | the covered work, unless you entered into that arrangement, or that patent license
465 | was granted, prior to 28 March 2007.
466 |
467 | Nothing in this License shall be construed as excluding or limiting any implied
468 | license or other defenses to infringement that may otherwise be available to you
469 | under applicable patent law.
470 |
471 | ### 12. No Surrender of Others' Freedom
472 |
473 | If conditions are imposed on you (whether by court order, agreement or otherwise)
474 | that contradict the conditions of this License, they do not excuse you from the
475 | conditions of this License. If you cannot convey a covered work so as to satisfy
476 | simultaneously your obligations under this License and any other pertinent
477 | obligations, then as a consequence you may not convey it at all. For example, if you
478 | agree to terms that obligate you to collect a royalty for further conveying from
479 | those to whom you convey the Program, the only way you could satisfy both those terms
480 | and this License would be to refrain entirely from conveying the Program.
481 |
482 | ### 13. Use with the GNU Affero General Public License
483 |
484 | Notwithstanding any other provision of this License, you have permission to link or
485 | combine any covered work with a work licensed under version 3 of the GNU Affero
486 | General Public License into a single combined work, and to convey the resulting work.
487 | The terms of this License will continue to apply to the part which is the covered
488 | work, but the special requirements of the GNU Affero General Public License, section
489 | 13, concerning interaction through a network will apply to the combination as such.
490 |
491 | ### 14. Revised Versions of this License
492 |
493 | The Free Software Foundation may publish revised and/or new versions of the GNU
494 | General Public License from time to time. Such new versions will be similar in spirit
495 | to the present version, but may differ in detail to address new problems or concerns.
496 |
497 | Each version is given a distinguishing version number. If the Program specifies that
498 | a certain numbered version of the GNU General Public License “or any later
499 | version” applies to it, you have the option of following the terms and
500 | conditions either of that numbered version or of any later version published by the
501 | Free Software Foundation. If the Program does not specify a version number of the GNU
502 | General Public License, you may choose any version ever published by the Free
503 | Software Foundation.
504 |
505 | If the Program specifies that a proxy can decide which future versions of the GNU
506 | General Public License can be used, that proxy's public statement of acceptance of a
507 | version permanently authorizes you to choose that version for the Program.
508 |
509 | Later license versions may give you additional or different permissions. However, no
510 | additional obligations are imposed on any author or copyright holder as a result of
511 | your choosing to follow a later version.
512 |
513 | ### 15. Disclaimer of Warranty
514 |
515 | THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.
516 | EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
517 | PROVIDE THE PROGRAM “AS IS” WITHOUT WARRANTY OF ANY KIND, EITHER
518 | EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
519 | MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE
520 | QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE
521 | DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
522 |
523 | ### 16. Limitation of Liability
524 |
525 | IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY
526 | COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM AS
527 | PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL,
528 | INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE
529 | PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE
530 | OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE
531 | WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
532 | POSSIBILITY OF SUCH DAMAGES.
533 |
534 | ### 17. Interpretation of Sections 15 and 16
535 |
536 | If the disclaimer of warranty and limitation of liability provided above cannot be
537 | given local legal effect according to their terms, reviewing courts shall apply local
538 | law that most closely approximates an absolute waiver of all civil liability in
539 | connection with the Program, unless a warranty or assumption of liability accompanies
540 | a copy of the Program in return for a fee.
541 |
542 | _END OF TERMS AND CONDITIONS_
543 |
544 | ## How to Apply These Terms to Your New Programs
545 |
546 | If you develop a new program, and you want it to be of the greatest possible use to
547 | the public, the best way to achieve this is to make it free software which everyone
548 | can redistribute and change under these terms.
549 |
550 | To do so, attach the following notices to the program. It is safest to attach them
551 | to the start of each source file to most effectively state the exclusion of warranty;
552 | and each file should have at least the “copyright” line and a pointer to
553 | where the full notice is found.
554 |
555 |
556 | Copyright (C) 2019 Indrajeet Patil
557 |
558 | This program is free software: you can redistribute it and/or modify
559 | it under the terms of the GNU General Public License as published by
560 | the Free Software Foundation, either version 3 of the License, or
561 | (at your option) any later version.
562 |
563 | This program is distributed in the hope that it will be useful,
564 | but WITHOUT ANY WARRANTY; without even the implied warranty of
565 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
566 | GNU General Public License for more details.
567 |
568 | You should have received a copy of the GNU General Public License
569 | along with this program. If not, see .
570 |
571 | Also add information on how to contact you by electronic and paper mail.
572 |
573 | If the program does terminal interaction, make it output a short notice like this
574 | when it starts in an interactive mode:
575 |
576 | broomExtra Copyright (C) 2019 Indrajeet Patil
577 | This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'.
578 | This is free software, and you are welcome to redistribute it
579 | under certain conditions; type 'show c' for details.
580 |
581 | The hypothetical commands `show w` and `show c` should show the appropriate parts of
582 | the General Public License. Of course, your program's commands might be different;
583 | for a GUI interface, you would use an “about box”.
584 |
585 | You should also get your employer (if you work as a programmer) or school, if any, to
586 | sign a “copyright disclaimer” for the program, if necessary. For more
587 | information on this, and how to apply and follow the GNU GPL, see
588 | <>.
589 |
590 | The GNU General Public License does not permit incorporating your program into
591 | proprietary programs. If your program is a subroutine library, you may consider it
592 | more useful to permit linking proprietary applications with the library. If this is
593 | what you want to do, use the GNU Lesser General Public License instead of this
594 | License. But first, please read
595 | <>.
596 |
--------------------------------------------------------------------------------
/LICENSE:
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1 | GNU GENERAL PUBLIC LICENSE
2 | Version 3, 29 June 2007
3 |
4 | Copyright (C) 2007 Free Software Foundation, Inc.
5 | Everyone is permitted to copy and distribute verbatim copies
6 | of this license document, but changing it is not allowed.
7 |
8 | Preamble
9 |
10 | The GNU General Public License is a free, copyleft license for
11 | software and other kinds of works.
12 |
13 | The licenses for most software and other practical works are designed
14 | to take away your freedom to share and change the works. By contrast,
15 | the GNU General Public License is intended to guarantee your freedom to
16 | share and change all versions of a program--to make sure it remains free
17 | software for all its users. We, the Free Software Foundation, use the
18 | GNU General Public License for most of our software; it applies also to
19 | any other work released this way by its authors. You can apply it to
20 | your programs, too.
21 |
22 | When we speak of free software, we are referring to freedom, not
23 | price. Our General Public Licenses are designed to make sure that you
24 | have the freedom to distribute copies of free software (and charge for
25 | them if you wish), that you receive source code or can get it if you
26 | want it, that you can change the software or use pieces of it in new
27 | free programs, and that you know you can do these things.
28 |
29 | To protect your rights, we need to prevent others from denying you
30 | these rights or asking you to surrender the rights. Therefore, you have
31 | certain responsibilities if you distribute copies of the software, or if
32 | you modify it: responsibilities to respect the freedom of others.
33 |
34 | For example, if you distribute copies of such a program, whether
35 | gratis or for a fee, you must pass on to the recipients the same
36 | freedoms that you received. You must make sure that they, too, receive
37 | or can get the source code. And you must show them these terms so they
38 | know their rights.
39 |
40 | Developers that use the GNU GPL protect your rights with two steps:
41 | (1) assert copyright on the software, and (2) offer you this License
42 | giving you legal permission to copy, distribute and/or modify it.
43 |
44 | For the developers' and authors' protection, the GPL clearly explains
45 | that there is no warranty for this free software. For both users' and
46 | authors' sake, the GPL requires that modified versions be marked as
47 | changed, so that their problems will not be attributed erroneously to
48 | authors of previous versions.
49 |
50 | Some devices are designed to deny users access to install or run
51 | modified versions of the software inside them, although the manufacturer
52 | can do so. This is fundamentally incompatible with the aim of
53 | protecting users' freedom to change the software. The systematic
54 | pattern of such abuse occurs in the area of products for individuals to
55 | use, which is precisely where it is most unacceptable. Therefore, we
56 | have designed this version of the GPL to prohibit the practice for those
57 | products. If such problems arise substantially in other domains, we
58 | stand ready to extend this provision to those domains in future versions
59 | of the GPL, as needed to protect the freedom of users.
60 |
61 | Finally, every program is threatened constantly by software patents.
62 | States should not allow patents to restrict development and use of
63 | software on general-purpose computers, but in those that do, we wish to
64 | avoid the special danger that patents applied to a free program could
65 | make it effectively proprietary. To prevent this, the GPL assures that
66 | patents cannot be used to render the program non-free.
67 |
68 | The precise terms and conditions for copying, distribution and
69 | modification follow.
70 |
71 | TERMS AND CONDITIONS
72 |
73 | 0. Definitions.
74 |
75 | "This License" refers to version 3 of the GNU General Public License.
76 |
77 | "Copyright" also means copyright-like laws that apply to other kinds of
78 | works, such as semiconductor masks.
79 |
80 | "The Program" refers to any copyrightable work licensed under this
81 | License. Each licensee is addressed as "you". "Licensees" and
82 | "recipients" may be individuals or organizations.
83 |
84 | To "modify" a work means to copy from or adapt all or part of the work
85 | in a fashion requiring copyright permission, other than the making of an
86 | exact copy. The resulting work is called a "modified version" of the
87 | earlier work or a work "based on" the earlier work.
88 |
89 | A "covered work" means either the unmodified Program or a work based
90 | on the Program.
91 |
92 | To "propagate" a work means to do anything with it that, without
93 | permission, would make you directly or secondarily liable for
94 | infringement under applicable copyright law, except executing it on a
95 | computer or modifying a private copy. Propagation includes copying,
96 | distribution (with or without modification), making available to the
97 | public, and in some countries other activities as well.
98 |
99 | To "convey" a work means any kind of propagation that enables other
100 | parties to make or receive copies. Mere interaction with a user through
101 | a computer network, with no transfer of a copy, is not conveying.
102 |
103 | An interactive user interface displays "Appropriate Legal Notices"
104 | to the extent that it includes a convenient and prominently visible
105 | feature that (1) displays an appropriate copyright notice, and (2)
106 | tells the user that there is no warranty for the work (except to the
107 | extent that warranties are provided), that licensees may convey the
108 | work under this License, and how to view a copy of this License. If
109 | the interface presents a list of user commands or options, such as a
110 | menu, a prominent item in the list meets this criterion.
111 |
112 | 1. Source Code.
113 |
114 | The "source code" for a work means the preferred form of the work
115 | for making modifications to it. "Object code" means any non-source
116 | form of a work.
117 |
118 | A "Standard Interface" means an interface that either is an official
119 | standard defined by a recognized standards body, or, in the case of
120 | interfaces specified for a particular programming language, one that
121 | is widely used among developers working in that language.
122 |
123 | The "System Libraries" of an executable work include anything, other
124 | than the work as a whole, that (a) is included in the normal form of
125 | packaging a Major Component, but which is not part of that Major
126 | Component, and (b) serves only to enable use of the work with that
127 | Major Component, or to implement a Standard Interface for which an
128 | implementation is available to the public in source code form. A
129 | "Major Component", in this context, means a major essential component
130 | (kernel, window system, and so on) of the specific operating system
131 | (if any) on which the executable work runs, or a compiler used to
132 | produce the work, or an object code interpreter used to run it.
133 |
134 | The "Corresponding Source" for a work in object code form means all
135 | the source code needed to generate, install, and (for an executable
136 | work) run the object code and to modify the work, including scripts to
137 | control those activities. However, it does not include the work's
138 | System Libraries, or general-purpose tools or generally available free
139 | programs which are used unmodified in performing those activities but
140 | which are not part of the work. For example, Corresponding Source
141 | includes interface definition files associated with source files for
142 | the work, and the source code for shared libraries and dynamically
143 | linked subprograms that the work is specifically designed to require,
144 | such as by intimate data communication or control flow between those
145 | subprograms and other parts of the work.
146 |
147 | The Corresponding Source need not include anything that users
148 | can regenerate automatically from other parts of the Corresponding
149 | Source.
150 |
151 | The Corresponding Source for a work in source code form is that
152 | same work.
153 |
154 | 2. Basic Permissions.
155 |
156 | All rights granted under this License are granted for the term of
157 | copyright on the Program, and are irrevocable provided the stated
158 | conditions are met. This License explicitly affirms your unlimited
159 | permission to run the unmodified Program. The output from running a
160 | covered work is covered by this License only if the output, given its
161 | content, constitutes a covered work. This License acknowledges your
162 | rights of fair use or other equivalent, as provided by copyright law.
163 |
164 | You may make, run and propagate covered works that you do not
165 | convey, without conditions so long as your license otherwise remains
166 | in force. You may convey covered works to others for the sole purpose
167 | of having them make modifications exclusively for you, or provide you
168 | with facilities for running those works, provided that you comply with
169 | the terms of this License in conveying all material for which you do
170 | not control copyright. Those thus making or running the covered works
171 | for you must do so exclusively on your behalf, under your direction
172 | and control, on terms that prohibit them from making any copies of
173 | your copyrighted material outside their relationship with you.
174 |
175 | Conveying under any other circumstances is permitted solely under
176 | the conditions stated below. Sublicensing is not allowed; section 10
177 | makes it unnecessary.
178 |
179 | 3. Protecting Users' Legal Rights From Anti-Circumvention Law.
180 |
181 | No covered work shall be deemed part of an effective technological
182 | measure under any applicable law fulfilling obligations under article
183 | 11 of the WIPO copyright treaty adopted on 20 December 1996, or
184 | similar laws prohibiting or restricting circumvention of such
185 | measures.
186 |
187 | When you convey a covered work, you waive any legal power to forbid
188 | circumvention of technological measures to the extent such circumvention
189 | is effected by exercising rights under this License with respect to
190 | the covered work, and you disclaim any intention to limit operation or
191 | modification of the work as a means of enforcing, against the work's
192 | users, your or third parties' legal rights to forbid circumvention of
193 | technological measures.
194 |
195 | 4. Conveying Verbatim Copies.
196 |
197 | You may convey verbatim copies of the Program's source code as you
198 | receive it, in any medium, provided that you conspicuously and
199 | appropriately publish on each copy an appropriate copyright notice;
200 | keep intact all notices stating that this License and any
201 | non-permissive terms added in accord with section 7 apply to the code;
202 | keep intact all notices of the absence of any warranty; and give all
203 | recipients a copy of this License along with the Program.
204 |
205 | You may charge any price or no price for each copy that you convey,
206 | and you may offer support or warranty protection for a fee.
207 |
208 | 5. Conveying Modified Source Versions.
209 |
210 | You may convey a work based on the Program, or the modifications to
211 | produce it from the Program, in the form of source code under the
212 | terms of section 4, provided that you also meet all of these conditions:
213 |
214 | a) The work must carry prominent notices stating that you modified
215 | it, and giving a relevant date.
216 |
217 | b) The work must carry prominent notices stating that it is
218 | released under this License and any conditions added under section
219 | 7. This requirement modifies the requirement in section 4 to
220 | "keep intact all notices".
221 |
222 | c) You must license the entire work, as a whole, under this
223 | License to anyone who comes into possession of a copy. This
224 | License will therefore apply, along with any applicable section 7
225 | additional terms, to the whole of the work, and all its parts,
226 | regardless of how they are packaged. This License gives no
227 | permission to license the work in any other way, but it does not
228 | invalidate such permission if you have separately received it.
229 |
230 | d) If the work has interactive user interfaces, each must display
231 | Appropriate Legal Notices; however, if the Program has interactive
232 | interfaces that do not display Appropriate Legal Notices, your
233 | work need not make them do so.
234 |
235 | A compilation of a covered work with other separate and independent
236 | works, which are not by their nature extensions of the covered work,
237 | and which are not combined with it such as to form a larger program,
238 | in or on a volume of a storage or distribution medium, is called an
239 | "aggregate" if the compilation and its resulting copyright are not
240 | used to limit the access or legal rights of the compilation's users
241 | beyond what the individual works permit. Inclusion of a covered work
242 | in an aggregate does not cause this License to apply to the other
243 | parts of the aggregate.
244 |
245 | 6. Conveying Non-Source Forms.
246 |
247 | You may convey a covered work in object code form under the terms
248 | of sections 4 and 5, provided that you also convey the
249 | machine-readable Corresponding Source under the terms of this License,
250 | in one of these ways:
251 |
252 | a) Convey the object code in, or embodied in, a physical product
253 | (including a physical distribution medium), accompanied by the
254 | Corresponding Source fixed on a durable physical medium
255 | customarily used for software interchange.
256 |
257 | b) Convey the object code in, or embodied in, a physical product
258 | (including a physical distribution medium), accompanied by a
259 | written offer, valid for at least three years and valid for as
260 | long as you offer spare parts or customer support for that product
261 | model, to give anyone who possesses the object code either (1) a
262 | copy of the Corresponding Source for all the software in the
263 | product that is covered by this License, on a durable physical
264 | medium customarily used for software interchange, for a price no
265 | more than your reasonable cost of physically performing this
266 | conveying of source, or (2) access to copy the
267 | Corresponding Source from a network server at no charge.
268 |
269 | c) Convey individual copies of the object code with a copy of the
270 | written offer to provide the Corresponding Source. This
271 | alternative is allowed only occasionally and noncommercially, and
272 | only if you received the object code with such an offer, in accord
273 | with subsection 6b.
274 |
275 | d) Convey the object code by offering access from a designated
276 | place (gratis or for a charge), and offer equivalent access to the
277 | Corresponding Source in the same way through the same place at no
278 | further charge. You need not require recipients to copy the
279 | Corresponding Source along with the object code. If the place to
280 | copy the object code is a network server, the Corresponding Source
281 | may be on a different server (operated by you or a third party)
282 | that supports equivalent copying facilities, provided you maintain
283 | clear directions next to the object code saying where to find the
284 | Corresponding Source. Regardless of what server hosts the
285 | Corresponding Source, you remain obligated to ensure that it is
286 | available for as long as needed to satisfy these requirements.
287 |
288 | e) Convey the object code using peer-to-peer transmission, provided
289 | you inform other peers where the object code and Corresponding
290 | Source of the work are being offered to the general public at no
291 | charge under subsection 6d.
292 |
293 | A separable portion of the object code, whose source code is excluded
294 | from the Corresponding Source as a System Library, need not be
295 | included in conveying the object code work.
296 |
297 | A "User Product" is either (1) a "consumer product", which means any
298 | tangible personal property which is normally used for personal, family,
299 | or household purposes, or (2) anything designed or sold for incorporation
300 | into a dwelling. In determining whether a product is a consumer product,
301 | doubtful cases shall be resolved in favor of coverage. For a particular
302 | product received by a particular user, "normally used" refers to a
303 | typical or common use of that class of product, regardless of the status
304 | of the particular user or of the way in which the particular user
305 | actually uses, or expects or is expected to use, the product. A product
306 | is a consumer product regardless of whether the product has substantial
307 | commercial, industrial or non-consumer uses, unless such uses represent
308 | the only significant mode of use of the product.
309 |
310 | "Installation Information" for a User Product means any methods,
311 | procedures, authorization keys, or other information required to install
312 | and execute modified versions of a covered work in that User Product from
313 | a modified version of its Corresponding Source. The information must
314 | suffice to ensure that the continued functioning of the modified object
315 | code is in no case prevented or interfered with solely because
316 | modification has been made.
317 |
318 | If you convey an object code work under this section in, or with, or
319 | specifically for use in, a User Product, and the conveying occurs as
320 | part of a transaction in which the right of possession and use of the
321 | User Product is transferred to the recipient in perpetuity or for a
322 | fixed term (regardless of how the transaction is characterized), the
323 | Corresponding Source conveyed under this section must be accompanied
324 | by the Installation Information. But this requirement does not apply
325 | if neither you nor any third party retains the ability to install
326 | modified object code on the User Product (for example, the work has
327 | been installed in ROM).
328 |
329 | The requirement to provide Installation Information does not include a
330 | requirement to continue to provide support service, warranty, or updates
331 | for a work that has been modified or installed by the recipient, or for
332 | the User Product in which it has been modified or installed. Access to a
333 | network may be denied when the modification itself materially and
334 | adversely affects the operation of the network or violates the rules and
335 | protocols for communication across the network.
336 |
337 | Corresponding Source conveyed, and Installation Information provided,
338 | in accord with this section must be in a format that is publicly
339 | documented (and with an implementation available to the public in
340 | source code form), and must require no special password or key for
341 | unpacking, reading or copying.
342 |
343 | 7. Additional Terms.
344 |
345 | "Additional permissions" are terms that supplement the terms of this
346 | License by making exceptions from one or more of its conditions.
347 | Additional permissions that are applicable to the entire Program shall
348 | be treated as though they were included in this License, to the extent
349 | that they are valid under applicable law. If additional permissions
350 | apply only to part of the Program, that part may be used separately
351 | under those permissions, but the entire Program remains governed by
352 | this License without regard to the additional permissions.
353 |
354 | When you convey a copy of a covered work, you may at your option
355 | remove any additional permissions from that copy, or from any part of
356 | it. (Additional permissions may be written to require their own
357 | removal in certain cases when you modify the work.) You may place
358 | additional permissions on material, added by you to a covered work,
359 | for which you have or can give appropriate copyright permission.
360 |
361 | Notwithstanding any other provision of this License, for material you
362 | add to a covered work, you may (if authorized by the copyright holders of
363 | that material) supplement the terms of this License with terms:
364 |
365 | a) Disclaiming warranty or limiting liability differently from the
366 | terms of sections 15 and 16 of this License; or
367 |
368 | b) Requiring preservation of specified reasonable legal notices or
369 | author attributions in that material or in the Appropriate Legal
370 | Notices displayed by works containing it; or
371 |
372 | c) Prohibiting misrepresentation of the origin of that material, or
373 | requiring that modified versions of such material be marked in
374 | reasonable ways as different from the original version; or
375 |
376 | d) Limiting the use for publicity purposes of names of licensors or
377 | authors of the material; or
378 |
379 | e) Declining to grant rights under trademark law for use of some
380 | trade names, trademarks, or service marks; or
381 |
382 | f) Requiring indemnification of licensors and authors of that
383 | material by anyone who conveys the material (or modified versions of
384 | it) with contractual assumptions of liability to the recipient, for
385 | any liability that these contractual assumptions directly impose on
386 | those licensors and authors.
387 |
388 | All other non-permissive additional terms are considered "further
389 | restrictions" within the meaning of section 10. If the Program as you
390 | received it, or any part of it, contains a notice stating that it is
391 | governed by this License along with a term that is a further
392 | restriction, you may remove that term. If a license document contains
393 | a further restriction but permits relicensing or conveying under this
394 | License, you may add to a covered work material governed by the terms
395 | of that license document, provided that the further restriction does
396 | not survive such relicensing or conveying.
397 |
398 | If you add terms to a covered work in accord with this section, you
399 | must place, in the relevant source files, a statement of the
400 | additional terms that apply to those files, or a notice indicating
401 | where to find the applicable terms.
402 |
403 | Additional terms, permissive or non-permissive, may be stated in the
404 | form of a separately written license, or stated as exceptions;
405 | the above requirements apply either way.
406 |
407 | 8. Termination.
408 |
409 | You may not propagate or modify a covered work except as expressly
410 | provided under this License. Any attempt otherwise to propagate or
411 | modify it is void, and will automatically terminate your rights under
412 | this License (including any patent licenses granted under the third
413 | paragraph of section 11).
414 |
415 | However, if you cease all violation of this License, then your
416 | license from a particular copyright holder is reinstated (a)
417 | provisionally, unless and until the copyright holder explicitly and
418 | finally terminates your license, and (b) permanently, if the copyright
419 | holder fails to notify you of the violation by some reasonable means
420 | prior to 60 days after the cessation.
421 |
422 | Moreover, your license from a particular copyright holder is
423 | reinstated permanently if the copyright holder notifies you of the
424 | violation by some reasonable means, this is the first time you have
425 | received notice of violation of this License (for any work) from that
426 | copyright holder, and you cure the violation prior to 30 days after
427 | your receipt of the notice.
428 |
429 | Termination of your rights under this section does not terminate the
430 | licenses of parties who have received copies or rights from you under
431 | this License. If your rights have been terminated and not permanently
432 | reinstated, you do not qualify to receive new licenses for the same
433 | material under section 10.
434 |
435 | 9. Acceptance Not Required for Having Copies.
436 |
437 | You are not required to accept this License in order to receive or
438 | run a copy of the Program. Ancillary propagation of a covered work
439 | occurring solely as a consequence of using peer-to-peer transmission
440 | to receive a copy likewise does not require acceptance. However,
441 | nothing other than this License grants you permission to propagate or
442 | modify any covered work. These actions infringe copyright if you do
443 | not accept this License. Therefore, by modifying or propagating a
444 | covered work, you indicate your acceptance of this License to do so.
445 |
446 | 10. Automatic Licensing of Downstream Recipients.
447 |
448 | Each time you convey a covered work, the recipient automatically
449 | receives a license from the original licensors, to run, modify and
450 | propagate that work, subject to this License. You are not responsible
451 | for enforcing compliance by third parties with this License.
452 |
453 | An "entity transaction" is a transaction transferring control of an
454 | organization, or substantially all assets of one, or subdividing an
455 | organization, or merging organizations. If propagation of a covered
456 | work results from an entity transaction, each party to that
457 | transaction who receives a copy of the work also receives whatever
458 | licenses to the work the party's predecessor in interest had or could
459 | give under the previous paragraph, plus a right to possession of the
460 | Corresponding Source of the work from the predecessor in interest, if
461 | the predecessor has it or can get it with reasonable efforts.
462 |
463 | You may not impose any further restrictions on the exercise of the
464 | rights granted or affirmed under this License. For example, you may
465 | not impose a license fee, royalty, or other charge for exercise of
466 | rights granted under this License, and you may not initiate litigation
467 | (including a cross-claim or counterclaim in a lawsuit) alleging that
468 | any patent claim is infringed by making, using, selling, offering for
469 | sale, or importing the Program or any portion of it.
470 |
471 | 11. Patents.
472 |
473 | A "contributor" is a copyright holder who authorizes use under this
474 | License of the Program or a work on which the Program is based. The
475 | work thus licensed is called the contributor's "contributor version".
476 |
477 | A contributor's "essential patent claims" are all patent claims
478 | owned or controlled by the contributor, whether already acquired or
479 | hereafter acquired, that would be infringed by some manner, permitted
480 | by this License, of making, using, or selling its contributor version,
481 | but do not include claims that would be infringed only as a
482 | consequence of further modification of the contributor version. For
483 | purposes of this definition, "control" includes the right to grant
484 | patent sublicenses in a manner consistent with the requirements of
485 | this License.
486 |
487 | Each contributor grants you a non-exclusive, worldwide, royalty-free
488 | patent license under the contributor's essential patent claims, to
489 | make, use, sell, offer for sale, import and otherwise run, modify and
490 | propagate the contents of its contributor version.
491 |
492 | In the following three paragraphs, a "patent license" is any express
493 | agreement or commitment, however denominated, not to enforce a patent
494 | (such as an express permission to practice a patent or covenant not to
495 | sue for patent infringement). To "grant" such a patent license to a
496 | party means to make such an agreement or commitment not to enforce a
497 | patent against the party.
498 |
499 | If you convey a covered work, knowingly relying on a patent license,
500 | and the Corresponding Source of the work is not available for anyone
501 | to copy, free of charge and under the terms of this License, through a
502 | publicly available network server or other readily accessible means,
503 | then you must either (1) cause the Corresponding Source to be so
504 | available, or (2) arrange to deprive yourself of the benefit of the
505 | patent license for this particular work, or (3) arrange, in a manner
506 | consistent with the requirements of this License, to extend the patent
507 | license to downstream recipients. "Knowingly relying" means you have
508 | actual knowledge that, but for the patent license, your conveying the
509 | covered work in a country, or your recipient's use of the covered work
510 | in a country, would infringe one or more identifiable patents in that
511 | country that you have reason to believe are valid.
512 |
513 | If, pursuant to or in connection with a single transaction or
514 | arrangement, you convey, or propagate by procuring conveyance of, a
515 | covered work, and grant a patent license to some of the parties
516 | receiving the covered work authorizing them to use, propagate, modify
517 | or convey a specific copy of the covered work, then the patent license
518 | you grant is automatically extended to all recipients of the covered
519 | work and works based on it.
520 |
521 | A patent license is "discriminatory" if it does not include within
522 | the scope of its coverage, prohibits the exercise of, or is
523 | conditioned on the non-exercise of one or more of the rights that are
524 | specifically granted under this License. You may not convey a covered
525 | work if you are a party to an arrangement with a third party that is
526 | in the business of distributing software, under which you make payment
527 | to the third party based on the extent of your activity of conveying
528 | the work, and under which the third party grants, to any of the
529 | parties who would receive the covered work from you, a discriminatory
530 | patent license (a) in connection with copies of the covered work
531 | conveyed by you (or copies made from those copies), or (b) primarily
532 | for and in connection with specific products or compilations that
533 | contain the covered work, unless you entered into that arrangement,
534 | or that patent license was granted, prior to 28 March 2007.
535 |
536 | Nothing in this License shall be construed as excluding or limiting
537 | any implied license or other defenses to infringement that may
538 | otherwise be available to you under applicable patent law.
539 |
540 | 12. No Surrender of Others' Freedom.
541 |
542 | If conditions are imposed on you (whether by court order, agreement or
543 | otherwise) that contradict the conditions of this License, they do not
544 | excuse you from the conditions of this License. If you cannot convey a
545 | covered work so as to satisfy simultaneously your obligations under this
546 | License and any other pertinent obligations, then as a consequence you may
547 | not convey it at all. For example, if you agree to terms that obligate you
548 | to collect a royalty for further conveying from those to whom you convey
549 | the Program, the only way you could satisfy both those terms and this
550 | License would be to refrain entirely from conveying the Program.
551 |
552 | 13. Use with the GNU Affero General Public License.
553 |
554 | Notwithstanding any other provision of this License, you have
555 | permission to link or combine any covered work with a work licensed
556 | under version 3 of the GNU Affero General Public License into a single
557 | combined work, and to convey the resulting work. The terms of this
558 | License will continue to apply to the part which is the covered work,
559 | but the special requirements of the GNU Affero General Public License,
560 | section 13, concerning interaction through a network will apply to the
561 | combination as such.
562 |
563 | 14. Revised Versions of this License.
564 |
565 | The Free Software Foundation may publish revised and/or new versions of
566 | the GNU General Public License from time to time. Such new versions will
567 | be similar in spirit to the present version, but may differ in detail to
568 | address new problems or concerns.
569 |
570 | Each version is given a distinguishing version number. If the
571 | Program specifies that a certain numbered version of the GNU General
572 | Public License "or any later version" applies to it, you have the
573 | option of following the terms and conditions either of that numbered
574 | version or of any later version published by the Free Software
575 | Foundation. If the Program does not specify a version number of the
576 | GNU General Public License, you may choose any version ever published
577 | by the Free Software Foundation.
578 |
579 | If the Program specifies that a proxy can decide which future
580 | versions of the GNU General Public License can be used, that proxy's
581 | public statement of acceptance of a version permanently authorizes you
582 | to choose that version for the Program.
583 |
584 | Later license versions may give you additional or different
585 | permissions. However, no additional obligations are imposed on any
586 | author or copyright holder as a result of your choosing to follow a
587 | later version.
588 |
589 | 15. Disclaimer of Warranty.
590 |
591 | THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
592 | APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
593 | HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
594 | OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
595 | THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
596 | PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
597 | IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
598 | ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
599 |
600 | 16. Limitation of Liability.
601 |
602 | IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
603 | WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
604 | THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
605 | GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
606 | USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
607 | DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
608 | PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
609 | EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
610 | SUCH DAMAGES.
611 |
612 | 17. Interpretation of Sections 15 and 16.
613 |
614 | If the disclaimer of warranty and limitation of liability provided
615 | above cannot be given local legal effect according to their terms,
616 | reviewing courts shall apply local law that most closely approximates
617 | an absolute waiver of all civil liability in connection with the
618 | Program, unless a warranty or assumption of liability accompanies a
619 | copy of the Program in return for a fee.
620 |
621 | END OF TERMS AND CONDITIONS
622 |
623 | How to Apply These Terms to Your New Programs
624 |
625 | If you develop a new program, and you want it to be of the greatest
626 | possible use to the public, the best way to achieve this is to make it
627 | free software which everyone can redistribute and change under these terms.
628 |
629 | To do so, attach the following notices to the program. It is safest
630 | to attach them to the start of each source file to most effectively
631 | state the exclusion of warranty; and each file should have at least
632 | the "copyright" line and a pointer to where the full notice is found.
633 |
634 |
635 | Copyright (C)
636 |
637 | This program is free software: you can redistribute it and/or modify
638 | it under the terms of the GNU General Public License as published by
639 | the Free Software Foundation, either version 3 of the License, or
640 | (at your option) any later version.
641 |
642 | This program is distributed in the hope that it will be useful,
643 | but WITHOUT ANY WARRANTY; without even the implied warranty of
644 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
645 | GNU General Public License for more details.
646 |
647 | You should have received a copy of the GNU General Public License
648 | along with this program. If not, see .
649 |
650 | Also add information on how to contact you by electronic and paper mail.
651 |
652 | If the program does terminal interaction, make it output a short
653 | notice like this when it starts in an interactive mode:
654 |
655 | Copyright (C)
656 | This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
657 | This is free software, and you are welcome to redistribute it
658 | under certain conditions; type `show c' for details.
659 |
660 | The hypothetical commands `show w' and `show c' should show the appropriate
661 | parts of the General Public License. Of course, your program's commands
662 | might be different; for a GUI interface, you would use an "about box".
663 |
664 | You should also get your employer (if you work as a programmer) or school,
665 | if any, to sign a "copyright disclaimer" for the program, if necessary.
666 | For more information on this, and how to apply and follow the GNU GPL, see
667 | .
668 |
669 | The GNU General Public License does not permit incorporating your program
670 | into proprietary programs. If your program is a subroutine library, you
671 | may consider it more useful to permit linking proprietary applications with
672 | the library. If this is what you want to do, use the GNU Lesser General
673 | Public License instead of this License. But first, please read
674 | .
675 |
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