├── AnisotropicDiffusionImageFilter ├── CMakeLists.txt ├── README.txt └── itk2DAnisotropicDiffusionImageFilter.cxx ├── AntiAliasBinaryImageFilter ├── CMakeLists.txt ├── README.txt ├── ViewOutputVTK.tcl ├── ViewOutputVTK4.1.1.tcl ├── itkAntiAliasBinaryImageFilterExample.cxx ├── itkSampleDataGenerator.cxx └── sample.parameters ├── Auxiliary ├── .NoDartCoverage ├── CMakeLists.txt ├── FltkImageViewer │ ├── CMakeLists.txt │ ├── GLColorSliceView.h │ ├── GLSliceView.h │ ├── GLTwoImageSliceView.h │ ├── README │ ├── SliceView.h │ ├── fltkBox3D.cxx │ ├── fltkBox3D.h │ ├── fltkClippingPlane3DDrawer.cxx │ ├── fltkClippingPlane3DDrawer.h │ ├── fltkClippingPlane3DDrawerGUI.fl │ ├── fltkCommandEvents.h │ ├── fltkCone3D.cxx │ ├── fltkCone3D.h │ ├── fltkCylinder3D.cxx │ ├── fltkCylinder3D.h │ ├── fltkDisplayGlWindowFlatGUI.fl │ ├── fltkDisplayGlWindowGUI.fl │ ├── fltkDrawer.h │ ├── fltkFrustum3D.cxx │ ├── fltkFrustum3D.h │ ├── fltkFrustumFunctionControl.h │ ├── fltkFrustumFunctionControl.txx │ ├── fltkFrustumFunctionControlGUI.fl │ ├── fltkGlDrawer.h │ ├── fltkGlWindow.cxx │ ├── fltkGlWindow.h │ ├── fltkGlWindowInteractive.cxx │ ├── fltkGlWindowInteractive.h │ ├── fltkGlWindowInteractiveFlat.cxx │ ├── fltkGlWindowInteractiveFlat.h │ ├── fltkImage2DViewer.h │ ├── fltkImage2DViewer.txx │ ├── fltkImage2DViewerGUI.fl │ ├── fltkImage2DViewerWindow.cxx │ ├── fltkImage2DViewerWindow.h │ ├── fltkImageViewer.h │ ├── fltkImageViewer.txx │ ├── fltkImageViewerGUI.fl │ ├── fltkLightButton.cxx │ ├── fltkLightButton.h │ ├── fltkPointSet2D.h │ ├── fltkPointSet2D.txx │ ├── fltkPointSet3D.h │ ├── fltkPointSet3D.txx │ ├── fltkProgressBar.cxx │ ├── fltkProgressBar.h │ ├── fltkRGBImage2DViewer.h │ ├── fltkRGBImage2DViewer.txx │ ├── fltkRGBImage2DViewerGUI.fl │ ├── fltkRGBImage2DViewerWindow.cxx │ ├── fltkRGBImage2DViewerWindow.h │ ├── fltkRegularStepGradientDescent.h │ ├── fltkRegularStepGradientDescentGUI.fl │ ├── fltkShape3D.cxx │ ├── fltkShape3D.h │ ├── fltkSlice2DDrawer.h │ ├── fltkSlice2DDrawer.txx │ ├── fltkSlice2DDrawerGUI.fl │ ├── fltkSlice3DDrawer.h │ ├── fltkSlice3DDrawer.txx │ ├── fltkSlice3DDrawerGUI.fl │ ├── fltkSphere3D.cxx │ ├── fltkSphere3D.h │ ├── fltkSphereFunctionControl.h │ ├── fltkSphereFunctionControl.txx │ ├── fltkSphereFunctionControlGUI.fl │ ├── fltkTimeProbeGUI.cxx │ ├── fltkTimeProbeGUI.h │ ├── fltkTimeProbesCollector.cxx │ ├── fltkTimeProbesCollector.h │ ├── fltkTimeProbesCollectorGUI.fl │ ├── fltkUtils.cxx │ ├── fltkUtils.h │ ├── fltkVectorImage3D.h │ ├── fltkVectorImage3D.txx │ ├── fltkWidgetRedrawCommand.h │ ├── fltkWidgetRedrawCommand.txx │ ├── fltkWindowInteractive.cxx │ └── fltkWindowInteractive.h ├── ITKFlFileWriter │ ├── CMakeLists.txt │ ├── Fl_File_ChooserModified.H │ ├── Fl_File_ChooserModified.cxx │ ├── Fl_File_ChooserModified2.cxx │ ├── ITKFlFileWriter.h │ ├── flstring.c │ ├── flstring.h │ └── vsnprintf.c ├── QtImageViewer │ ├── CMakeLists.txt │ ├── QtGlSliceView.cxx │ ├── QtGlSliceView.h │ ├── QtSlicer.cxx │ ├── QtSlicer.h │ ├── QtSlicerGUI.ui │ ├── QtSlicerHelpGUI.ui │ ├── QtSlicerTest.cxx │ └── itkLogoSmall.png ├── README.txt ├── VtkFltk │ ├── CMakeLists.txt │ ├── COPYING.LGPL │ ├── README.txt │ ├── fltkVTKImageViewer.h │ ├── fltkVTKImageViewer.txx │ ├── fltkVTKImageViewerBase.cxx │ ├── fltkVTKImageViewerBase.h │ ├── fltkVTKImageViewerGUI.fl │ ├── vtkFlRenderWindowInteractor.cxx │ ├── vtkFlRenderWindowInteractor.h │ └── vtkFlRenderWindowInteractorExample.cxx ├── vispack │ ├── itkVispackImageContainer.h │ ├── itkVispackSource.h │ └── itkVispackSource.txx └── vtk │ ├── CMakeLists.txt │ ├── ExtractIsoSurface.cxx │ ├── README.txt │ ├── ScreenShotGenerator.cxx │ ├── TkImageViewerInteractor.tcl │ ├── ViewVTKImage.tcl │ ├── WidgetObject.tcl │ ├── itkCurvatureFlowToVTK.cxx │ ├── itkImageToVTKImageFilter.h │ ├── itkImageToVTKImageFilter.txx │ ├── itkPNGVTKtoITKtoVTK.cxx │ ├── itkReadITKImage3DExtractContourVTK.cxx │ ├── itkReadITKImage3DSegmentShowVTK.cxx │ ├── itkReadITKImageSegmentShowVTK.cxx │ ├── itkReadITKImageShowSplineVTK.cxx │ ├── itkReadITKImageShowVTK.cxx │ ├── itkRegisterITKMonitorVTK.cxx │ ├── itkVTKImageToImageFilter.h │ ├── itkVTKImageToImageFilter.txx │ ├── itkVTKtoITKtoVTK.cxx │ ├── vtk2itk.cxx │ ├── vtk2itkDouble.cxx │ ├── vtkImageInclude.tcl │ ├── vtkInt.tcl │ ├── vtkKWImage.cxx │ ├── vtkKWImage.h │ ├── vtkKWImageIO.cxx │ ├── vtkKWImageIO.h │ ├── vtkPolyDataToITKMesh.cxx │ ├── vtkRegistrationMonitor.cxx │ └── vtkRegistrationMonitor.h ├── CMakeLists.txt ├── CTestConfig.cmake ├── CannyLevelSet ├── CMakeLists.txt ├── CannySegmentationLevelSet.cxx ├── CannySegmentationLevelSet.h ├── CannySegmentationLevelSetBase.cxx ├── CannySegmentationLevelSetBase.h └── CannySegmentationLevelSetGUI.fl ├── CellularSegmentation ├── CMakeLists.txt ├── CellularAggregateViewer.cxx ├── CellularAggregateViewer.h ├── CellularSegmentationApplication.cxx ├── CellularSegmentationApplication.h ├── CellularSegmentationApplicationBase.cxx ├── CellularSegmentationApplicationBase.h ├── CellularSegmentationApplicationGUI.fl ├── ClickedPointEvent.h ├── ImageSliceViewer.cxx ├── ImageSliceViewer.h ├── InteractorObserver.cxx ├── InteractorObserver.h └── main.cxx ├── ConvertBetweenFileFormats ├── CMakeLists.txt ├── ImageCompareTests.cxx ├── Testing │ └── Data │ │ ├── BigEndian.mhd │ │ ├── BigEndian.raw │ │ ├── image_in.mhd │ │ └── image_in.raw ├── castconvert.cxx ├── castconvertConfigure.h.in ├── castconvertDicomScalar.cxx ├── castconvertDicomScalarA.cxx ├── castconvertScalar.cxx ├── castconvertScalar2D.cxx ├── castconvertScalar2DA.cxx ├── castconvertScalar3D.cxx ├── castconvertScalar3DA.cxx ├── castconvertScalar4D.cxx ├── castconvertScalar4DA.cxx ├── castconverthelpers.h └── itkTestMain.h ├── Curves2DExtractor ├── CMakeLists.txt ├── README ├── ceExtractorConsole.cxx ├── ceExtractorConsole.h ├── ceExtractorConsoleBase.cxx ├── ceExtractorConsoleBase.h ├── ceExtractorConsoleGUI.fl └── main.cxx ├── Curves3DExtractor ├── CMakeLists.txt ├── PixelAccessors.h ├── ceExtractorConsole.cxx ├── ceExtractorConsole.h ├── ceExtractorConsoleBase.cxx ├── ceExtractorConsoleBase.h ├── ceExtractorConsoleGUI.fl └── main.cxx ├── DICOMApp ├── CMakeLists.txt └── main.cxx ├── DartConfig.cmake ├── DeformableModelSimplexMesh ├── CMakeLists.txt ├── ClickedPointEvent.h ├── DeformableModelApplication.cxx ├── DeformableModelApplication.h ├── DeformableModelApplicationBase.cxx ├── DeformableModelApplicationBase.h ├── DeformableModelApplicationGUI.fl ├── ImageSliceViewer.cxx ├── ImageSliceViewer.h ├── ImageSurfaceViewer.cxx ├── ImageSurfaceViewer.h ├── InteractorObserver.cxx ├── InteractorObserver.h ├── how_to_use.html ├── itkMeshTovtkPolyData.cxx ├── itkMeshTovtkPolyData.h ├── main.cxx ├── vtkPolyDataToitkMesh.cxx └── vtkPolyDataToitkMesh.h ├── DeformableRegistration3DTimeSeries ├── CMakeLists.txt ├── DeformableRegistration3DTimeSeries.cxx ├── DeformableRegistration3DTimeSeries.h ├── DeformableRegistration3DTimeSeriesBase.cxx ├── DeformableRegistration3DTimeSeriesBase.h ├── DeformableRegistration3DTimeSeriesGUI.fl ├── DicomImageReader.h ├── DicomImageReader.txx ├── DicomImageReaderBase.cxx ├── DicomImageReaderBase.h ├── DicomImageReaderGUI.fl ├── FEMRParameters1.txt ├── InteractorObserver.cxx ├── InteractorObserver.h ├── TransferFunctionEditor.cxx ├── TransferFunctionEditor.h ├── caimr.bmp └── main.cxx ├── DicomImageViewer ├── CMakeLists.txt └── DicomImageViewer.cxx ├── DigitalArchive ├── CMakeLists.txt ├── DSpaceMediaFilters │ ├── DicomFilter.java │ ├── GzipFilter.java │ ├── ITKFilter.java │ ├── LICENSE │ └── ZipFilter.java ├── FlDicomQueryChooser │ ├── ActionsHelp.html │ ├── CMakeLists.txt │ ├── FindDCMTK.cmake │ ├── FindITKApps.cmake │ ├── FlDicomQueryChooser.cxx │ ├── FlDicomQueryChooser.h │ ├── FlDicomQueryChooserGUI.fl │ ├── ImageViewerGUI.fl │ ├── fldqcDatatypes.h │ ├── fldqcLocalDirectoryQuery.cxx │ ├── fldqcLocalDirectoryQuery.h │ ├── fldqcNet.cxx │ ├── fldqcNet.h │ ├── fldqcPreferences.cxx │ ├── fldqcPreferences.h │ ├── fldqcPreferencesGUI.fl │ ├── fldqcRemoteNetworkQuery.cxx │ ├── fldqcRemoteNetworkQuery.h │ └── main.cxx └── ThumbnailGenerator │ ├── CMakeLists.txt │ ├── DicomGenerateThumbnail.cxx │ └── GenerateThumbnail.cxx ├── DistanceMapFilter ├── CMakeLists.txt ├── DistanceMapFilter.cxx ├── DistanceMapFilter.h ├── DistanceMapFilterBase.cxx ├── DistanceMapFilterBase.h ├── DistanceMapFilterGUI.fl └── main.cxx ├── DuctExtractor ├── CMakeLists.txt ├── DuctExtractor.cxx ├── DuctExtractor.h ├── DuctExtractorConsole.cxx ├── DuctExtractorConsole.h ├── DuctExtractorConsoleBase.cxx ├── DuctExtractorConsoleBase.h ├── DuctExtractorConsoleGUI.fl └── DuctExtractorConsoleGUI.txt ├── EdgeDetection ├── CMakeLists.txt ├── README ├── itk2DEdgeDetectionSample.cxx ├── itk3DEdgeDetectionSample.cxx ├── itkSWSRawFileReader.h ├── itkSWSRawFileReader.txx ├── itkmyRawFileWriter.h └── itkmyRawFileWriter.txx ├── EllipsoidInteriorExteriorSpatialFunction ├── CMakeLists.txt ├── README.doc ├── README.htm ├── README.pdf ├── README.tex ├── README_files │ ├── filelist.xml │ ├── image001.png │ ├── image002.gif │ ├── image003.wmz │ ├── image004.gif │ ├── image005.jpg │ ├── image006.jpg │ └── oledata.mso ├── ellipsoid.eps ├── ellipsoid.jpg ├── itkEllipsoidInteriorExteriorSpatialFunctionExample.cxx └── itkLogo.eps ├── FEM ├── CMakeLists.txt ├── FEMImageRegLMEx.cxx ├── FEMInputFileGenerator.cxx ├── FEMRead.cxx ├── FEMSolverHyperbolicExample.cxx ├── FEMTruss.cxx └── truss.meta ├── FORCEBUILD ├── FastMarchingLevelSet ├── CMakeLists.txt ├── FastMarchingLevelSet.cxx ├── FastMarchingLevelSet.h ├── FastMarchingLevelSetBase.cxx ├── FastMarchingLevelSetBase.h └── FastMarchingLevelSetGUI.fl ├── FindFLTK.cmake ├── FindFltkImageViewer.cmake ├── FindInsightApplications.cmake ├── FloodFilledSpatialFunction ├── CMakeLists.txt └── itkFloodFilledSpatialFunctionExample.cxx ├── FuzzyConnectedness ├── CMakeLists.txt ├── FuzzyConnectApp.cxx ├── FuzzyConnectApp.h ├── FuzzyConnectedness.cxx ├── ReadMe.doc └── ReadMe.pdf ├── GPDM2DTest ├── CMakeLists.txt ├── GPDM2DTest.cpp ├── MySegmentation.cxx ├── MySegmentation.h ├── MyTestAppUI.cxx ├── MyTestAppUI.fl └── MyTestAppUI.h ├── GPDM3DTest ├── CMakeLists.txt ├── GPDM3DTest.cpp ├── My3DView.cxx ├── My3DView.fl ├── My3DView.h ├── MySegmentation.cxx ├── MySegmentation.h ├── MyTestAppUI.cxx ├── MyTestAppUI.fl └── MyTestAppUI.h ├── GaussianFilter ├── CMakeLists.txt ├── GaussianFilter.cxx ├── GaussianFilter.h ├── GaussianFilter2D.cxx ├── GaussianFilter2D.h ├── README ├── liFilterConsole.cxx ├── liFilterConsole.h ├── liFilterConsole2D.cxx ├── liFilterConsole2D.h ├── liFilterConsole2DBase.cxx ├── liFilterConsole2DBase.h ├── liFilterConsole2DGUI.fl ├── liFilterConsoleBase.cxx ├── liFilterConsoleBase.h └── liFilterConsoleGUI.fl ├── GaussianMinimumErrorClassifier ├── CMakeLists.txt ├── GaussianMinimumErrorClassifier.cxx ├── OutputEvaluator.h ├── OutputEvaluator.txx └── readme ├── GeodesicActiveContour ├── CMakeLists.txt ├── GeodesicActiveContour.cxx ├── GeodesicActiveContour.h ├── GeodesicActiveContourBase.cxx ├── GeodesicActiveContourBase.h └── GeodesicActiveContourGUI.fl ├── IBSRValidation ├── AtlasSegmentation │ ├── CMakeLists.txt │ ├── Code │ │ ├── ApplicationBase.h │ │ ├── ApplicationBase.txx │ │ ├── AtlasLabeler.h │ │ ├── AtlasLabeler.txx │ │ ├── BrainStripValidationApp.cxx │ │ ├── BrainStripValidationApp.h │ │ ├── BrainStripValidationApp.txx │ │ ├── DemonsPreprocessor.h │ │ ├── DemonsPreprocessor.txx │ │ ├── DemonsRegistrator.h │ │ ├── DemonsRegistrator.txx │ │ ├── SimpleAppOutput.h │ │ ├── SimpleAppOutput.txx │ │ ├── ValidationInputParser.h │ │ ├── ValidationInputParser.txx │ │ ├── ValidationOutput.h │ │ └── ValidationOutput.txx │ ├── Inputs │ │ ├── input_1.txt │ │ ├── input_2.txt │ │ ├── input_3.txt │ │ ├── input_4.txt │ │ ├── input_5.txt │ │ ├── input_6.txt │ │ ├── param_1.txt │ │ ├── param_2.txt │ │ └── param_3.txt │ ├── ReadMe.txt │ └── Results │ │ ├── output_1.txt │ │ ├── output_2.txt │ │ ├── output_3.txt │ │ ├── output_4.txt │ │ ├── output_5.txt │ │ └── output_6.txt ├── CMakeLists.txt ├── Common │ ├── PGMVolumeWriter.h │ ├── PGMVolumeWriter.txx │ ├── RawSliceVolumeReader.h │ ├── RawSliceVolumeReader.txx │ ├── RawVolumeReader.h │ ├── RawVolumeReader.txx │ ├── RawVolumeWriter.h │ └── RawVolumeWriter.txx ├── FEMAtlasSegmentation │ ├── CMakeLists.txt │ ├── Code │ │ ├── FEMAtlasLabeler.h │ │ ├── FEMAtlasLabeler.txx │ │ ├── FEMBrainStripValidationApp.cxx │ │ ├── FEMBrainStripValidationApp.h │ │ ├── FEMBrainStripValidationApp.txx │ │ ├── FEMPreprocessor.h │ │ ├── FEMPreprocessor.txx │ │ ├── FEMRegistrator.h │ │ ├── FEMRegistrator.txx │ │ ├── FEMValidationInputParser.h │ │ └── FEMValidationInputParser.txx │ └── Inputs │ │ ├── FEMregLMparams3D.txt │ │ ├── input.txt │ │ └── input_resample.txt ├── IBSRClassification │ ├── CMakeLists.txt │ ├── Code │ │ ├── ClassifierApplicationBase.h │ │ ├── ClassifierApplicationBase.txx │ │ ├── ClassifierValidationInputParser.h │ │ ├── ClassifierValidationInputParser.txx │ │ ├── ClassifierValidationOutput.h │ │ ├── ClassifierValidationOutput.txx │ │ ├── GaussianClassifierValidationApp.cxx │ │ ├── GaussianClassifierValidationApp.h │ │ ├── GaussianClassifierValidationApp.txx │ │ ├── GaussianImageClassifierApp.h │ │ ├── GaussianImageClassifierApp.txx │ │ ├── KmeansClassifierValidationApp.cxx │ │ ├── KmeansClassifierValidationApp.h │ │ ├── KmeansClassifierValidationApp.txx │ │ ├── KmeansImageClassifierApp.h │ │ ├── KmeansImageClassifierApp.txx │ │ ├── MRFGaussianClassifierValidationApp.cxx │ │ ├── MRFGaussianClassifierValidationApp.h │ │ ├── MRFGaussianClassifierValidationApp.txx │ │ ├── MRFGaussianImageClassifierApp.h │ │ ├── MRFGaussianImageClassifierApp.txx │ │ ├── MRFKMeansClassifierValidationApp.h │ │ ├── MRFKMeansClassifierValidationApp.txx │ │ ├── MRFKMeansImageClassifierApp.h │ │ ├── MRFKMeansImageClassifierApp.txx │ │ └── MRFKmeansClassifierValidationApp.cxx │ ├── Inputs │ │ ├── ReadMe.txt │ │ ├── TestGaussianClassifierInput.txt │ │ ├── TestKmeansClassifierInput.txt │ │ ├── TestMRFGaussianClassifierInput.txt │ │ ├── TestMRFKmeansClassifierInput.txt │ │ ├── param100_23.txt │ │ ├── param110_3.txt │ │ ├── param111_2.txt │ │ ├── param112_2.txt │ │ ├── param11_3.txt │ │ ├── param12_3.txt │ │ ├── param13_3.txt │ │ ├── param15_3.txt │ │ ├── param16_3.txt │ │ ├── param17_3.txt │ │ ├── param191_3.txt │ │ ├── param202_3.txt │ │ ├── param205_3.txt │ │ ├── param2_4.txt │ │ ├── param4_8.txt │ │ ├── param6_10.txt │ │ ├── param7_8.txt │ │ └── param8_4.txt │ ├── ReadMe.txt │ └── Results │ │ ├── GaussianIBSRoutput.txt │ │ ├── KmeansIBSRoutput.txt │ │ ├── MRFGaussianIBSRoutput.txt │ │ └── MRFKMeansIBSRoutput.txt └── ReadMe.txt ├── ITKFilterLib ├── CMakeLists.txt ├── ITKFilterLib.cxx ├── ITKFilterLib.h └── ITKFilterLibTest.cxx ├── ITKRegistrationLib ├── CMakeLists.txt ├── ITKRegistrationLib.cxx ├── ITKRegistrationLib.h └── ITKRegistrationLibTest.cxx ├── ImageCalculator ├── CMakeLists.txt ├── ImageCalculator.cxx ├── ImageCalculatorProcess2D.cxx ├── ImageCalculatorProcess3D.cxx ├── ImageCalculatorTemplates.h ├── ImageCalculatorTests.cxx ├── ImageCalculatorUtils.cxx ├── ImageCalculatorUtils.h ├── ImageGenerate.cxx ├── Imgmath.h ├── TestImages │ ├── AllFifties.png │ ├── AllFiveHundreds.png │ ├── AllHundreds.png │ ├── AllTens.png │ ├── AllTwos.hdr │ ├── AllTwos.img │ ├── AllZeroes.png │ ├── GaussianIOFilteringTest.png │ ├── Hundred.hdr │ ├── Hundred.img │ ├── LowerHalfHundreds.png │ ├── TestCommands │ ├── TwoHundred.hdr │ ├── TwoHundred.img │ └── UpperHalfHundreds.png ├── doc │ ├── ImageCalculator.tex │ ├── InsightArticle.cls │ ├── InsightJournal.bib │ ├── InsightJournal.ist │ ├── InsightJournal.sty │ ├── Makefile │ ├── algorithm.sty │ ├── algorithmic.sty │ ├── amssymb.sty │ ├── fancyhdr.sty │ ├── figs │ │ ├── ImageCalculator.dia │ │ └── ImageCalculator.eps │ ├── floatflt.sty │ ├── fncychap.sty │ └── times.sty └── itkTestMain.h ├── ImageColorViewer ├── CMakeLists.txt ├── ImageColorViewer.cxx ├── ImageColorViewerGUI.fl └── sampleMetaHeader.mhd ├── ImageRegistration ├── CMakeLists.txt ├── ImageRegistration.cxx ├── ImageRegistration.h ├── README ├── liImageRegistrationConsole.cxx ├── liImageRegistrationConsole.h ├── liImageRegistrationConsoleBase.cxx ├── liImageRegistrationConsoleBase.h └── liImageRegistrationConsoleGUI.fl ├── ImageRegistration2D ├── CMakeLists.txt ├── CommandIterationUpdate.h ├── ImageRegistration2D.cxx ├── ImageRegistration2D.h ├── ImageRegistrationConsole.cxx ├── ImageRegistrationConsole.h ├── ImageRegistrationConsoleBase.cxx ├── ImageRegistrationConsoleBase.h └── ImageRegistrationConsoleGUI.fl ├── ImageRegistrationMFC ├── CMakeLists.txt ├── ItkRegMFC.aps ├── ItkRegMFC.cpp ├── ItkRegMFC.h ├── ItkRegMFC.rc ├── ItkRegMFCDoc.cpp ├── ItkRegMFCDoc.h ├── ItkRegMFCView.cpp ├── ItkRegMFCView.h ├── MainFrm.cpp ├── MainFrm.h ├── README_FIRST.txt ├── ReadMe.txt ├── res │ ├── ItkRegMFC.ico │ ├── ItkRegMFC.manifest │ ├── ItkRegMFC.rc2 │ ├── ItkRegMFCDoc.ico │ └── Toolbar.bmp ├── resource.h ├── stdafx.cpp └── stdafx.h ├── ImageViewer ├── CMakeLists.txt ├── ImageViewer.cxx └── ImageViewerGUI.fl ├── IntensityBased2D3DRegistration ├── CMakeLists.txt ├── GenerateProjection.cxx ├── IntensityBased2D3DRegistration.cxx └── README.txt ├── InverseConsistentLandmarkRegistration ├── BaselineResults │ ├── g1_To_g2_xdisp.hdr │ ├── g1_To_g2_ydisp.hdr │ ├── g1_To_g2_zdisp.hdr │ ├── g2_To_g1_xdisp.hdr │ ├── g2_To_g1_ydisp.hdr │ └── g2_To_g1_zdisp.hdr ├── CLReg.cxx ├── CLRegTest.cxx ├── CMakeLists.txt ├── TestInputs │ ├── grids.hdr │ ├── grids.img │ ├── set1.lmk │ └── set2.lmk ├── itkInverseConsistentLandmarkRegistration.h ├── itkInverseConsistentLandmarkRegistration.txx ├── itkInverseConsistentLandmarks.h ├── itkInverseConsistentLandmarks.txx ├── johnson_christensen_tmi02_front_page.pdf └── testScript.in ├── ItkJava ├── CMakeLists.txt ├── itkModule.cxx ├── itkModule.h └── myApp.java ├── ItkMFC ├── CMakeLists.txt ├── ItkMFC.cpp ├── ItkMFC.h ├── ItkMFC.rc ├── ItkMFCDoc.cpp ├── ItkMFCDoc.h ├── ItkMFCView.cpp ├── ItkMFCView.h ├── ItkPipeline.cxx ├── ItkPipeline.h ├── MainFrm.cpp ├── MainFrm.h ├── ReadMe.txt ├── Resource.h ├── StdAfx.cpp ├── StdAfx.h └── res │ ├── ItkMFC.ico │ ├── ItkMFC.rc2 │ ├── ItkMFCDoc.ico │ └── Toolbar.bmp ├── LandmarkInitializedMutualInformationRegistration ├── AffineRegistrator.h ├── AffineRegistrator.txx ├── CMakeLists.txt ├── DeformableRegistrator.h ├── DeformableRegistrator.txx ├── Help │ └── Index.html ├── ImageRegTool_README.txt ├── ImageRegistrationApp.h ├── ImageRegistrationApp.txx ├── LandmarkRegistrator.cxx ├── LandmarkRegistrator.h ├── LandmarkSliceViewer.h ├── LandmarkSliceViewer.txx ├── MomentRegistrator.h ├── MomentRegistrator.txx ├── RigidRegistrator.h ├── RigidRegistrator.txx ├── guiMain.fl ├── guiMainImplementation.cxx ├── guiMainImplementation.h ├── itkLeastSquaredDistanceCostFunction.h ├── itkLeastSquaredDistanceCostFunction.txx └── main.cxx ├── LevelSetSegmentation ├── CMakeLists.txt ├── README.txt ├── itk2DCannySegmentationLevelSetImageFilter.cxx ├── itk2DThresholdSegmentationLevelSetImageFilter.cxx └── vtkViewOutput.tcl ├── LevelSetSurfaceProcessing ├── CMakeLists.txt ├── README.txt ├── itk3DAnisotropicFourthOrderLevelSetImageFilter.cxx ├── itk3DIsotropicFourthOrderLevelSetImageFilter.cxx └── itk3DUnsharpMaskLevelSetImageFilter.cxx ├── LiverTumorSegmentation ├── CMakeLists.txt ├── ClickedPointEvent.h ├── ConfidenceConnectedModule.cxx ├── ConfidenceConnectedModule.h ├── ConnectedThresholdModule.cxx ├── ConnectedThresholdModule.h ├── DicomImageReader.h ├── DicomImageReader.txx ├── DicomImageReaderBase.cxx ├── DicomImageReaderBase.h ├── DicomImageReaderGUI.fl ├── ImageSliceViewer.cxx ├── ImageSliceViewer.h ├── InteractorObserver.cxx ├── InteractorObserver.h ├── LiverTumorSegmentation.cxx ├── LiverTumorSegmentation.h ├── LiverTumorSegmentationBase.cxx ├── LiverTumorSegmentationBase.h ├── LiverTumorSegmentationGUI.fl ├── ResampleVolumes.cxx ├── ThresholdLevelSetSegmentationModule.cxx ├── ThresholdLevelSetSegmentationModule.h ├── how_to_use.html ├── macros.h └── main.cxx ├── MATITK ├── Credits.txt ├── Documentation │ └── MATITK.pdf ├── PrecompiledBinaries │ ├── matitk.dll │ ├── msvcp71.dll │ └── msvcr71.dll └── src │ ├── MATITKTemplatedVariables.h │ ├── ParameterContainer.h │ ├── ParameterContainer.inl │ ├── itkcore.h │ ├── itkcore.inl │ ├── itkfiltercore.h │ ├── itkfiltercore.inl │ ├── itkregistrationcore.h │ ├── itkregistrationcore.inl │ ├── itksegmentationcore.h │ ├── itksegmentationcore.inl │ ├── matitk.cxx │ ├── matitk.h │ ├── mexopts.bat │ ├── seedcontainer.h │ ├── seedcontainer.inl │ └── typedefs.inl ├── MIValidation ├── CMakeLists.txt ├── Code │ ├── MIValidationApp.cxx │ ├── VanderbiltHeaderParser.h │ ├── VanderbiltHeaderParser.txx │ ├── VanderbiltModality.cxx │ ├── VanderbiltModality.h │ ├── VanderbiltValidationApp.h │ ├── VanderbiltValidationApp.txx │ ├── VanderbiltValidationInputParser.h │ ├── VanderbiltValidationInputParser.txx │ ├── VanderbiltValidationOutput.h │ └── VanderbiltValidationOutput.txx ├── Inputs │ ├── input_1.txt │ ├── param_1.txt │ └── param_2.txt ├── ReadMe.txt └── Results │ └── output_1.txt ├── MRIBiasCorrection ├── BiasCorrector.cxx ├── BiasFieldEstimator.cxx ├── BiasImageGenerator.cxx ├── CMakeLists.txt ├── EnergyTablePlotter.cxx ├── ImageCorrector.cxx ├── IntensityHistogram3D.cxx ├── InterSliceIntensityCorrector.cxx ├── OptionList.cxx ├── OptionList.h ├── README ├── SlabIdentifier.cxx ├── imageutils.h └── myutils.h ├── MRIRegistration ├── CMakeLists.txt ├── MIRegistration.cxx ├── MultiCompareAD.tcl ├── OptionList.cxx ├── OptionList.h ├── WindowLevelInterface2.tcl ├── mri1.bat ├── mri1.csh ├── vtk2itk2vtk.h ├── vtkImageStatistics.cxx └── vtkImageStatistics.h ├── MatroxInput ├── CMakeLists.txt ├── MatroxInput.cxx ├── MatroxViewer.cxx ├── MatroxViewer.h ├── MatroxViewerBase.cxx ├── MatroxViewerBase.h ├── MatroxViewerGUI.fl └── main.cxx ├── MetaImageImporter ├── CMakeLists.txt └── MetaImageImporter.cxx ├── MetaImageReadWrite ├── CMakeLists.txt └── MetaImageReadWrite.cxx ├── Morphogenesis ├── Bacteria.cxx ├── Bacteria.h ├── BacterialColony.cxx ├── BacterialColony.h ├── BacterialColonyGUI.fl ├── BilayerOrganism.cxx ├── BilayerOrganism.h ├── CMakeLists.txt ├── Cell.cxx ├── Cell.h ├── CellsViewer.cxx ├── CellsViewer.h ├── CellsViewerBase.cxx ├── CellsViewerBase.h ├── CellsViewerCommand.cxx ├── CellsViewerCommand.h ├── CellsViewerGUI.fl ├── CellularAggregate.cxx ├── CellularAggregate.dat ├── CellularAggregate.h ├── CommandEvents.h ├── Eukariote.cxx ├── Eukariote.h ├── Genome.cxx ├── Genome.h ├── GradientEatingBacteria.cxx ├── GradientEatingBacteria.dat ├── GradientEatingBacteria.h ├── PressureSensitiveBacteria.cxx ├── PressureSensitiveBacteria.h ├── Prokariote.cxx ├── Prokariote.h ├── README.txt └── main.cxx ├── MultiResMIRegistration ├── CMakeLists.txt ├── Common │ ├── MIMApplicationBase.h │ ├── MIMApplicationBase.txx │ ├── MIMPreprocessor.h │ ├── MIMPreprocessor.txx │ ├── MIMRegistrator.h │ ├── MIMRegistrator.txx │ ├── MultiResMIRegistration.cxx │ ├── SimpleApp.h │ ├── SimpleAppInputParser.h │ ├── SimpleAppInputParser.txx │ ├── SimpleAppOutput.h │ └── SimpleAppOutput.txx ├── ReadMe.doc ├── ReadMe.pdf └── SampleInputs │ ├── BrainWebT1toT2a.txt │ ├── BrainWebT1toT2b.txt │ ├── PracCTtoT1.txt │ └── PracPETToPD.txt ├── MultichannelTissueClassificationValidation ├── CMakeLists.txt ├── Code │ ├── GaussianImageMSClassifierApp.h │ ├── GaussianImageMSClassifierApp.txx │ ├── GaussianMSClassifierValidationApp.cxx │ ├── GaussianMSClassifierValidationApp.h │ ├── GaussianMSClassifierValidationApp.txx │ ├── KmeansImageMSClassifierApp.h │ ├── KmeansImageMSClassifierApp.txx │ ├── KmeansMSClassifierValidationApp.cxx │ ├── KmeansMSClassifierValidationApp.h │ ├── KmeansMSClassifierValidationApp.txx │ ├── MRFGaussianImageMSClassifierApp.h │ ├── MRFGaussianImageMSClassifierApp.txx │ ├── MRFGaussianMSClassifierValidationApp.cxx │ ├── MRFGaussianMSClassifierValidationApp.h │ ├── MRFGaussianMSClassifierValidationApp.txx │ ├── MRFKmeansImageMSClassifierApp.h │ ├── MRFKmeansImageMSClassifierApp.txx │ ├── MRFKmeansMSClassifierValidationApp.cxx │ ├── MRFKmeansMSClassifierValidationApp.h │ ├── MRFKmeansMSClassifierValidationApp.txx │ ├── MSClassifierApplicationBase.h │ ├── MSClassifierApplicationBase.txx │ ├── MSClassifierValidationInputParser.h │ ├── MSClassifierValidationInputParser.txx │ ├── MSClassifierValidationOutput.h │ └── MSClassifierValidationOutput.txx ├── Common │ ├── PGMVolumeWriter.h │ ├── PGMVolumeWriter.txx │ ├── RawSliceVolumeReader.h │ ├── RawSliceVolumeReader.txx │ ├── RawVolumeReader.h │ ├── RawVolumeReader.txx │ ├── RawVolumeWriter.h │ ├── RawVolumeWriter.txx │ ├── itkRawImageSequenceReader.h │ └── itkRawImageSequenceReader.txx ├── Inputs │ ├── ReadMe.txt │ ├── TestGaussianClassifierInput.txt │ ├── TestKmeansClassifierInput.txt │ ├── TestMRFGaussianClassifierInput.txt │ ├── TestMRFKmeansClassifierInput.txt │ └── paramphantom.txt ├── ReadMe.txt └── Results │ ├── GaussianMSoutput.txt │ ├── KmeansMSoutput.txt │ ├── MRFGaussianMSoutput.txt │ └── MRFKmeansMSoutput.txt ├── MutualInformationEuler2DRegistration ├── CMakeLists.txt ├── CommandIterationUpdate.h ├── MIAffine2DRegistrator.h ├── MIAffine2DRegistrator.txx ├── MIEuler2DRegistrator.h ├── MIEuler2DRegistrator.txx ├── MIScaleRegistrator.h ├── MIScaleRegistrator.txx ├── MISimilarity2DRegistrator.h ├── MISimilarity2DRegistrator.txx ├── MIThinPlateSplineRegistrator.h ├── MIThinPlateSplineRegistrator.txx ├── OutputGenerator.h ├── OutputGenerator.txx ├── Preprocessor.h ├── Preprocessor.txx ├── RegisterApplication.cxx ├── RegisterApplication.h ├── RegisterWindow.cxx ├── RegisterWindow.h ├── register.cxx ├── register.h └── registerGUI.fl ├── QtITK ├── CMakeLists.txt ├── itkQtAdaptor.h ├── itkQtLightIndicator.h ├── itkQtProgressBar.cxx ├── itkQtProgressBar.h └── qtITK.cxx ├── README.txt ├── RawImageReaderViewer ├── CMakeLists.txt ├── RawImageReaderViewer.cxx ├── itkRawImageReaderViewer.cxx ├── itkRawImageReaderViewer.h └── itkRawImageReaderViewerGUI.fl ├── RegionGrowingSegmentation ├── CMakeLists.txt ├── RegionGrowingSegmentation.cxx ├── RegionGrowingSegmentation.h ├── RegionGrowingSegmentation2D.cxx ├── RegionGrowingSegmentation2D.h ├── RegionGrowingSegmentation2DGUI.fl ├── RegionGrowingSegmentationBase.cxx ├── RegionGrowingSegmentationBase.h ├── RegionGrowingSegmentationBase2D.cxx ├── RegionGrowingSegmentationBase2D.h └── RegionGrowingSegmentationGUI.fl ├── SCIRun ├── Doc │ └── WrappingITKFiltersInSCIRun.pdf ├── Examples │ ├── CodeGenerator │ │ └── SCIRun │ │ │ ├── GenerateSCIRunCode.class │ │ │ ├── GenerateSCIRunCode.java │ │ │ ├── Generator.class │ │ │ ├── Generator.java │ │ │ ├── Parser.class │ │ │ └── Parser.java │ ├── XML │ │ ├── gui_BinaryThresholdImageFilter.xml │ │ ├── gui_CannySegmentationLevelSetImageFilter.xml │ │ ├── gui_DiscreteGuassianImageFilter.xml │ │ ├── gui_GradientAnisotropicDiffusionImageFilter.xml │ │ ├── gui_GradientRecursiveGaussianImageFilter.xml │ │ ├── gui_MeanImageFilter.xml │ │ ├── gui_ReflectImageFilter.xml │ │ ├── gui_ThresholdSegmentationLevelSetImageFilter.xml │ │ ├── gui_WatershedImageFilter.xml │ │ ├── gui_WatershedRelabeler.xml │ │ ├── gui_WatershedSegmentTreeGenerator.xml │ │ ├── gui_WatershedSegmenter.xml │ │ ├── gui_filter.dtd │ │ ├── sci_BinaryThresholdImageFilter.xml │ │ ├── sci_CannySegmentationLevelSetImageFilter.xml │ │ ├── sci_ConfidenceConnectedImageFilter.xml │ │ ├── sci_ConnectedThresholdImageFilter.xml │ │ ├── sci_CurvatureAnisotropicDiffusionImageFilter.xml │ │ ├── sci_CurvatureFlowImageFilter.xml │ │ ├── sci_DiscreteGaussianImageFilter.xml │ │ ├── sci_GradientAnisotropicDiffusionImageFilter.xml │ │ ├── sci_GradientMagnitudeImageFilter.xml │ │ ├── sci_GradientRecursiveGaussianImageFilter.xml │ │ ├── sci_IsolatedConnectedImageFilter.xml │ │ ├── sci_MeanImageFilter.xml │ │ ├── sci_NeighborhoodConnectedImageFilter.xml │ │ ├── sci_ReflectImageFilter.xml │ │ ├── sci_RescaleIntensityImageFilter.xml │ │ ├── sci_ThresholdSegmentationLevelSetImageFilter.xml │ │ ├── sci_UnaryFunctorImageFilter.xml │ │ ├── sci_VectorConfidenceConnectedImageFilter.xml │ │ ├── sci_VectorCurvatureAnisotropicDiffusionImageFilter.xml │ │ ├── sci_VectorGradientAnisotropicDiffusionImageFilter.xml │ │ ├── sci_VectorIndexSelectionCastImageFilter.xml │ │ ├── sci_WatershedImageFilter.xml │ │ ├── sci_WatershedRelabeler.xml │ │ ├── sci_WatershedSegmentTreeGenerator.xml │ │ ├── sci_WatershedSegmenter.xml │ │ └── sci_filter.dtd │ └── XSL │ │ ├── SCIRun_generateCC.xsl │ │ ├── SCIRun_generateTCL.xsl │ │ └── SCIRun_generateXML.xsl ├── ITK │ ├── itk_BinaryThresholdImageFilter.xml │ ├── itk_CannySegmentationLevelSetImageFilter.xml │ ├── itk_ConfidenceConnectedImageFilter.xml │ ├── itk_ConnectedThresholdImageFilter.xml │ ├── itk_CurvatureAnisotropicDiffusionImageFilter.xml │ ├── itk_CurvatureFlowImageFilter.xml │ ├── itk_DiscreteGaussianImageFilter.xml │ ├── itk_GradientAnisotropicDiffusionImageFilter.xml │ ├── itk_GradientMagnitudeImageFilter.xml │ ├── itk_GradientRecursiveGaussianImageFilter.xml │ ├── itk_IsolatedConnectedImageFilter.xml │ ├── itk_MeanImageFilter.xml │ ├── itk_NeighborhoodConnectedImageFilter.xml │ ├── itk_ReflectImageFilter.xml │ ├── itk_RescaleIntensityImageFilter.xml │ ├── itk_ThresholdSegmentationLevelSetImageFilter.xml │ ├── itk_UnaryFunctorImageFilter.xml │ ├── itk_VectorConfidenceConnectedImageFilter.xml │ ├── itk_VectorCurvatureAnisotropicDiffusionImageFilter.xml │ ├── itk_VectorGradientAnisotropicDiffusionImageFilter.xml │ ├── itk_VectorIndexSelectionCastImageFilter.xml │ ├── itk_WatershedImageFilter.xml │ ├── itk_WatershedRelabeler.xml │ ├── itk_WatershedSegmentTreeGenerator.xml │ ├── itk_WatershedSegmenter.xml │ └── itk_filter.dtd ├── Test │ ├── README │ ├── Validate.py │ └── Validate.xsl └── Thirdparty │ ├── xalan.jar │ ├── xalanj-license.txt │ ├── xercesImpl.jar │ └── xml-apis.jar ├── SampleProject ├── CMakeLists.txt └── itkSampleProject.cxx ├── SegmentationEditor ├── CMakeLists.txt ├── Common │ ├── CMakeLists.txt │ ├── itkWatershedFilterAndWriter.h │ ├── itkWatershedFilterAndWriter.txx │ ├── itkWatershedSegmentTreeWriter.h │ ├── itkWatershedSegmentTreeWriter.txx │ ├── vtkBinaryVolume.cxx │ ├── vtkBinaryVolume.h │ ├── vtkBinaryVolumeLogic.cxx │ ├── vtkBinaryVolumeLogic.h │ ├── vtkITKWatershedFilterAndWriter.h │ ├── vtkLookupTableEquivalencyHash.cxx │ ├── vtkLookupTableEquivalencyHash.h │ ├── vtkWSBoundingBox.cxx │ ├── vtkWSBoundingBox.h │ ├── vtkWSBoundingBoxHash.h │ ├── vtkWSBoundingBoxManager.cxx │ ├── vtkWSBoundingBoxManager.h │ ├── vtkWSLookupTableManager.cxx │ └── vtkWSLookupTableManager.h ├── Graphics │ ├── SCI_logo.gif │ ├── geek_head.gif │ ├── instructions.gif │ ├── itkLogoSmallTransparentBackground.gif │ └── uutah.gif ├── README.txt ├── Scripts │ ├── Configure.tcl │ ├── Copyright.txt │ ├── DataHelp.txt │ ├── DataModule.tcl │ ├── EditorHelp.txt │ ├── EditorModule.tcl │ ├── ExitModule.tcl │ ├── Fonts.tcl │ ├── Globals.tcl │ ├── Graphics.tcl │ ├── Help.txt │ ├── HelpModule.tcl │ ├── LicenseModule.tcl │ ├── Main.tcl │ ├── Options.tcl │ ├── PostprocessorModule.tcl │ ├── PreprocessorHelp.txt │ ├── PreprocessorModule.tcl │ ├── SegmenterHelp.txt │ ├── SegmenterModule.tcl │ ├── Utility.tcl │ └── segmenterinteraction │ │ ├── TkSegmentationWindowInteractor.tcl │ │ └── pkgIndex.tcl ├── Tutorial.pdf ├── WST.cmake └── Wrapping │ ├── CMakeLists.txt │ ├── MakePackages.tcl │ └── Tcl │ ├── CMakeLists.txt │ └── tkAppInit.cxx ├── ShapeDetectionLevelSet ├── CMakeLists.txt ├── ShapeDetectionLevelSet.cxx ├── ShapeDetectionLevelSet.h ├── ShapeDetectionLevelSetBase.cxx ├── ShapeDetectionLevelSetBase.h └── ShapeDetectionLevelSetGUI.fl ├── SimpleFuzzyConnectedness ├── CMakeLists.txt ├── FuzzySegGrayRun.cxx ├── FuzzySegGrayRun.h ├── FuzzySegGrayUI.fl └── FuzzySegMain.cpp ├── SimpleLevelSetsExample ├── CMakeLists.txt ├── README.txt ├── View2DOutputInVTK.tcl ├── View2DOutputInVTK4.1.1.tcl ├── View3DOutputInVTK.tcl ├── View3DOutputInVTK4.1.1.tcl ├── itk2DSimpleLevelSetsExample.cxx └── itk3DSimpleLevelSetsExample.cxx ├── StreamedWatershedSegmentation ├── CMakeLists.txt ├── ParameterFileParser │ ├── CMakeLists.txt │ ├── README │ ├── lex.yy.cxx │ ├── param.cxx │ ├── param.h │ ├── param.l │ ├── param.y │ ├── y.tab.cxx │ └── y.tab.h ├── README ├── VolumeChunker │ ├── CMakeLists.txt │ ├── README │ ├── catchunkfile.cxx │ ├── chunker.cxx │ ├── chunks.cxx │ ├── chunks.h │ ├── vhchunker.cxx │ └── vhunchunker.cxx ├── itkEquivalenceRelabelerApp.cxx ├── itkRelabelerApp.cxx ├── itkResolverApp.cxx ├── itkSWSBoundaryDataReader.h ├── itkSWSBoundaryDataReader.txx ├── itkSWSBoundaryDataWriter.h ├── itkSWSBoundaryDataWriter.txx ├── itkSWSEquivalencyTableReader.h ├── itkSWSEquivalencyTableReader.txx ├── itkSWSEquivalencyTableWriter.h ├── itkSWSEquivalencyTableWriter.txx ├── itkSWSRawFileReader.h ├── itkSWSRawFileReader.txx ├── itkSWSRawFileWriter.h ├── itkSWSRawFileWriter.txx ├── itkSWSSegmentTableReader.h ├── itkSWSSegmentTableReader.txx ├── itkSWSSegmentTableWriter.h ├── itkSWSSegmentTableWriter.txx ├── itkSWSSegmentTreeReader.h ├── itkSWSSegmentTreeReader.txx ├── itkSWSSegmentTreeWriter.h ├── itkSWSSegmentTreeWriter.txx ├── itkSegmenterApp.cxx └── itkTreeGeneratorApp.cxx ├── Superbuild ├── CMakeLists.txt ├── External-FLTK.cmake ├── External-ITK.cmake ├── External-VTK.cmake ├── Superbuild.cmake ├── fltk.diff └── patch-FLTK.sh.in ├── SymmetricEllipsoidInteriorExteriorSpatialFunction ├── CMakeLists.txt ├── README.doc ├── README.htm ├── README.pdf ├── README.ps ├── README.tex ├── itkSymmetricEllipsoidInteriorExteriorSpatialFunctionExample.cxx ├── symmetricEllipsoid.eps └── symmetricEllipsoid.jpg ├── ThinPlateSplines ├── CMakeLists.txt ├── ThinPlateSplinesApplication.cxx ├── ThinPlateSplinesApplication.h ├── ThinPlateSplinesApplicationBase.cxx ├── ThinPlateSplinesApplicationBase.h ├── ThinPlateSplinesApplicationGUI.fl └── main.cxx ├── ThresholdSegmentationLevelSet ├── CMakeLists.txt ├── ThresholdSegmentationLevelSet.cxx ├── ThresholdSegmentationLevelSet.h ├── ThresholdSegmentationLevelSetBase.cxx ├── ThresholdSegmentationLevelSetBase.h └── ThresholdSegmentationLevelSetGUI.fl ├── ThresholdSegmentationLevelSetFltkGui ├── CMakeLists.txt ├── ImageViewer.h ├── ImageViewer.txx ├── ImageViewerGUI.fl ├── README ├── Segmenter.cxx ├── Segmenter.h ├── SegmenterConsole.cxx ├── SegmenterConsole.h ├── SegmenterConsoleBase.cxx ├── SegmenterConsoleBase.h └── SegmenterConsoleGUI.fl ├── TumorSegmentationEvaluation ├── CMakeLists.txt ├── README.txt ├── TumorVolumeEvaluationDeveloperManual.pdf ├── TumorVolumeEvaluationUserManual.pdf ├── vtkVVPluginAPI.h ├── vvITKAntiAliasingVoxelCount.cxx ├── vvITKAntiAliasingVoxelCount.h ├── vvITKContourMeanDistance.cxx ├── vvITKFilterModule.h ├── vvITKFilterModuleBase.h ├── vvITKFilterModuleTwoInputs.h ├── vvITKHausdorffDistance.cxx ├── vvITKVolume.cxx └── vvITKVolumeOverlap.cxx ├── Utilities ├── DevelopmentSetupScripts │ ├── SetupGerrit.sh │ ├── SetupGitAliases.sh │ ├── SetupHooks.sh │ ├── SetupTopicStage.sh │ └── SetupUser.sh ├── Hooks │ ├── commit-msg │ ├── pre-commit │ └── prepare-commit-msg └── SetupForDevelopment.sh ├── VolviewPlugIns ├── CMakeLists.txt ├── README.txt ├── vtkVVPluginAPI.h ├── vvITKAntiAlias.cxx ├── vvITKBinaryMedian.cxx ├── vvITKCannyEdgeDetection.cxx ├── vvITKCannySegmentationLevelSetModule.cxx ├── vvITKCannySegmentationLevelSetModule.h ├── vvITKCannySegmentationLevelSetModule.txx ├── vvITKConfidenceConnected.cxx ├── vvITKConnectedThreshold.cxx ├── vvITKCurvatureAnisotropicDiffusion.cxx ├── vvITKCurvatureFlow.cxx ├── vvITKDanielssonDistanceMap.cxx ├── vvITKDeformableModelModule.cxx ├── vvITKDeformableModelModule.h ├── vvITKDeformableModelModule.txx ├── vvITKFastMarching.cxx ├── vvITKFastMarchingModule.cxx ├── vvITKFastMarchingModule.h ├── vvITKFastMarchingModule.txx ├── vvITKFilterModule.h ├── vvITKFilterModuleBase.h ├── vvITKFilterModuleDoubleOutput.h ├── vvITKFilterModuleRGBDoubleOutput.h ├── vvITKFilterModuleTwoInputs.h ├── vvITKFilterModuleWithCasting.h ├── vvITKFilterModuleWithRescaling.h ├── vvITKGeodesicActiveContour.cxx ├── vvITKGeodesicActiveContour.h ├── vvITKGeodesicActiveContourModule.cxx ├── vvITKGeodesicActiveContourModule.h ├── vvITKGeodesicActiveContourModule.txx ├── vvITKGradientAnisotropicDiffusion.cxx ├── vvITKGradientMagnitude.cxx ├── vvITKGradientMagnitudeRecursiveGaussian.cxx ├── vvITKImageRegistration.cxx ├── vvITKIntensityWindowing.cxx ├── vvITKIsolatedConnected.cxx ├── vvITKIsotropicFourthOrderLevelSet.cxx ├── vvITKLandmarkWarping.cxx ├── vvITKMask.cxx ├── vvITKMask.h ├── vvITKMaskNegated.cxx ├── vvITKMaskNegated.h ├── vvITKMedian.cxx ├── vvITKRescaleIntensityTo8Bits.cxx ├── vvITKScalarImageKMeansClassifier.cxx ├── vvITKShapeDetectionModule.cxx ├── vvITKShapeDetectionModule.h ├── vvITKShapeDetectionModule.txx ├── vvITKSigmoid.cxx ├── vvITKSurfaceSpline.cxx ├── vvITKSurfaceSpline.h ├── vvITKSurfaceSpline.txx ├── vvITKThresholdSegmentationLevelSet.cxx ├── vvITKThresholdSegmentationLevelSet.h ├── vvITKVectorConfidenceConnected.cxx ├── vvITKWatershedModule.cxx ├── vvITKWatershedModule.h ├── vvITKWatershedModule.txx ├── vvITKWatershedRGBModule.cxx ├── vvITKWatershedRGBModule.h └── vvITKWatershedRGBModule.txx ├── VoronoiSegmentation ├── CMakeLists.txt ├── VDSegGrayRun.cxx ├── VDSegGrayRun.h ├── VDSegGrayUI.fl └── VDSegMain.cpp └── vtkITK ├── CMakeLists.txt ├── Common ├── CMakeLists.txt ├── vtkITKAntiAliasBinaryImageFilter.h ├── vtkITKArchetypeImageSeriesReader.cxx ├── vtkITKArchetypeImageSeriesReader.h ├── vtkITKBilateralImageFilter.h ├── vtkITKConfidenceConnectedImageFilter.h ├── vtkITKConnectedThresholdImageFilter.h ├── vtkITKCurvatureAnisotropicDiffusionImageFilter.h ├── vtkITKCurvatureAnisotropicDiffusionImageFilterSF.h ├── vtkITKDanielssonDistanceMapImageFilter.h ├── vtkITKDiscreteGaussianImageFilter.h ├── vtkITKGradientAnisotropicDiffusionImageFilter.h ├── vtkITKGradientMagnitudeImageFilter.h ├── vtkITKGradientMagnitudeRecursiveGaussianImageFilterFF.h ├── vtkITKGradientMagnitudeRecursiveGaussianImageFilterSS.h ├── vtkITKGrayscaleFillholeImageFilter.h ├── vtkITKImageToImageFilter.h ├── vtkITKImageToImageFilter2DFF.h ├── vtkITKImageToImageFilterF2F.h ├── vtkITKImageToImageFilterF2F2.h ├── vtkITKImageToImageFilterF3F3.h ├── vtkITKImageToImageFilterFF.h ├── vtkITKImageToImageFilterFUL.h ├── vtkITKImageToImageFilterSF.h ├── vtkITKImageToImageFilterSS.h ├── vtkITKImageToImageFilterSUL.h ├── vtkITKImageToImageFilterULUL.h ├── vtkITKImageToImageFilterUSUL.h ├── vtkITKImageToImageFilterUSUS.h ├── vtkITKIsolateConnectedImageFilter.h ├── vtkITKIsolatedConnectedImageFilter.h ├── vtkITKLaplacianSegmentationLevelSetImageFilter.h ├── vtkITKMutualInformationTransform.cxx ├── vtkITKMutualInformationTransform.h ├── vtkITKNeighborhoodConnectedImageFilter.h ├── vtkITKNormalizeImageFilter.h ├── vtkITKNormalizeImageFilterSF.h ├── vtkITKOtsuThresholdImageFilter.h ├── vtkITKPDEDeformableRegistrationFilter.h ├── vtkITKRelabelComponentImageFilter.h ├── vtkITKSmoothingRecursiveGaussianImageFilter.h ├── vtkITKSmoothingRecursiveGaussianImageFilterSS.h ├── vtkITKStatisticsImageFilterULUL.h ├── vtkITKThresholdSegmentationLevelSetImageFilter.h ├── vtkITKTobogganImageFilter.h ├── vtkITKUtility.h ├── vtkITKWatershedImageFilter.h └── vtkITKWatershedImageFilterSUL.h ├── README.txt ├── Scripts ├── ConnectedThreshold.tcl ├── DemoMutual.tcl ├── TestMutualInformation.tcl └── WindowLevelInterface2.tcl ├── Wrapping ├── CMakeLists.txt └── Tcl │ ├── CMakeLists.txt │ ├── MakePackages.tcl │ └── tkAppInit.cxx ├── vtkITK.cmake └── vtkITKToolkits.h.in /AnisotropicDiffusionImageFilter/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKApps/HEAD/AnisotropicDiffusionImageFilter/CMakeLists.txt 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