├── .gitignore ├── DialogCheckbox.py ├── ImageImport.py ├── ImageImport.sh ├── ImageImport.ui ├── LICENSE ├── Logo-F-TRACT.xpm ├── MNI_Atlases ├── AAL1_2018_labels.txt ├── AAL1_2018_reslice.nii.gz ├── AAL2_labels.txt ├── AAL2_reslice.nii.gz ├── AAL3_labels.txt ├── AAL3_reslice.nii.gz ├── AICHA_labels.txt ├── AICHA_reslice.nii.gz ├── DKT40_reslice.nii.gz ├── HCP-MMP1_on_MNI305_labels.txt ├── HCP-MMP1_on_MNI305_reslice.nii.gz ├── JuBrain_Map_icbm_v25_lr_labels.txt ├── JuBrain_Map_icbm_v25_lr_reslice.nii.gz ├── Lausanne2008-125.nii.gz ├── Lausanne2008-250.nii.gz ├── Lausanne2008-33.nii.gz ├── Lausanne2008-500.nii.gz ├── Lausanne2008-60.nii.gz ├── colin27_MNI_MarsAtlas_reslice.nii.gz ├── freesurfer_parcelisation_mni2.nii.gz ├── insula_icbm152b.nii.gz ├── insula_icbm152b_labels.txt ├── insula_icbm152b_reslice.nii.gz ├── rAALSEEG12.nii.gz ├── rAALSEEG12Dilate.nii.gz ├── rAALSEEG12Dilate_labels.txt ├── rAALSEEG12_labels.txt ├── rBrodmannSEEG3spm12.nii.gz ├── rHammersSEEG12.nii.gz ├── rHammersSEEG12_labels.txt └── rbrodmann.nii.gz ├── MNI_Brainvisa ├── Gre_2016_MNI1_L_gyriVolume.nii.gz ├── Gre_2016_MNI1_R_gyriVolume.nii.gz ├── leftHippocampusGre_2016_MNI1.nii.gz └── rightHippocampusGre_2016_MNI1.nii.gz ├── README.md ├── TimerMessageBox.py ├── batch_csv.py ├── batch_importfs.py ├── bipoleLabelsDisplay.ui ├── bipoleSEEGColors.py ├── convert_mni2csv.py ├── convert_mni2csv_old.py ├── doc └── user_documentation.pdf ├── docs ├── IntranatInstallationBrainVisa5.rst ├── Makefile ├── conf.py ├── img │ ├── img1.png │ ├── img10.png │ ├── img11.png │ ├── img12.png │ ├── img13.png │ ├── img14.png │ ├── img15.png │ ├── img16.png │ ├── img17.png │ ├── img18.png │ ├── img19.png │ ├── img2.png │ ├── img20.png │ ├── img21.png │ ├── img22.png │ ├── img23.png │ ├── img24.png │ ├── img25.png │ ├── img26.png │ ├── img26a.png │ ├── img26b.png │ ├── img27.png │ ├── img28.png │ ├── img29.png │ ├── img2b.png │ ├── img3.png │ ├── img30.png │ ├── img31.png │ ├── img32.png │ ├── img33.png │ ├── img34.png │ ├── img35.png │ ├── img36.png │ ├── img37.png │ ├── img38.png │ ├── img39.png │ ├── img3b.png │ ├── img4.png │ ├── img5.png │ ├── img6.png │ ├── img7.png │ ├── img8.png │ ├── img8b.png │ └── img9.png ├── index.rst ├── install.rst ├── make.bat ├── technical_documentation.rst └── user_documentation.rst ├── editor.py ├── electrode.py ├── electrodeEditor.ui ├── electrode_models ├── AdTech-10x5_3.elecdef ├── AdTech-8x5_4.elecdef ├── AdTech-8x5_5.elecdef ├── AdTech-BF-10P-5.elecdef ├── AdTech-BF-11P-4.elecdef ├── AdTech-BF-13P-4.elecdef ├── AdTech-BF-9P-4.elecdef ├── AdTech-BF-9P-5.elecdef ├── AdTech-BF08-SP60.elecdef ├── AdTech-BF08-SP71.elecdef ├── AdTech-BF08R-SP51X-0C2.elecdef ├── AdTech-BF08R-SP51X_without2firstcontactsClose.elecdef ├── AdTech-BF09-SP60.elecdef ├── AdTech-BF09-SP61.elecdef ├── AdTech-ET-11P.elecdef ├── AdTech-ET-13P.elecdef ├── AdTech-ET-14P.elecdef ├── AdTech-ET-8P-53.elecdef ├── AdTech-ET-9P-53.elecdef ├── AdTech-ET-9P.elecdef ├── AdTech-SD010R-SP04-Freiburg.elecdef ├── AdTech-SD04R-SP05.elecdef ├── AdTech-SD04R-SP10.elecdef ├── AdTech-SD06R-SP05.elecdef ├── AdTech-SD06R-SP10.elecdef ├── AdTech-SD08R-SP04.elecdef ├── AdTech-SD08R-SP05.elecdef ├── AdTech-SD08R-SP10.elecdef ├── AdTech-SD10R-SP04-Freiburg.elecdef ├── AdTech-SD10R-SP04.elecdef ├── AdTech-SD10R-SP05.elecdef ├── AdTech-SD10R-SP10.elecdef ├── AdTech-SD12R-SP05.elecdef ├── AdTech-SD12R-SP10.elecdef ├── AdTech-SD14R-SP05.elecdef ├── AdTech-TBAg.elecdef ├── AdTech-oldMicro6contact6mm.elecdef ├── AdTech-oldMicro8contact6mm.elecdef ├── Alcis-18C40.elecdef ├── Alcis-2069-EPC-05C-35.elecdef ├── Alcis-2069-EPC-06E-20.elecdef ├── Alcis-2069-EPC-08C-35.elecdef ├── Alcis-2069-EPC-09E-20.elecdef ├── Alcis-2069-EPC-10C-35.elecdef ├── Alcis-2069-EPC-12C-35.elecdef ├── Alcis-2069-EPC-12E-20.elecdef ├── Alcis-2069-EPC-15C-35-3G-07.elecdef ├── Alcis-2069-EPC-15C-35-3G-11.elecdef ├── Alcis-2069-EPC-15C-35.elecdef ├── Alcis-2069-EPC-15E-20.elecdef ├── Alcis-2069-EPC-18C-35-3G-11.elecdef ├── Alcis-2069-EPC-18C-35.elecdef ├── Alcis-2069-EPC-18C-40.elecdef ├── Alcis-2069-EPC-18E-20.elecdef ├── Alcys-2069-EPC-15E-20.elecdef ├── Dixi-D08-05AM.elecdef ├── Dixi-D08-08AM.elecdef ├── Dixi-D08-10AM.elecdef ├── Dixi-D08-12AM.elecdef ├── Dixi-D08-15AM.elecdef ├── Dixi-D08-15BM.elecdef ├── Dixi-D08-15CM.elecdef ├── Dixi-D08-18AM.elecdef ├── Dixi-D08-18CM.elecdef ├── Medtronic_3389-long.elecdef ├── MontrealHomeMade.elecdef ├── PMT-D08-14A.elecdef ├── PMT-D08-16A.elecdef ├── PMT-D08-16B.elecdef ├── PMT_8Large_contacts.elecdef └── microwire.elecdef ├── electrodedisplaywidget.py ├── epilepsy-toolbox ├── epilepsy.png ├── epilepsy.py ├── hierarchies │ ├── brainvisa-3.1.0 │ │ ├── electrodes.py │ │ ├── images.py │ │ └── seeg.py │ ├── brainvisa-3.2.0 │ │ ├── electrodes.py │ │ ├── images.py │ │ ├── others.py │ │ └── seeg.py │ └── shared │ │ └── electrodes.py ├── initialization.py ├── processes │ └── category_documentation.minf ├── python │ └── epilepsy_configuration.py └── types │ └── epilepsy.py ├── externalprocesses.py ├── ftractTransfer.py ├── ftractTransfer.ui ├── generate_contact_colors.py ├── greendot.png ├── groupDisplay.py ├── groupDisplay.sh ├── groupPlots.ui ├── identity.trm ├── installIntoBrainvisa5.sh ├── labels ├── VepFreeSurferColorLut.txt ├── freesurfer_labels.txt ├── hcp_l0r200_labels.txt ├── lausanne125_labels.txt ├── lausanne250_labels.txt ├── lausanne33_labels.txt ├── lausanne500_labels.txt ├── lausanne60_labels.txt └── marsatlas_labels.txt ├── locateContacts.py ├── locateElectrodes.py ├── locateElectrodes.sh ├── locateElectrodes.ui ├── logoAnatomist.png ├── patientDataFilter.ui ├── patientdatafilterwidget.py ├── progressbar.py ├── readElecLocalCSVFile.py ├── readFreesurferLabelFile.py ├── readFunctionalTractography.py ├── readLabels.py ├── referentialconverter.py ├── scriptVep2IntranatCSV.py ├── templatewidget.py └── templatewidget.ui /.gitignore: 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