├── LG05.fasta.zip ├── README.md ├── images ├── LocalTrees.svg ├── LocalTrees_full.svg ├── aliview.png ├── beast.png ├── beauti1.png ├── beauti2.png ├── beauti3.png ├── beauti4.png ├── beauti5.png ├── beauti6.png ├── figtree1.png ├── figtree2.png ├── hypotheses.png ├── tracer1.png └── tracer2.png ├── results └── LocalTrees.out └── scripts ├── beauti.rb ├── constraints.xml ├── convert_to_newick.rb ├── generate_alignments.rb └── paint_chromosomes.rb /LG05.fasta.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IsmailM/Introgression-Tutorial/HEAD/LG05.fasta.zip -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/IsmailM/Introgression-Tutorial/HEAD/README.md -------------------------------------------------------------------------------- /images/LocalTrees.svg: 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