├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── FRmatch.Rproj ├── LICENSE ├── NAMESPACE ├── R ├── FRmatch.R ├── FRmatch_cell2cluster.R ├── FRtest.R ├── auxiliary.R ├── auxiliary_FRtest.R ├── check_data_object.R ├── data.R ├── get_values.R ├── make_data_object.R ├── normalization.R ├── other_matching_methods.R ├── plot_FRmatch.R ├── plot_FRmatch_cell2cluster.R ├── plot_MST.R ├── plot_bi_FRmatch.R ├── plot_clusterSize.R ├── plot_cluster_by_markers.R ├── plot_exprDist.R ├── plot_nonzero.R ├── predict_most_similar_cluster.R └── runShiny.R ├── README.md ├── data └── sce.example.rda ├── inst ├── data │ ├── sce-layer1-15clusters.rda │ └── sce-layer1-topNodes.rda └── shinyapp │ ├── app.R │ └── www │ └── JCVI-Logo-Inline-Black.png ├── man ├── FRmatch.Rd ├── FRmatch_cell2cluster.Rd ├── FRtest.Rd ├── check_data_object.Rd ├── get_values.Rd ├── make_data_object.Rd ├── normalization.Rd ├── plot_FRmatch.Rd ├── plot_FRmatch_cell2cluster.Rd ├── plot_MST.Rd ├── plot_bi_FRmatch.Rd ├── plot_clusterSize.Rd ├── plot_cluster_by_markers.Rd ├── plot_exprDist.Rd ├── plot_nonzero.Rd ├── predict_most_similar_cluster.Rd ├── runShiny.Rd └── sce.example.Rd └── vignettes ├── FRmatch-scheme-v2.png ├── FRmatch-sticker-2.png ├── FRmatch-vignette.R ├── FRmatch-vignette.Rmd └── naming-convention.png /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JCVenterInstitute/FRmatch/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JCVenterInstitute/FRmatch/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JCVenterInstitute/FRmatch/HEAD/DESCRIPTION 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