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 1 | # Public Bioinformatics Datasets
 2 | Publicly available dataset for bioinformatics and integrative -omics research (on-going)
 3 | 
 4 | ## Genomics
 5 | - [Exome Aggregation Consortium dataset](http://exac.broadinstitute.org/)  
 6 | - [1000 Genomes Project](http://www.1000genomes.org/data)  
 7 | - [Personal Genomes Project](http://www.personalgenomes.org/)  
 8 | - [HapMap Project](http://hapmap.ncbi.nlm.nih.gov/)  
 9 | - [NHLBI exome sequencing project](http://evs.gs.washington.edu/EVS)  
10 | 
11 | ## Transcriptomics
12 | - [Geuvadis RNA sequencing project](http://www.geuvadis.org/web/geuvadis/RNAseq-project)  
13 | → [Available in convenient RData format from the Leek lab](http://jtleek.com/data/)  
14 | - [GTEx](http://www.gtexportal.org/home/)
15 | - [ReCount](http://bowtie-bio.sourceforge.net/recount/)  
16 | - [Single Cell Analysis Program – Transcriptome Project](http://scap-t.org/)
17 | - [Stanford microarray database](http://smd.princeton.edu/)  
18 | 
19 | ## Epigenomics
20 | - [Epigenomics Roadmap](http://www.roadmapepigenomics.org/data/)
21 | 
22 | ## Clinical and Healthcare
23 | - [iDash data repository (has several datasets)](https://idash-data.ucsd.edu/community)  
24 | - [i2b2 NLP datasets](https://www.i2b2.org/NLP/DataSets/Main.php)  
25 | - [Medline](http://mbr.nlm.nih.gov/Download/)
26 | - [Surveillance, Epidemiology, and End Results (SEER) for cancer](http://seer.cancer.gov/resources/)
27 | - [MIMIC II](http://www.physionet.org/mimic2/)
28 | - [Healthcare Cost and Utilization Project (HCUP)](http://www.hcup-us.ahrq.gov/databases.jsp)
29 | - [National Health and Nutrition Examination Survey (NHANES)](http://www.cdc.gov/nchs/nhanes.htm)
30 | - [National Ambulatory Medical Care Survey (NAMCS/NHAMCS)](http://www.cdc.gov/nchs/ahcd.htm)
31 | - [Community Tracking Study](http://www.icpsr.umich.edu/icpsrweb/content/HMCA/community-tracking-study.html)
32 | - [National Health Interview Survey](http://www.cdc.gov/nchs/nhis.htm)
33 | 


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