├── BrainMorph ├── README.md └── infer_BrainMorph.py ├── L2R_LUMIR_Eval ├── Dockerfile ├── README.md ├── __pycache__ │ ├── digital_diffeomorphism.cpython-38.pyc │ ├── evaluation.cpython-311.pyc │ ├── evaluation.cpython-38.pyc │ └── utils.cpython-38.pyc ├── build.sh ├── digital_diffeomorphism.py ├── evaluation.py ├── export.sh ├── ground-truth │ ├── LUMIR_VAL_Landmark_evaluation_config.json │ └── LUMIR_VAL_Segmentation_evaluation_config.json ├── requirements.txt ├── surface_distance │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-38.pyc │ │ ├── lookup_tables.cpython-38.pyc │ │ └── metrics.cpython-38.pyc │ ├── lookup_tables.py │ └── metrics.py ├── test.sh └── utils.py ├── LICENSE ├── README.md ├── SyN (ATNs) ├── Infer_SyN.py └── README.md ├── SynthMorph ├── README.md └── infer_SynthMorph.py ├── Test_phase_submission ├── DockerImage_Template │ ├── Dockerfile │ ├── build.sh │ ├── export.sh │ ├── infer_script.py │ ├── pretrained_weights │ │ └── placeholder.txt │ ├── requirements.txt │ └── test.sh ├── DockerImage_TransMorph │ ├── Dockerfile │ ├── TransMorph.py │ ├── build.sh │ ├── configs_TransMorph.py │ ├── export.sh │ ├── infer_TransMorph.py │ ├── pretrained_weights │ │ └── placeholder.txt │ ├── requirements.txt │ └── test.sh └── README.md ├── TransMorph ├── data │ ├── __init__.py │ ├── data_utils.py │ ├── datasets.py │ ├── rand.py │ └── trans.py ├── infer_TransMorphTVF.py ├── losses.py ├── models │ ├── TransMorph.py │ ├── __init__.py │ └── configs_TransMorph.py ├── train_TransMorphTVF.py └── utils.py ├── VoxelMorph ├── data │ ├── __pycache__ │ │ └── datasets.cpython-38.pyc │ └── datasets.py ├── infer_VoxelMorph.py ├── losses.py ├── models.py ├── train_VoxelMorph.py └── utils.py ├── deedsBCV ├── README.md ├── deedsBCV0.cpp └── infer_LUMIR.py └── uniGradICON ├── README.md └── l2r_LUMIR_eval.py /BrainMorph/README.md: -------------------------------------------------------------------------------- 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