├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ └── test-coverage.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── assert.R ├── averageposterior.R ├── builders.R ├── imp-brms.R ├── marginalcoef.R ├── margins.R ├── prediction.R ├── rimplementation.R └── utils.R ├── README.md ├── _pkgdown.yml ├── codecov.yml ├── man ├── assertall.Rd ├── brmsmargins.Rd ├── bsummary.Rd ├── builders.Rd ├── dot-averagePosterior.Rd ├── dot-checktab.Rd ├── dot-extractlink.Rd ├── dot-links.Rd ├── dot-percent.Rd ├── integratemvn.Rd ├── integratere.Rd ├── is.random.Rd ├── lmcpp.Rd ├── marginalcoef.Rd ├── prediction.Rd ├── rowBootMeans.Rd └── tab2mat.Rd ├── src ├── .gitignore ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── integratemvn.cpp ├── integratemvn.h ├── integratere.cpp ├── lmcpp.cpp ├── lmcpp.h ├── rowbootmeans.cpp ├── tab2mat.cpp └── tab2mat.h ├── tests ├── testthat.R └── testthat │ ├── test-bsummary.R │ ├── test-builders.R │ ├── test-dot-checktab.R │ ├── test-dot-links.R │ ├── test-dot-percent.R │ ├── test-fixedeffects-bernoulli-margins.R │ ├── test-fixedeffects-beta-margins.R │ ├── test-fixedeffects-gamma-margins.R │ ├── test-integratemvn.R │ ├── test-marginalcoef-mixedlogit.R │ ├── test-marginalcoef-mixedpoisson.R │ ├── test-predict-mixedlogit.R │ ├── test-predict-mixedlogtrans.R │ ├── test-predict-mixedpoisson.R │ ├── test-rowbootmeans.R │ └── test-tab2mat.R └── vignettes ├── .gitignore ├── fixed-effects-marginaleffects.Rmd ├── fixed-effects-marginaleffects.Rmd.orig ├── location-scale-marginaleffects.Rmd ├── location-scale-marginaleffects.Rmd.orig ├── mixed-effects-marginaleffects.Rmd └── mixed-effects-marginaleffects.Rmd.orig /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.github/workflows/pkgdown.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/.github/workflows/pkgdown.yaml -------------------------------------------------------------------------------- /.github/workflows/test-coverage.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/.github/workflows/test-coverage.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | YEAR: 2021 2 | COPYRIGHT HOLDER: brmsmargins authors 3 | -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/LICENSE.md -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/RcppExports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/RcppExports.R -------------------------------------------------------------------------------- /R/assert.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/assert.R -------------------------------------------------------------------------------- /R/averageposterior.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/averageposterior.R -------------------------------------------------------------------------------- /R/builders.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/builders.R -------------------------------------------------------------------------------- /R/imp-brms.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/imp-brms.R -------------------------------------------------------------------------------- /R/marginalcoef.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/marginalcoef.R -------------------------------------------------------------------------------- /R/margins.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/margins.R -------------------------------------------------------------------------------- /R/prediction.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/prediction.R -------------------------------------------------------------------------------- /R/rimplementation.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/rimplementation.R -------------------------------------------------------------------------------- /R/utils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/R/utils.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/README.md -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /codecov.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/codecov.yml -------------------------------------------------------------------------------- /man/assertall.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/assertall.Rd -------------------------------------------------------------------------------- /man/brmsmargins.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/brmsmargins.Rd -------------------------------------------------------------------------------- /man/bsummary.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/bsummary.Rd -------------------------------------------------------------------------------- /man/builders.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/builders.Rd -------------------------------------------------------------------------------- /man/dot-averagePosterior.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/dot-averagePosterior.Rd -------------------------------------------------------------------------------- /man/dot-checktab.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/dot-checktab.Rd -------------------------------------------------------------------------------- /man/dot-extractlink.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/dot-extractlink.Rd -------------------------------------------------------------------------------- /man/dot-links.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/dot-links.Rd -------------------------------------------------------------------------------- /man/dot-percent.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/dot-percent.Rd -------------------------------------------------------------------------------- /man/integratemvn.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/integratemvn.Rd -------------------------------------------------------------------------------- /man/integratere.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/integratere.Rd -------------------------------------------------------------------------------- /man/is.random.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/is.random.Rd -------------------------------------------------------------------------------- /man/lmcpp.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/lmcpp.Rd -------------------------------------------------------------------------------- /man/marginalcoef.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/marginalcoef.Rd -------------------------------------------------------------------------------- /man/prediction.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/prediction.Rd -------------------------------------------------------------------------------- /man/rowBootMeans.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/rowBootMeans.Rd -------------------------------------------------------------------------------- /man/tab2mat.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/man/tab2mat.Rd -------------------------------------------------------------------------------- /src/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/.gitignore -------------------------------------------------------------------------------- /src/Makevars: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/Makevars -------------------------------------------------------------------------------- /src/Makevars.win: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/Makevars.win -------------------------------------------------------------------------------- /src/RcppExports.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/RcppExports.cpp -------------------------------------------------------------------------------- /src/integratemvn.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/integratemvn.cpp -------------------------------------------------------------------------------- /src/integratemvn.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/integratemvn.h -------------------------------------------------------------------------------- /src/integratere.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/integratere.cpp -------------------------------------------------------------------------------- /src/lmcpp.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/lmcpp.cpp -------------------------------------------------------------------------------- /src/lmcpp.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/lmcpp.h -------------------------------------------------------------------------------- /src/rowbootmeans.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/rowbootmeans.cpp -------------------------------------------------------------------------------- /src/tab2mat.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/tab2mat.cpp -------------------------------------------------------------------------------- /src/tab2mat.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/src/tab2mat.h -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/test-bsummary.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-bsummary.R -------------------------------------------------------------------------------- /tests/testthat/test-builders.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-builders.R -------------------------------------------------------------------------------- /tests/testthat/test-dot-checktab.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-dot-checktab.R -------------------------------------------------------------------------------- /tests/testthat/test-dot-links.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-dot-links.R -------------------------------------------------------------------------------- /tests/testthat/test-dot-percent.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-dot-percent.R -------------------------------------------------------------------------------- /tests/testthat/test-fixedeffects-bernoulli-margins.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-fixedeffects-bernoulli-margins.R -------------------------------------------------------------------------------- /tests/testthat/test-fixedeffects-beta-margins.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-fixedeffects-beta-margins.R -------------------------------------------------------------------------------- /tests/testthat/test-fixedeffects-gamma-margins.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-fixedeffects-gamma-margins.R -------------------------------------------------------------------------------- /tests/testthat/test-integratemvn.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-integratemvn.R -------------------------------------------------------------------------------- /tests/testthat/test-marginalcoef-mixedlogit.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-marginalcoef-mixedlogit.R -------------------------------------------------------------------------------- /tests/testthat/test-marginalcoef-mixedpoisson.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-marginalcoef-mixedpoisson.R -------------------------------------------------------------------------------- /tests/testthat/test-predict-mixedlogit.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-predict-mixedlogit.R -------------------------------------------------------------------------------- /tests/testthat/test-predict-mixedlogtrans.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-predict-mixedlogtrans.R -------------------------------------------------------------------------------- /tests/testthat/test-predict-mixedpoisson.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-predict-mixedpoisson.R -------------------------------------------------------------------------------- /tests/testthat/test-rowbootmeans.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-rowbootmeans.R -------------------------------------------------------------------------------- /tests/testthat/test-tab2mat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/tests/testthat/test-tab2mat.R -------------------------------------------------------------------------------- /vignettes/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | *.R 3 | -------------------------------------------------------------------------------- /vignettes/fixed-effects-marginaleffects.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/vignettes/fixed-effects-marginaleffects.Rmd -------------------------------------------------------------------------------- /vignettes/fixed-effects-marginaleffects.Rmd.orig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/vignettes/fixed-effects-marginaleffects.Rmd.orig -------------------------------------------------------------------------------- /vignettes/location-scale-marginaleffects.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/vignettes/location-scale-marginaleffects.Rmd -------------------------------------------------------------------------------- /vignettes/location-scale-marginaleffects.Rmd.orig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/vignettes/location-scale-marginaleffects.Rmd.orig -------------------------------------------------------------------------------- /vignettes/mixed-effects-marginaleffects.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/vignettes/mixed-effects-marginaleffects.Rmd -------------------------------------------------------------------------------- /vignettes/mixed-effects-marginaleffects.Rmd.orig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JWiley/brmsmargins/HEAD/vignettes/mixed-effects-marginaleffects.Rmd.orig --------------------------------------------------------------------------------