├── A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics in bacterial strains.pdf ├── AMR_Prediction_Jupyter_Notebook.ipynb ├── Data ├── aminoglycoside_to_predict_SE.csv ├── amr_ast_clindamycin_CJ.csv ├── amr_ast_doripenem_EcS.csv ├── amr_ast_doripenem_KN.csv ├── amr_ast_doripenem_PA.csv ├── amr_ast_ertapenem_EcS.csv ├── amr_ast_ertapenem_KN.csv ├── amr_ast_imipenem_EcS.csv ├── amr_ast_imipenem_KN.csv ├── amr_ast_kanamycin_SE.csv ├── amr_ast_meropenem_EcS.csv ├── amr_ast_meropenem_KN.csv ├── amr_ast_streptomycin_SE.csv ├── carbapenem_to_predict_EcS.csv ├── carbapenem_to_predict_KN.csv ├── carbapenem_to_predict_PA.csv └── clindamycin_to_predict_CJ.csv └── README.md /A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics in bacterial strains.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics in bacterial strains.pdf -------------------------------------------------------------------------------- /AMR_Prediction_Jupyter_Notebook.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/AMR_Prediction_Jupyter_Notebook.ipynb -------------------------------------------------------------------------------- /Data/aminoglycoside_to_predict_SE.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/aminoglycoside_to_predict_SE.csv -------------------------------------------------------------------------------- /Data/amr_ast_clindamycin_CJ.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_clindamycin_CJ.csv -------------------------------------------------------------------------------- /Data/amr_ast_doripenem_EcS.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_doripenem_EcS.csv -------------------------------------------------------------------------------- /Data/amr_ast_doripenem_KN.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_doripenem_KN.csv -------------------------------------------------------------------------------- /Data/amr_ast_doripenem_PA.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_doripenem_PA.csv -------------------------------------------------------------------------------- /Data/amr_ast_ertapenem_EcS.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_ertapenem_EcS.csv -------------------------------------------------------------------------------- /Data/amr_ast_ertapenem_KN.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_ertapenem_KN.csv -------------------------------------------------------------------------------- /Data/amr_ast_imipenem_EcS.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_imipenem_EcS.csv -------------------------------------------------------------------------------- /Data/amr_ast_imipenem_KN.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_imipenem_KN.csv -------------------------------------------------------------------------------- /Data/amr_ast_kanamycin_SE.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_kanamycin_SE.csv -------------------------------------------------------------------------------- /Data/amr_ast_meropenem_EcS.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_meropenem_EcS.csv -------------------------------------------------------------------------------- /Data/amr_ast_meropenem_KN.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_meropenem_KN.csv -------------------------------------------------------------------------------- /Data/amr_ast_streptomycin_SE.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/amr_ast_streptomycin_SE.csv -------------------------------------------------------------------------------- /Data/carbapenem_to_predict_EcS.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/carbapenem_to_predict_EcS.csv -------------------------------------------------------------------------------- /Data/carbapenem_to_predict_KN.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/carbapenem_to_predict_KN.csv -------------------------------------------------------------------------------- /Data/carbapenem_to_predict_PA.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/carbapenem_to_predict_PA.csv -------------------------------------------------------------------------------- /Data/clindamycin_to_predict_CJ.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/Data/clindamycin_to_predict_CJ.csv -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Janaksunuwar/AMR_prediction/HEAD/README.md --------------------------------------------------------------------------------