├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── feature_request.md │ └── general-question.md └── workflows │ └── maven.yml ├── .gitignore ├── LICENSE.md ├── LICENSES-DEPENDENCIES.txt ├── README.md ├── docs ├── Development.md ├── H5JFileFormat.md ├── ReleaseProcess.md ├── SamplePipeline.md ├── UserManual.md ├── distcorrection_1.png ├── distcorrection_2.png └── screenshot.png ├── maven-version-rules.xml ├── modules ├── AdministrationGUI │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── admin │ │ │ ├── ActionPanel.java │ │ │ ├── AdministrationTopComponent.java │ │ │ ├── DatabaseCleanupPanel.java │ │ │ ├── GroupDetailsPanel.java │ │ │ ├── GroupManagementPanel.java │ │ │ ├── NewGroupPanel.java │ │ │ ├── RetrieveLogsPanel.java │ │ │ ├── TableButton.java │ │ │ ├── TableSelectBox.java │ │ │ ├── TitlePanel.java │ │ │ ├── UserDetailsPanel.java │ │ │ ├── UserManagementPanel.java │ │ │ └── nb_actions │ │ │ ├── OpenAdminPanelAction.java │ │ │ └── OpenAdminPanelActionBuilder.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── admin │ │ ├── Bundle.properties │ │ └── images │ │ ├── clean.png │ │ ├── group.png │ │ ├── group16.png │ │ ├── logs.png │ │ └── user.png ├── ColorDepthSearch │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── colordepth │ │ │ ├── actions │ │ │ ├── AddToColorDepthSearchAction.java │ │ │ ├── CopyBodyIdToClipboardAction.java │ │ │ └── CreateColorDepthMaskAction.java │ │ │ ├── gui │ │ │ ├── AddToResultsAction.java │ │ │ ├── ColorDepthAlignmentSpaceNode.java │ │ │ ├── ColorDepthHud.java │ │ │ ├── ColorDepthLibrariesNode.java │ │ │ ├── ColorDepthLibraryNode.java │ │ │ ├── ColorDepthListViewerType.java │ │ │ ├── ColorDepthMatchContextMenu.java │ │ │ ├── ColorDepthMatchEditSelectionEvent.java │ │ │ ├── ColorDepthMatchSelectionEvent.java │ │ │ ├── ColorDepthNodesProvider.java │ │ │ ├── ColorDepthObjectHandler.java │ │ │ ├── ColorDepthResultIconGridViewer.java │ │ │ ├── ColorDepthResultIconGridViewerState.java │ │ │ ├── ColorDepthResultImageModel.java │ │ │ ├── ColorDepthResultPage.java │ │ │ ├── ColorDepthResultPanel.java │ │ │ ├── ColorDepthResultTableViewer.java │ │ │ ├── ColorDepthResultTableViewerState.java │ │ │ ├── ColorDepthSearchDialog.java │ │ │ ├── ColorDepthSearchEditorPanel.java │ │ │ ├── ColorDepthSearchEditorState.java │ │ │ ├── ColorDepthSearchNode.java │ │ │ ├── ColorDepthSearchOptionsPanel.java │ │ │ ├── ColorDepthSearchResults.java │ │ │ ├── ColorDepthSearchesNode.java │ │ │ ├── CreateMaskFromImageAction.java │ │ │ ├── CreateMaskFromSampleAction.java │ │ │ ├── MaskContextMenu.java │ │ │ ├── MaskCreationDialog.java │ │ │ ├── MaskUtils.java │ │ │ ├── NewMaskAction.java │ │ │ ├── NewMaskActionListener.java │ │ │ ├── NewSearchAction.java │ │ │ ├── NewSearchActionListener.java │ │ │ └── SplitHalfContextMenu.java │ │ │ ├── model │ │ │ └── ColorDepthAlignmentSpace.java │ │ │ └── nodes │ │ │ ├── EMDataSetNode.java │ │ │ ├── EMDataSetObjectHandler.java │ │ │ ├── EMDataSetsNode.java │ │ │ └── EMDataSetsNodeProvider.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── colordepth │ │ └── Bundle.properties ├── CommonGUI │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── common │ │ │ ├── actions │ │ │ ├── BaseContextualNodeAction.java │ │ │ ├── BaseContextualPopupAction.java │ │ │ ├── ContextualLabelAction.java │ │ │ ├── CopyGUIDToClipboardAction.java │ │ │ ├── CopyNameToClipboardAction.java │ │ │ ├── CopyToClipboardAction.java │ │ │ ├── NodePresenterAction.java │ │ │ └── PopupLabelAction.java │ │ │ ├── flavors │ │ │ ├── DomainObjectFlavor.java │ │ │ ├── DomainObjectNodeFlavor.java │ │ │ ├── OntologyTermFlavor.java │ │ │ └── OntologyTermNodeFlavor.java │ │ │ ├── gui │ │ │ ├── dialogs │ │ │ │ ├── ConnectDialog.java │ │ │ │ ├── LoginDialog.java │ │ │ │ ├── MemoryCheckDialog.java │ │ │ │ ├── ModalDialog.java │ │ │ │ ├── ReleaseNotesDialog.java │ │ │ │ ├── RunAsUserDialog.java │ │ │ │ └── SingletonErrorDialog.java │ │ │ ├── editor │ │ │ │ ├── DomainObjectEditor.java │ │ │ │ ├── DomainObjectEditorState.java │ │ │ │ ├── DomainObjectNodeEditor.java │ │ │ │ ├── Editor.java │ │ │ │ ├── ParentNodeSelectionEditor.java │ │ │ │ ├── SampleResultEditor.java │ │ │ │ └── ViewerContextProvider.java │ │ │ ├── lifecycle │ │ │ │ └── ShowingHook.java │ │ │ ├── listview │ │ │ │ ├── ListViewer.java │ │ │ │ ├── ListViewerActionListener.java │ │ │ │ ├── ListViewerClassProvider.java │ │ │ │ └── ListViewerState.java │ │ │ ├── model │ │ │ │ ├── DomainObjectImageModel.java │ │ │ │ ├── SampleDecorator.java │ │ │ │ └── SampleResultModel.java │ │ │ ├── options │ │ │ │ ├── ApplicationOptionsPanel.java │ │ │ │ ├── ApplicationOptionsPanelController.java │ │ │ │ └── package-info.java │ │ │ ├── presets │ │ │ │ ├── ManagePresetsDialog.java │ │ │ │ ├── Preset.java │ │ │ │ ├── PresetManager.java │ │ │ │ └── PresetSelectionButton.java │ │ │ ├── progress │ │ │ │ └── SharedProgressBarUI.java │ │ │ ├── support │ │ │ │ ├── AbstractChooser.java │ │ │ │ ├── AnnotationView.java │ │ │ │ ├── ComboMembershipListPanel.java │ │ │ │ ├── DataSetComboBoxRenderer.java │ │ │ │ ├── Debouncer.java │ │ │ │ ├── DesktopApi.java │ │ │ │ ├── ExpandedTreeState.java │ │ │ │ ├── GridLayout2.java │ │ │ │ ├── GroupedKeyValuePanel.java │ │ │ │ ├── Icons.java │ │ │ │ ├── JScrollMenu.java │ │ │ │ ├── JScrollPopupMenu.java │ │ │ │ ├── MembershipListPanel.java │ │ │ │ ├── MissingIcon.java │ │ │ │ ├── MouseForwarder.java │ │ │ │ ├── MouseHandler.java │ │ │ │ ├── PopupContextMenu.java │ │ │ │ ├── PreferenceSupport.java │ │ │ │ ├── ScrollablePanel.java │ │ │ │ ├── SearchProvider.java │ │ │ │ ├── SmartTextField.java │ │ │ │ ├── StateDrivenIconToggleButton.java │ │ │ │ ├── StretchIcon.java │ │ │ │ ├── StringMemberListPanel.java │ │ │ │ ├── SubjectComboBox.java │ │ │ │ ├── SubjectComboBoxRenderer.java │ │ │ │ ├── TagCloudPanel.java │ │ │ │ ├── TemplateEditorTextbox.java │ │ │ │ ├── ViewerToolbar.java │ │ │ │ ├── WindowLocator.java │ │ │ │ ├── WrapLayout.java │ │ │ │ ├── YamlFileFilter.java │ │ │ │ ├── buttons │ │ │ │ │ ├── DropDownButton.java │ │ │ │ │ └── IconWithArrow.java │ │ │ │ └── panels │ │ │ │ │ ├── MemorySettingPanel.java │ │ │ │ │ └── ScrollablePanel.java │ │ │ ├── table │ │ │ │ ├── DynamicColumn.java │ │ │ │ ├── DynamicRow.java │ │ │ │ ├── DynamicTable.java │ │ │ │ ├── LargeFontTable.java │ │ │ │ └── ProgressCellRenderer.java │ │ │ └── util │ │ │ │ ├── DomainUIUtils.java │ │ │ │ └── UIUtils.java │ │ │ ├── logging │ │ │ ├── EDTExceptionInterceptor.java │ │ │ └── ErrorPopups.java │ │ │ ├── nb_action │ │ │ ├── AdminItemsAction.java │ │ │ ├── ConnectMenuAction.java │ │ │ ├── ReleaseNotesAction.java │ │ │ ├── ReportABugMenuAction.java │ │ │ ├── RunAsMenuAction.java │ │ │ ├── RunAsMenuActionBuilder.java │ │ │ ├── SetLoginAction.java │ │ │ ├── TestExceptionsActionBuilder.java │ │ │ ├── UserManualMenuAction.java │ │ │ └── WebsiteMenuAction.java │ │ │ ├── nodes │ │ │ ├── AbstractDomainObjectNode.java │ │ │ ├── EmptyNode.java │ │ │ ├── ExplorerRootNode.java │ │ │ ├── ExplorerRootNodeChildFactory.java │ │ │ ├── FilterNode.java │ │ │ ├── GroupedFolderNode.java │ │ │ ├── Has2dRepresentation.java │ │ │ ├── InternalNode.java │ │ │ ├── NodeUtils.java │ │ │ ├── RecentlyOpenedItemsNode.java │ │ │ ├── RecentlyOpenedNodeProvider.java │ │ │ ├── TreeNodeChildFactory.java │ │ │ ├── TreeNodeNode.java │ │ │ ├── UserViewConfiguration.java │ │ │ ├── UserViewRootNode.java │ │ │ ├── UserViewTreeNodeNode.java │ │ │ └── WorkspaceNode.java │ │ │ └── services │ │ │ ├── ConsoleErrorHandler.java │ │ │ └── ConsoleFrameModel.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ ├── images │ │ ├── AdminGroup.png │ │ ├── AdminUser.png │ │ ├── Green_check.png │ │ ├── OrthogonalMode.png │ │ ├── ParentAnchor16.png │ │ ├── SkeletonAnchor16.png │ │ ├── SkeletonAnchor8.png │ │ ├── ZViewMode.png │ │ ├── add.png │ │ ├── ano_large.png │ │ ├── ano_small.png │ │ ├── arrow_back.gif │ │ ├── arrow_double_left.png │ │ ├── arrow_double_right.png │ │ ├── arrow_forward.gif │ │ ├── arrow_left.png │ │ ├── arrow_refresh.png │ │ ├── arrow_right.png │ │ ├── axes_off.png │ │ ├── axes_on.png │ │ ├── background_black.png │ │ ├── background_white.png │ │ ├── beaker.png │ │ ├── block.png │ │ ├── block_large.png │ │ ├── border_dark_normal.png │ │ ├── border_dark_selected.png │ │ ├── border_normal.png │ │ ├── border_selected.png │ │ ├── brain.png │ │ ├── brick.png │ │ ├── brick_grey.png │ │ ├── bricks.png │ │ ├── bright_color_save.png │ │ ├── bullet_error.png │ │ ├── button_ok_16x16.png │ │ ├── cancel.png │ │ ├── cart.png │ │ ├── cart_edit.png │ │ ├── cart_go.png │ │ ├── cart_medium.png │ │ ├── center_crosshair.png │ │ ├── chevron-collapse-icon.png │ │ ├── chevron-expand-icon.png │ │ ├── close.png │ │ ├── close_red.png │ │ ├── cog.png │ │ ├── cog_medium.png │ │ ├── cog_small.gif │ │ ├── cog_small_anim.gif │ │ ├── cog_small_anim_orange.gif │ │ ├── collapse_all.png │ │ ├── color_depth_brain.png │ │ ├── color_drive_go.png │ │ ├── computer.png │ │ ├── computer_bw.png │ │ ├── computer_go.png │ │ ├── control_eject_blue.png │ │ ├── control_end_blue.png │ │ ├── control_fastforward_blue.png │ │ ├── control_pause_blue.png │ │ ├── control_play_blue.png │ │ ├── control_rewind_blue.png │ │ ├── control_start_blue.png │ │ ├── control_stop_blue.png │ │ ├── cross.png │ │ ├── crosshair.png │ │ ├── database.png │ │ ├── database_400.png │ │ ├── decorator_connect.png │ │ ├── decorator_disconnect.png │ │ ├── decorator_trash.png │ │ ├── delete.png │ │ ├── digits_df2.png │ │ ├── dim_color_save.png │ │ ├── dna2Animation_trans.gif │ │ ├── dna2_trans.gif │ │ ├── drive_add.png │ │ ├── drive_go.png │ │ ├── drive_magnify.png │ │ ├── drop-folder-blue-icon.png │ │ ├── drop-folder-graphite-icon.png │ │ ├── drop-folder-white-icon-large.png │ │ ├── drop-folder-white-icon.png │ │ ├── error.png │ │ ├── error_large.png │ │ ├── expand_all.png │ │ ├── fiji.png │ │ ├── fiji_16.png │ │ ├── file_error.png │ │ ├── file_large.png │ │ ├── file_lock.png │ │ ├── file_missing.png │ │ ├── find.png │ │ ├── fly_progress.gif │ │ ├── fly_start.gif │ │ ├── flylight_transparent_no_shadow.png │ │ ├── flyscope.jpg │ │ ├── folder-black-icon.png │ │ ├── folder-blue-icon.png │ │ ├── folder-graphite-icon.png │ │ ├── folder-gray-icon.png │ │ ├── folder-green-icon.png │ │ ├── folder-orange-icon.png │ │ ├── folder-purple-icon.png │ │ ├── folder-red-icon.png │ │ ├── folder-white-icon.png │ │ ├── folder-yellow-icon.png │ │ ├── folder.png │ │ ├── folder_add.png │ │ ├── folder_blue.png │ │ ├── folder_blue_database.png │ │ ├── folder_blue_key.png │ │ ├── folder_blue_user.png │ │ ├── folder_brick.png │ │ ├── folder_database.png │ │ ├── folder_error.png │ │ ├── folder_explore.png │ │ ├── folder_file_large.png │ │ ├── folder_files_large.png │ │ ├── folder_files_large.xcf │ │ ├── folder_go.png │ │ ├── folder_graphite_palette.png │ │ ├── folder_graphite_palette_large.png │ │ ├── folder_green.png │ │ ├── folder_icons.png │ │ ├── folder_image.png │ │ ├── folder_key.png │ │ ├── folder_large.png │ │ ├── folder_large.xcf │ │ ├── folder_open.png │ │ ├── folder_open_page.png │ │ ├── folder_open_page_white.png │ │ ├── folder_page.png │ │ ├── folder_palette.png │ │ ├── folder_picture.png │ │ ├── folder_purple.png │ │ ├── folder_red.png │ │ ├── folder_star.png │ │ ├── folder_user.png │ │ ├── folders_explorer_medium.png │ │ ├── fruit_fly.png │ │ ├── fruit_fly_small.png │ │ ├── fruit_fly_small_17.png │ │ ├── gear_large.png │ │ ├── grab_closed.png │ │ ├── grab_opened.png │ │ ├── group.png │ │ ├── group_edit.png │ │ ├── group_gear.png │ │ ├── image.png │ │ ├── images-white.png │ │ ├── images.png │ │ ├── info.png │ │ ├── information.png │ │ ├── intersect.png │ │ ├── invert.png │ │ ├── jet_icon.png │ │ ├── keyboard_add.png │ │ ├── link.png │ │ ├── link_break.png │ │ ├── loader.gif │ │ ├── magnifier.png │ │ ├── magnify_glass.png │ │ ├── magnify_minus.png │ │ ├── magnify_minus_cursor.png │ │ ├── magnify_plus.png │ │ ├── magnify_plus_cursor.png │ │ ├── map-icon-32.png │ │ ├── masked_drive_go.png │ │ ├── matrix.png │ │ ├── microscope_400.png │ │ ├── monitor.png │ │ ├── monitor_large.png │ │ ├── mouse_left.png │ │ ├── mouse_scroll.png │ │ ├── movie.png │ │ ├── nib.png │ │ ├── nib_plus.png │ │ ├── non_selected_black.png │ │ ├── non_selected_dim.png │ │ ├── open_action.png │ │ ├── package.png │ │ ├── page.png │ │ ├── page_add.png │ │ ├── page_copy.png │ │ ├── page_go.png │ │ ├── page_white.png │ │ ├── page_white_code.png │ │ ├── page_white_edit.png │ │ ├── page_white_go.png │ │ ├── page_white_stack.png │ │ ├── page_white_text.png │ │ ├── palette.png │ │ ├── parent.gif │ │ ├── path-blue.png │ │ ├── path.png │ │ ├── plugin.png │ │ ├── properties.png │ │ ├── properties_large.png │ │ ├── question_block_large.png │ │ ├── refresh.png │ │ ├── refresh_spin.gif │ │ ├── refresh_static.gif │ │ ├── resultset_next.png │ │ ├── resultset_previous.png │ │ ├── script.png │ │ ├── script_add.png │ │ ├── script_edit.png │ │ ├── search-blue-icon.png │ │ ├── search-white-icon.png │ │ ├── search-yellow-icon.png │ │ ├── search_large.png │ │ ├── set.png │ │ ├── shape_group.png │ │ ├── shape_handles.png │ │ ├── sites-folder-blue-icon.png │ │ ├── sites-folder-white-icon-large.png │ │ ├── sites-folder-white-icon.png │ │ ├── sort_descending.png │ │ ├── spinner.gif │ │ ├── split_ad.png │ │ ├── split_dbd.png │ │ ├── swc_large.png │ │ ├── swc_small.png │ │ ├── table.png │ │ ├── table_save.png │ │ ├── text_smallcaps.png │ │ ├── user-folder-blue-icon.png │ │ ├── user-folder-white-icon.png │ │ ├── user.png │ │ ├── user_add.png │ │ ├── user_bw.png │ │ ├── v3d_16x16x32.png │ │ ├── v3d_32x32x32.png │ │ ├── v3d_48x48x32.png │ │ ├── vvd16.svg.png │ │ ├── white-ball-icone-6188-32.png │ │ ├── workspace.png │ │ ├── workspace_large.png │ │ ├── workstationStatus.gif │ │ ├── workstationStatusAnimation.gif │ │ ├── workstation_32_icon.png │ │ ├── workstation_logo_white.png │ │ ├── workstation_splash_screen_grey.png │ │ ├── z_stack.png │ │ ├── z_stack_down.png │ │ ├── z_stack_down_fast.png │ │ ├── z_stack_up.png │ │ ├── z_stack_up_fast.png │ │ └── zoom.png │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── common │ │ ├── gui │ │ ├── Bundle.properties │ │ ├── Modes │ │ │ ├── appExplorerBtm.wsmode │ │ │ ├── appExplorerBtm │ │ │ │ └── DomainInspectorTopComponent.wstcref │ │ │ ├── editor.wsmode │ │ │ ├── editor2.wsmode │ │ │ ├── editor3.wsmode │ │ │ ├── explorer.wsmode │ │ │ ├── explorer │ │ │ │ └── DomainExplorerTopComponent.wstcref │ │ │ ├── rightSlidingSide.wsmode │ │ │ └── rightSlidingSide │ │ │ │ └── ProgressTopComponent.wstcref │ │ ├── layer.xml │ │ └── options │ │ │ └── ApplicationOptionsPanel.form │ │ └── release_notes │ │ ├── curr_release.txt │ │ └── prev_releases.txt ├── CommonLibraries │ ├── pom.xml │ └── src │ │ └── main │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ ├── META-INF │ │ └── services │ │ │ └── javax.xml.ws.spi.Provider │ │ ├── commons-logging.properties │ │ ├── log4j.properties │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── wrapper │ │ └── Bundle.properties ├── Core │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ ├── it │ │ │ │ ├── FlyWorkstation │ │ │ │ │ └── ws │ │ │ │ │ │ ├── ConsoleDataService.java │ │ │ │ │ │ └── ConsoleObserver.java │ │ │ │ └── workstation │ │ │ │ │ └── gui │ │ │ │ │ └── framework │ │ │ │ │ └── console │ │ │ │ │ └── BrowserPosition.java │ │ │ │ └── workstation │ │ │ │ └── core │ │ │ │ ├── actions │ │ │ │ ├── Action.java │ │ │ │ ├── ContextualNodeAction.java │ │ │ │ ├── ContextualNodeActionTracker.java │ │ │ │ ├── ContextualNodeActionUtils.java │ │ │ │ ├── NodeContext.java │ │ │ │ ├── PopupMenuGenerator.java │ │ │ │ ├── ViewerContext.java │ │ │ │ └── ViewerContextReceiver.java │ │ │ │ ├── activity_logging │ │ │ │ └── ActivityLogHelper.java │ │ │ │ ├── api │ │ │ │ ├── AccessManager.java │ │ │ │ ├── ClientDomainUtils.java │ │ │ │ ├── ConnectionMgr.java │ │ │ │ ├── DomainMgr.java │ │ │ │ ├── DomainMgrPreferenceModel.java │ │ │ │ ├── DomainModel.java │ │ │ │ ├── FileMgr.java │ │ │ │ ├── LocalCacheMgr.java │ │ │ │ ├── LocalPreferenceMgr.java │ │ │ │ ├── ServiceMgr.java │ │ │ │ ├── SessionMgr.java │ │ │ │ ├── StateMgr.java │ │ │ │ ├── exceptions │ │ │ │ │ ├── AuthenticationException.java │ │ │ │ │ ├── ConnectionStatusException.java │ │ │ │ │ ├── FatalCommError.java │ │ │ │ │ ├── RemoteServiceException.java │ │ │ │ │ ├── ServiceException.java │ │ │ │ │ └── SystemError.java │ │ │ │ ├── facade │ │ │ │ │ ├── impl │ │ │ │ │ │ ├── ejb │ │ │ │ │ │ │ ├── EJBFactory.java │ │ │ │ │ │ │ └── LegacyFacadeImpl.java │ │ │ │ │ │ └── rest │ │ │ │ │ │ │ ├── AsyncServiceFacadeImpl.java │ │ │ │ │ │ │ ├── DomainFacadeImpl.java │ │ │ │ │ │ │ ├── OntologyFacadeImpl.java │ │ │ │ │ │ │ ├── SampleFacadeImpl.java │ │ │ │ │ │ │ ├── SubjectFacadeImpl.java │ │ │ │ │ │ │ └── WorkspaceFacadeImpl.java │ │ │ │ │ └── interfaces │ │ │ │ │ │ ├── AsyncServiceFacade.java │ │ │ │ │ │ ├── DomainFacade.java │ │ │ │ │ │ ├── LegacyFacade.java │ │ │ │ │ │ ├── OntologyFacade.java │ │ │ │ │ │ ├── SampleFacade.java │ │ │ │ │ │ ├── SubjectFacade.java │ │ │ │ │ │ └── WorkspaceFacade.java │ │ │ │ ├── http │ │ │ │ │ ├── CustomLoggingFilter.java │ │ │ │ │ ├── HttpClientManager.java │ │ │ │ │ ├── HttpClientProxy.java │ │ │ │ │ ├── HttpServiceUtils.java │ │ │ │ │ ├── RESTClientBase.java │ │ │ │ │ └── RestJsonClientManager.java │ │ │ │ ├── lifecycle │ │ │ │ │ ├── AutoUpdater.java │ │ │ │ │ ├── ConsoleState.java │ │ │ │ │ ├── GracefulBrick.java │ │ │ │ │ ├── Shutdown.java │ │ │ │ │ └── Startup.java │ │ │ │ ├── services │ │ │ │ │ ├── BrowserActivityLoggingService.java │ │ │ │ │ ├── CoreFileAccessController.java │ │ │ │ │ └── LocalPreferenceSettingsModel.java │ │ │ │ ├── state │ │ │ │ │ └── UserColorMapping.java │ │ │ │ └── web │ │ │ │ │ ├── AsyncServiceClient.java │ │ │ │ │ ├── AuthServiceClient.java │ │ │ │ │ ├── JadeServiceClient.java │ │ │ │ │ └── SageRestClient.java │ │ │ │ ├── events │ │ │ │ ├── Events.java │ │ │ │ ├── lifecycle │ │ │ │ │ ├── ApplicationClosing.java │ │ │ │ │ ├── ApplicationOpening.java │ │ │ │ │ ├── ConnectionEvent.java │ │ │ │ │ ├── ConsolePropsLoaded.java │ │ │ │ │ ├── LoginEvent.java │ │ │ │ │ ├── SessionEndEvent.java │ │ │ │ │ ├── SessionEvent.java │ │ │ │ │ └── SessionStartEvent.java │ │ │ │ ├── model │ │ │ │ │ ├── DomainObjectAnnotationChangeEvent.java │ │ │ │ │ ├── DomainObjectChangeEvent.java │ │ │ │ │ ├── DomainObjectCreateEvent.java │ │ │ │ │ ├── DomainObjectEvent.java │ │ │ │ │ ├── DomainObjectInvalidationEvent.java │ │ │ │ │ ├── DomainObjectRemoveEvent.java │ │ │ │ │ └── PreferenceChangeEvent.java │ │ │ │ ├── prefs │ │ │ │ │ └── LocalPreferenceChanged.java │ │ │ │ ├── selection │ │ │ │ │ ├── ChildPickingSupport.java │ │ │ │ │ ├── ChildSelectionModel.java │ │ │ │ │ ├── ChildSelectionSupport.java │ │ │ │ │ ├── DomainObjectEditSelectionEvent.java │ │ │ │ │ ├── DomainObjectEditSelectionModel.java │ │ │ │ │ ├── DomainObjectSelectionEvent.java │ │ │ │ │ ├── DomainObjectSelectionModel.java │ │ │ │ │ ├── DomainObjectSelectionSupport.java │ │ │ │ │ ├── GlobalDomainObjectSelectionModel.java │ │ │ │ │ ├── ObjectSelectionEvent.java │ │ │ │ │ ├── OntologySelectionEvent.java │ │ │ │ │ ├── SelectionModel.java │ │ │ │ │ └── ViewerContextChangeEvent.java │ │ │ │ └── workers │ │ │ │ │ ├── WorkerChangedEvent.java │ │ │ │ │ ├── WorkerEndedEvent.java │ │ │ │ │ ├── WorkerEvent.java │ │ │ │ │ └── WorkerStartedEvent.java │ │ │ │ ├── filecache │ │ │ │ ├── AbstractStorageClient.java │ │ │ │ ├── AbstractWebDav.java │ │ │ │ ├── AgentStorageClient.java │ │ │ │ ├── MasterStorageClient.java │ │ │ │ ├── RemoteLocation.java │ │ │ │ ├── StorageClientMgr.java │ │ │ │ ├── StorageClientResponseHelper.java │ │ │ │ ├── WebDavException.java │ │ │ │ ├── WebDavFile.java │ │ │ │ ├── WebDavFileKeyProxyMapper.java │ │ │ │ ├── WebDavFileProxy.java │ │ │ │ ├── WebDavStorage.java │ │ │ │ ├── WebDavUploader.java │ │ │ │ └── WebdavCachedFileKey.java │ │ │ │ ├── keybind │ │ │ │ ├── KeyBindChangedEvent.java │ │ │ │ ├── KeyBindings.java │ │ │ │ ├── KeyboardShortcut.java │ │ │ │ ├── KeymapUtil.java │ │ │ │ └── ShortcutTextField.java │ │ │ │ ├── logging │ │ │ │ ├── CustomLoggingLevel.java │ │ │ │ ├── ExceptionTriage.java │ │ │ │ ├── LogFormatter.java │ │ │ │ ├── LoggingUtils.java │ │ │ │ ├── NBExceptionHandler.java │ │ │ │ └── NbLogging.java │ │ │ │ ├── model │ │ │ │ ├── AnnotatedObjectList.java │ │ │ │ ├── ConnectionResult.java │ │ │ │ ├── Decorator.java │ │ │ │ ├── DomainModelViewConstants.java │ │ │ │ ├── DomainModelViewUtils.java │ │ │ │ ├── DomainObjectMapper.java │ │ │ │ ├── DomainObjectPermission.java │ │ │ │ ├── ImageCategory.java │ │ │ │ ├── ImageModel.java │ │ │ │ ├── LoginErrorType.java │ │ │ │ ├── MappingType.java │ │ │ │ ├── PreferenceConstants.java │ │ │ │ ├── RecentFolder.java │ │ │ │ ├── ResultCategory.java │ │ │ │ ├── SampleImage.java │ │ │ │ ├── SplitHalf.java │ │ │ │ ├── SplitTypeInfo.java │ │ │ │ ├── descriptors │ │ │ │ │ ├── ArtifactDescriptor.java │ │ │ │ │ ├── ArtifactDescriptorList.java │ │ │ │ │ ├── DescriptorUtils.java │ │ │ │ │ ├── LSMArtifactDescriptor.java │ │ │ │ │ ├── LatestDescriptor.java │ │ │ │ │ ├── NeuronFragmentDescriptor.java │ │ │ │ │ ├── ResultArtifactDescriptor.java │ │ │ │ │ └── SelfArtifactDescriptor.java │ │ │ │ ├── keybind │ │ │ │ │ ├── OntologyKeyBind.java │ │ │ │ │ └── OntologyKeyBindings.java │ │ │ │ ├── results │ │ │ │ │ ├── NodeQueryConfiguration.java │ │ │ │ │ └── NodeQueryResults.java │ │ │ │ └── search │ │ │ │ │ ├── CriteriaOperator.java │ │ │ │ │ ├── DomainObjectResultPage.java │ │ │ │ │ ├── DomainObjectSearchResults.java │ │ │ │ │ ├── ResultIterator.java │ │ │ │ │ ├── ResultIteratorFind.java │ │ │ │ │ ├── ResultPage.java │ │ │ │ │ ├── SearchConfiguration.java │ │ │ │ │ ├── SearchResults.java │ │ │ │ │ └── SolrSearchResults.java │ │ │ │ ├── nodes │ │ │ │ ├── ChildObjectsNode.java │ │ │ │ ├── DomainObjectNode.java │ │ │ │ ├── IdentifiableNode.java │ │ │ │ ├── IdentifiableNodeSelectionModel.java │ │ │ │ ├── NodeSelectionEvent.java │ │ │ │ ├── NodeTracker.java │ │ │ │ ├── RootNode.java │ │ │ │ └── UserObjectNode.java │ │ │ │ ├── options │ │ │ │ ├── ApplicationOptions.java │ │ │ │ ├── DownloadOptions.java │ │ │ │ └── OptionConstants.java │ │ │ │ ├── util │ │ │ │ ├── BrandingConfig.java │ │ │ │ ├── CallbackByteChannel.java │ │ │ │ ├── ColorDepthUtils.java │ │ │ │ ├── ConcurrentUtils.java │ │ │ │ ├── ConfigProperties.java │ │ │ │ ├── ConsoleProperties.java │ │ │ │ ├── FileCallable.java │ │ │ │ ├── HelpTextUtils.java │ │ │ │ ├── ImageCache.java │ │ │ │ ├── MailDialogueBox.java │ │ │ │ ├── MailHelper.java │ │ │ │ ├── ParameterizedCallable.java │ │ │ │ ├── PathTranslator.java │ │ │ │ ├── PathUtil.java │ │ │ │ ├── Progress.java │ │ │ │ ├── Refreshable.java │ │ │ │ ├── RendererType2D.java │ │ │ │ ├── SimpleJwtParser.java │ │ │ │ ├── SingleThreadedTaskQueue.java │ │ │ │ ├── StringUtilsExtra.java │ │ │ │ ├── SystemCall.java │ │ │ │ ├── SystemInfo.java │ │ │ │ ├── Utils.java │ │ │ │ ├── WorkstationEnvironment.java │ │ │ │ └── compression │ │ │ │ │ ├── CompressedFileResolver.java │ │ │ │ │ ├── FileCollector.java │ │ │ │ │ ├── Mj2ExecutableCompressionAlgorithm.java │ │ │ │ │ └── TrivialCompression.java │ │ │ │ ├── web │ │ │ │ ├── EmbeddedWebServer.java │ │ │ │ └── FileProxyService.java │ │ │ │ ├── workers │ │ │ │ ├── AsyncServiceMonitoringWorker.java │ │ │ │ ├── BackgroundWorker.java │ │ │ │ ├── IndeterminateNoteProgressMonitor.java │ │ │ │ ├── IndeterminateProgressMonitor.java │ │ │ │ ├── NamedBackgroundWorker.java │ │ │ │ ├── ResultWorker.java │ │ │ │ ├── SearchMonitoringWorker.java │ │ │ │ ├── SimpleListenableFuture.java │ │ │ │ ├── SimpleWorker.java │ │ │ │ └── TaskMonitoringWorker.java │ │ │ │ └── ws │ │ │ │ ├── AnnotationSession.java │ │ │ │ ├── ConsoleDataServiceImpl.java │ │ │ │ ├── ConsoleObserverImpl.java │ │ │ │ ├── DomainToEntityTranslator.java │ │ │ │ ├── EmbeddedAxisServer.java │ │ │ │ ├── ExternalClient.java │ │ │ │ └── ExternalClientMgr.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ ├── console.properties │ │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── core │ │ │ └── Bundle.properties │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── core │ │ ├── api │ │ ├── DomainModelTest.java │ │ ├── JwtParserTest.java │ │ └── SageResponderTest.java │ │ ├── compression │ │ └── Mj2CompressionTest.java │ │ └── filecache │ │ ├── AgentStorageClientTest.java │ │ ├── MasterStorageClientTest.java │ │ ├── TestFileUtils.java │ │ └── WebDavUploaderTest.java ├── DarculaLAF │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── com │ │ │ └── revivius │ │ │ └── nb │ │ │ └── darcula │ │ │ ├── DarculaLFCustoms.java │ │ │ ├── DarkIconFilter.java │ │ │ ├── GuaranteedValue.java │ │ │ ├── Installer.java │ │ │ ├── RelativeColor.java │ │ │ ├── ToolbarXP.java │ │ │ ├── UIBootstrapValue.java │ │ │ ├── options │ │ │ ├── DarculaLAFOptionsPanelController.java │ │ │ └── DarculaLAFPanel.java │ │ │ └── ui │ │ │ ├── ContentAreaAwareButtonUI.java │ │ │ ├── ContentAreaAwareToggleButtonUI.java │ │ │ ├── DarculaSplitPaneDivider.java │ │ │ ├── DarculaSplitPaneUI.java │ │ │ ├── DarkScrollButtonTabbedPaneUI.java │ │ │ ├── FixedCheckBoxMenuItemUI.java │ │ │ ├── FixedMenuItemUIBase.java │ │ │ ├── FixedMenuUI.java │ │ │ ├── FixedRadioButtonMenuItemUI.java │ │ │ ├── FixedTableHeaderUI.java │ │ │ ├── IndentAwareTreeUI.java │ │ │ ├── InreasedInsetsTableHeaderBorder.java │ │ │ ├── OptionsAwareLabelUI.java │ │ │ ├── ReducedInsetsDarculaButtonPainter.java │ │ │ └── RolloverToolBarUI.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ ├── com │ │ ├── bulenkov │ │ │ └── darcula │ │ │ │ └── icons │ │ │ │ ├── splitGlueH.png │ │ │ │ └── splitGlueV.png │ │ └── revivius │ │ │ └── nb │ │ │ └── darcula │ │ │ ├── Bundle.properties │ │ │ ├── Editors │ │ │ ├── FontsColors │ │ │ │ └── Darcula │ │ │ │ │ ├── annotations.xml │ │ │ │ │ ├── highlights.xml │ │ │ │ │ └── tokenColorings.xml │ │ │ ├── application │ │ │ │ └── xml-dtd │ │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ └── text │ │ │ │ ├── css │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── html │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── plain │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── resources │ │ │ │ └── script │ │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-apache-conf │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-diff │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-el │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-json │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-jsp │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-php5 │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-properties │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-resources │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-sql │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-tag │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── x-tpl │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── xhtml │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ ├── xml-external-parsed-entity │ │ │ │ └── FontsColors │ │ │ │ │ └── Darcula │ │ │ │ │ └── tokenColorings.xml │ │ │ │ └── xml │ │ │ │ └── FontsColors │ │ │ │ └── Darcula │ │ │ │ └── tokenColorings.xml │ │ │ ├── closed.png │ │ │ ├── column-asc.png │ │ │ ├── column-desc.png │ │ │ ├── computer.png │ │ │ ├── detailsView.png │ │ │ ├── file.png │ │ │ ├── floppyDrive.png │ │ │ ├── folder.png │ │ │ ├── hardDrive.png │ │ │ ├── homeFolder.png │ │ │ ├── layer.xml │ │ │ ├── listView.png │ │ │ ├── newFolder.png │ │ │ ├── open.png │ │ │ ├── options │ │ │ ├── Bundle.properties │ │ │ ├── DarculaLAFPanel.form │ │ │ └── restart.png │ │ │ └── upFolder.png │ │ └── org │ │ ├── netbeans │ │ ├── core │ │ │ ├── multitabs │ │ │ │ └── resources │ │ │ │ │ ├── down_dark.png │ │ │ │ │ ├── left_dark.png │ │ │ │ │ ├── maximize_dark.png │ │ │ │ │ └── right_dark.png │ │ │ └── multiview │ │ │ │ └── resources │ │ │ │ └── splitview_dark.png │ │ ├── modules │ │ │ ├── cnd │ │ │ │ └── remote │ │ │ │ │ └── resources │ │ │ │ │ ├── host_no_ssh_dark.png │ │ │ │ │ ├── host_with_ssh_dark.png │ │ │ │ │ ├── sshClosed_dark.gif │ │ │ │ │ └── sshOpen_dark.gif │ │ │ ├── notifications │ │ │ │ └── resources │ │ │ │ │ ├── filter_dark.png │ │ │ │ │ ├── filter_rollover_dark.png │ │ │ │ │ ├── notificationsError_dark.png │ │ │ │ │ └── notifications_dark.png │ │ │ ├── profiler │ │ │ │ └── impl │ │ │ │ │ └── icons │ │ │ │ │ ├── attachButton_dark.gif │ │ │ │ │ ├── closePanel_dark.png │ │ │ │ │ ├── collapsedSnippet_dark.png │ │ │ │ │ ├── expandedSnippet_dark.png │ │ │ │ │ ├── filterContains_dark.png │ │ │ │ │ ├── filterNotContains_dark.png │ │ │ │ │ ├── hideColumn_dark.png │ │ │ │ │ ├── libraries_dark.png │ │ │ │ │ ├── maximizePanel_dark.png │ │ │ │ │ ├── minimizePanel_dark.png │ │ │ │ │ ├── popupArrow_dark.png │ │ │ │ │ ├── rename_dark.png │ │ │ │ │ ├── restorePanel_dark.png │ │ │ │ │ ├── runButton_dark.gif │ │ │ │ │ ├── snapshotDataObjectCPU32_dark.gif │ │ │ │ │ ├── snapshotDataObjectCPU_dark.gif │ │ │ │ │ ├── snapshotDataObjectFragment32_dark.gif │ │ │ │ │ ├── snapshotDataObjectFragment_dark.gif │ │ │ │ │ ├── snapshotDataObjectMemory32_dark.gif │ │ │ │ │ ├── snapshotDataObjectMemory_dark.gif │ │ │ │ │ ├── sortAsc_dark.png │ │ │ │ │ └── sortDesc_dark.png │ │ │ └── tasklist │ │ │ │ └── ui │ │ │ │ └── resources │ │ │ │ ├── columnsSortedAsc_dark.gif │ │ │ │ └── columnsSortedDesc_dark.gif │ │ └── swing │ │ │ └── tabcontrol │ │ │ └── resources │ │ │ ├── vista_slidebottom_enabled_dark.png │ │ │ ├── vista_slidebottom_pressed_dark.png │ │ │ ├── vista_slidebottom_rollover_dark.png │ │ │ ├── vista_slideleft_enabled_dark.png │ │ │ ├── vista_slideleft_pressed_dark.png │ │ │ ├── vista_slideleft_rollover_dark.png │ │ │ ├── vista_slideright_enabled_dark.png │ │ │ ├── vista_slideright_pressed_dark.png │ │ │ ├── vista_slideright_rollover_dark.png │ │ │ ├── win8_maximize_enabled_dark.png │ │ │ ├── win8_minimize_enabled_dark.png │ │ │ ├── win8_pin_enabled_dark.png │ │ │ ├── win8_popup_disabled_dark.png │ │ │ ├── win8_popup_enabled_dark.png │ │ │ ├── win8_restore_group_enabled_dark.png │ │ │ ├── win8_scrollleft_disabled_dark.png │ │ │ ├── win8_scrollleft_enabled_dark.png │ │ │ ├── win8_scrollright_disabled_dark.png │ │ │ └── win8_scrollright_enabled_dark.png │ │ └── openide │ │ └── awt │ │ └── resources │ │ ├── arrow_dark.png │ │ ├── mac_close_enabled_dark.png │ │ ├── mac_close_pressed_dark.png │ │ ├── mac_close_rollover_dark.png │ │ ├── metal_bigclose_enabled_dark.png │ │ ├── metal_bigclose_pressed_dark.png │ │ ├── metal_bigclose_rollover_dark.png │ │ ├── metal_close_enabled_dark.png │ │ ├── metal_close_pressed_dark.png │ │ ├── metal_close_rollover_dark.png │ │ ├── quicksearch │ │ └── findMenu_dark.png │ │ ├── toolbar_arrow_horizontal_dark.png │ │ ├── toolbar_arrow_vertical_dark.png │ │ ├── win8_bigclose_enabled_dark.png │ │ └── win8_bigclose_enabled_dark_old.png ├── DataBrowser │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ └── workstation │ │ │ │ └── browser │ │ │ │ ├── actions │ │ │ │ ├── AbstractExportPickedAction.java │ │ │ │ ├── BulkEditAnnotationKeyValueAction.java │ │ │ │ ├── ContextualFindAction.java │ │ │ │ ├── DomainObjectContextMenu.java │ │ │ │ ├── ExportPickedGUIDs.java │ │ │ │ ├── ExportPickedLineNames.java │ │ │ │ ├── ExportPickedNames.java │ │ │ │ ├── ExportPickedToSplitGenWebsite.java │ │ │ │ ├── ExportResultsAction.java │ │ │ │ ├── ImportIdentifiersAction.java │ │ │ │ ├── NavigateBack.java │ │ │ │ ├── NavigateForward.java │ │ │ │ ├── NewFilterAction.java │ │ │ │ ├── NewFilterActionListener.java │ │ │ │ ├── NewFolderAction.java │ │ │ │ ├── NewFolderActionListener.java │ │ │ │ ├── NewOntologyAction.java │ │ │ │ ├── NewOntologyActionListener.java │ │ │ │ ├── NewSyncedRootAction.java │ │ │ │ ├── OntologyElementAction.java │ │ │ │ ├── OpenInFinderAction.java │ │ │ │ ├── OpenInNeuronAnnotatorActionListener.java │ │ │ │ ├── OpenInToolAction.java │ │ │ │ ├── OpenWithDefaultAppAction.java │ │ │ │ ├── RemoveAnnotationsAction.java │ │ │ │ ├── RemoveItemsActionListener.java │ │ │ │ ├── SearchAction.java │ │ │ │ ├── StartPageMenuAction.java │ │ │ │ ├── ToolsMenuAction.java │ │ │ │ └── context │ │ │ │ │ ├── AddToFolderAction.java │ │ │ │ │ ├── ApplyAnnotationAction.java │ │ │ │ │ ├── ApplyAnnotationActionListener.java │ │ │ │ │ ├── BaseCheckAction.java │ │ │ │ │ ├── ChangePermissionsAction.java │ │ │ │ │ ├── CheckFalseAction.java │ │ │ │ │ ├── CheckTrueAction.java │ │ │ │ │ ├── EditSyncedRootAction.java │ │ │ │ │ ├── ExportFolderStructureAction.java │ │ │ │ │ ├── NewDomainObjectAction.java │ │ │ │ │ ├── OntologyAddTermAction.java │ │ │ │ │ ├── OntologyExportAction.java │ │ │ │ │ ├── OntologyImportAction.java │ │ │ │ │ ├── OntologyReplaceAction.java │ │ │ │ │ ├── OntologyShortcutAction.java │ │ │ │ │ ├── OpenInNewViewerAction.java │ │ │ │ │ ├── OpenInViewerAction.java │ │ │ │ │ ├── OpenInVvdNAPluginActionListener.java │ │ │ │ │ ├── PasteAnnotationTermAction.java │ │ │ │ │ ├── RefreshSyncedRootAction.java │ │ │ │ │ ├── RemoveAnnotationByTermAction.java │ │ │ │ │ ├── RemoveAnnotationByTermActionListener.java │ │ │ │ │ ├── RemoveItemsAction.java │ │ │ │ │ ├── RemoveOntologyTermAction.java │ │ │ │ │ ├── RenameAction.java │ │ │ │ │ ├── SearchHereAction.java │ │ │ │ │ ├── ShowInLightboxAction.java │ │ │ │ │ ├── SubtractFromFolderAction.java │ │ │ │ │ └── ViewDetailsAction.java │ │ │ │ ├── api │ │ │ │ ├── lifecycle │ │ │ │ │ └── ShowingHook.java │ │ │ │ ├── services │ │ │ │ │ ├── ConsoleBrowsingController.java │ │ │ │ │ ├── ConsoleDataController.java │ │ │ │ │ ├── ConsoleInspectionController.java │ │ │ │ │ ├── ConsoleProgressController.java │ │ │ │ │ ├── FilterObjectHandler.java │ │ │ │ │ ├── GroupedFolderHandler.java │ │ │ │ │ ├── SyncedPathObjectHandler.java │ │ │ │ │ └── TreeNodeObjectHandler.java │ │ │ │ └── state │ │ │ │ │ ├── DataBrowserMgr.java │ │ │ │ │ └── NavigationHistory.java │ │ │ │ ├── gui │ │ │ │ ├── components │ │ │ │ │ ├── DomainExplorerTopComponent.java │ │ │ │ │ ├── DomainInspectorTopComponent.java │ │ │ │ │ ├── DomainListViewManager.java │ │ │ │ │ ├── DomainListViewTopComponent.java │ │ │ │ │ ├── DomainViewerManager.java │ │ │ │ │ ├── DomainViewerTopComponent.java │ │ │ │ │ ├── OntologyExplorerTopComponent.java │ │ │ │ │ ├── ProgressTopComponent.java │ │ │ │ │ ├── SampleResultViewerManager.java │ │ │ │ │ ├── SampleResultViewerTopComponent.java │ │ │ │ │ ├── StartPageTopComponent.java │ │ │ │ │ ├── ViewerManager.java │ │ │ │ │ └── ViewerUtils.java │ │ │ │ ├── dialogs │ │ │ │ │ ├── AnnotationBuilderDialog.java │ │ │ │ │ ├── AutoAnnotationPermissionDialog.java │ │ │ │ │ ├── BulkChangePermissionDialog.java │ │ │ │ │ ├── ChangeSampleCompressionDialog.java │ │ │ │ │ ├── DataSetDialog.java │ │ │ │ │ ├── DataSetListDialog.java │ │ │ │ │ ├── DomainDetailsDialog.java │ │ │ │ │ ├── DomainObjectPermissionDialog.java │ │ │ │ │ ├── EditCriteriaDialog.java │ │ │ │ │ ├── IconGridViewerConfigDialog.java │ │ │ │ │ ├── KeyBindDialog.java │ │ │ │ │ ├── SecondaryDataRemovalDialog.java │ │ │ │ │ ├── SyncedRootDialog.java │ │ │ │ │ ├── TableViewerConfigDialog.java │ │ │ │ │ ├── download │ │ │ │ │ │ ├── DownloadErrorType.java │ │ │ │ │ │ ├── DownloadFileItem.java │ │ │ │ │ │ ├── DownloadObject.java │ │ │ │ │ │ ├── DownloadVisualPanel1.java │ │ │ │ │ │ ├── DownloadVisualPanel2.java │ │ │ │ │ │ ├── DownloadVisualPanel3.java │ │ │ │ │ │ ├── DownloadWizardAction.java │ │ │ │ │ │ ├── DownloadWizardIterator.java │ │ │ │ │ │ ├── DownloadWizardPanel1.java │ │ │ │ │ │ ├── DownloadWizardPanel2.java │ │ │ │ │ │ ├── DownloadWizardPanel3.java │ │ │ │ │ │ ├── DownloadWizardState.java │ │ │ │ │ │ └── OutputExtensionMap.java │ │ │ │ │ └── identifiers │ │ │ │ │ │ ├── IdentifiersVisualPanel1.java │ │ │ │ │ │ ├── IdentifiersVisualPanel2.java │ │ │ │ │ │ ├── IdentifiersWizardIterator.java │ │ │ │ │ │ ├── IdentifiersWizardPanel1.java │ │ │ │ │ │ ├── IdentifiersWizardPanel2.java │ │ │ │ │ │ └── IdentifiersWizardState.java │ │ │ │ ├── editor │ │ │ │ │ ├── ConfigPanel.java │ │ │ │ │ ├── DomainObjectEditorPanel.java │ │ │ │ │ ├── DomainObjectEditorStateImpl.java │ │ │ │ │ ├── FileGroupContextMenu.java │ │ │ │ │ ├── FileGroupEditorPanel.java │ │ │ │ │ ├── FilterEditorPanel.java │ │ │ │ │ ├── GroupContextMenu.java │ │ │ │ │ ├── GroupedFolderEditorPanel.java │ │ │ │ │ ├── GroupedFolderEditorState.java │ │ │ │ │ ├── LabelContextMenu.java │ │ │ │ │ ├── NeuronSeparationEditorPanel.java │ │ │ │ │ ├── PipelineResultContextMenu.java │ │ │ │ │ ├── SampleEditorPanel.java │ │ │ │ │ ├── SampleErrorContextMenu.java │ │ │ │ │ ├── SelectionButton.java │ │ │ │ │ ├── SingleSelectionButton.java │ │ │ │ │ └── TreeNodeEditorPanel.java │ │ │ │ ├── find │ │ │ │ │ ├── FindContext.java │ │ │ │ │ ├── FindContextActivator.java │ │ │ │ │ ├── FindContextManager.java │ │ │ │ │ ├── FindContextRegistration.java │ │ │ │ │ └── FindToolbar.java │ │ │ │ ├── hud │ │ │ │ │ └── Hud.java │ │ │ │ ├── inspector │ │ │ │ │ └── DomainInspectorPanel.java │ │ │ │ ├── lasso │ │ │ │ │ ├── BufferedImageCanvas.java │ │ │ │ │ ├── BufferedImagePlus.java │ │ │ │ │ ├── ByteProcessor.java │ │ │ │ │ ├── ColorProcessor.java │ │ │ │ │ ├── Filler.java │ │ │ │ │ ├── FreehandRoi.java │ │ │ │ │ ├── ImageCanvas.java │ │ │ │ │ ├── ImageMaskingPanel.java │ │ │ │ │ ├── ImagePlus.java │ │ │ │ │ ├── ImageProcessor.java │ │ │ │ │ ├── PlugInFilter.java │ │ │ │ │ ├── PolygonFiller.java │ │ │ │ │ ├── PolygonRoi.java │ │ │ │ │ ├── Roi.java │ │ │ │ │ └── ShapeRoi.java │ │ │ │ ├── listview │ │ │ │ │ ├── ListViewerType.java │ │ │ │ │ ├── PaginatedDomainResultsPanel.java │ │ │ │ │ ├── PaginatedResultsPanel.java │ │ │ │ │ ├── icongrid │ │ │ │ │ │ ├── AnnotatedImageButton.java │ │ │ │ │ │ ├── AnnotationContextMenu.java │ │ │ │ │ │ ├── DecoratedImage.java │ │ │ │ │ │ ├── DomainObjectIconGridViewer.java │ │ │ │ │ │ ├── DomainObjectTransferHandler.java │ │ │ │ │ │ ├── DynamicImageButton.java │ │ │ │ │ │ ├── IconGridViewerConfiguration.java │ │ │ │ │ │ ├── IconGridViewerPanel.java │ │ │ │ │ │ ├── IconGridViewerState.java │ │ │ │ │ │ ├── IconGridViewerToolbar.java │ │ │ │ │ │ ├── ImagesPanel.java │ │ │ │ │ │ ├── LoadImageWorker.java │ │ │ │ │ │ ├── StaticImageButton.java │ │ │ │ │ │ └── TransferableDomainObjectList.java │ │ │ │ │ └── table │ │ │ │ │ │ ├── DomainObjectTableViewer.java │ │ │ │ │ │ ├── TableViewerConfiguration.java │ │ │ │ │ │ ├── TableViewerPanel.java │ │ │ │ │ │ ├── TableViewerState.java │ │ │ │ │ │ └── TableViewerToolbar.java │ │ │ │ ├── ontology │ │ │ │ │ └── AnnotationEditor.java │ │ │ │ ├── options │ │ │ │ │ ├── BrowserOptions.java │ │ │ │ │ ├── BrowserOptionsPanel.java │ │ │ │ │ ├── BrowserOptionsPanelController.java │ │ │ │ │ ├── DownloadOptionsPanel.java │ │ │ │ │ ├── DownloadOptionsPanelController.java │ │ │ │ │ ├── ToolsOptionsPanel.java │ │ │ │ │ ├── ToolsOptionsPanelController.java │ │ │ │ │ └── package-info.java │ │ │ │ ├── progress │ │ │ │ │ ├── ProgressMeterMgr.java │ │ │ │ │ └── ProgressMeterPanel.java │ │ │ │ ├── support │ │ │ │ │ ├── AnnotationTablePanel.java │ │ │ │ │ ├── AnnotationTagCloudPanel.java │ │ │ │ │ ├── FileDownloadWorker.java │ │ │ │ │ ├── FilterQuickSearch.java │ │ │ │ │ ├── ImageTypeSelectionButton.java │ │ │ │ │ ├── LoadedImagePanel.java │ │ │ │ │ ├── NodeChooser.java │ │ │ │ │ ├── ResultSelectionButton.java │ │ │ │ │ ├── SampleUIUtils.java │ │ │ │ │ ├── SelectablePanel.java │ │ │ │ │ ├── SelectablePanelListPanel.java │ │ │ │ │ ├── SortCriteriaButton.java │ │ │ │ │ └── TreeNodeChooser.java │ │ │ │ └── tree │ │ │ │ │ ├── CustomTreeFind.java │ │ │ │ │ ├── CustomTreeToolbar.java │ │ │ │ │ └── CustomTreeView.java │ │ │ │ ├── nodes │ │ │ │ ├── OntologyChildFactory.java │ │ │ │ ├── OntologyNode.java │ │ │ │ ├── OntologyRootNode.java │ │ │ │ ├── OntologyRootNodeChildFactory.java │ │ │ │ ├── OntologyTermNode.java │ │ │ │ ├── SyncedPathNode.java │ │ │ │ ├── SyncedRootNode.java │ │ │ │ ├── SyncedRootsNode.java │ │ │ │ └── SyncedRootsNodeProvider.java │ │ │ │ ├── selection │ │ │ │ ├── FileGroupSelectionEvent.java │ │ │ │ ├── FileGroupSelectionModel.java │ │ │ │ ├── PipelineErrorSelectionEvent.java │ │ │ │ └── PipelineResultSelectionEvent.java │ │ │ │ └── tools │ │ │ │ ├── ToolInfo.java │ │ │ │ ├── ToolListener.java │ │ │ │ ├── ToolMgr.java │ │ │ │ └── preferences │ │ │ │ ├── InfoObject.java │ │ │ │ ├── PrefMgrListener.java │ │ │ │ ├── PrefMgrListenerAdapter.java │ │ │ │ └── PreferenceManager.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── browser │ │ │ ├── Bundle.properties │ │ │ ├── gui │ │ │ ├── components │ │ │ │ ├── DomainExplorerTopComponent.form │ │ │ │ ├── DomainInspectorTopComponent.form │ │ │ │ ├── DomainListViewTopComponent.form │ │ │ │ ├── DomainViewerTopComponent.form │ │ │ │ ├── OntologyExplorerTopComponent.form │ │ │ │ ├── ProgressTopComponent.form │ │ │ │ ├── SampleResultViewerTopComponent.form │ │ │ │ └── StartPageTopComponent.form │ │ │ ├── dialogs │ │ │ │ ├── aa_implications.html │ │ │ │ ├── neuron_sep_implications.html │ │ │ │ ├── neuron_separation_implications.html │ │ │ │ └── stitched_file_implications.html │ │ │ └── options │ │ │ │ ├── BrowserOptionsPanel.form │ │ │ │ ├── DownloadOptionsPanel.form │ │ │ │ └── ToolsOptionsPanel.form │ │ │ ├── images │ │ │ └── application_go.png │ │ │ └── layer.xml │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── gui │ │ └── viewer3d │ │ ├── TestMeshRender.java │ │ └── TestMip3d.java ├── GLViewerTools │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ └── gltools │ │ │ │ ├── BasicGL3Actor.java │ │ │ │ ├── BasicScreenBlitActor.java │ │ │ │ ├── BasicShaderProgram.java │ │ │ │ ├── BufferClearActor.java │ │ │ │ ├── ColorBackgroundActor.java │ │ │ │ ├── Framebuffer.java │ │ │ │ ├── GL3Actor.java │ │ │ │ ├── GL3Resource.java │ │ │ │ ├── LightingBlitActor.java │ │ │ │ ├── MJ2Parser.java │ │ │ │ ├── MeshActor.java │ │ │ │ ├── MeshFloatVbo.java │ │ │ │ ├── MultipassRenderer.java │ │ │ │ ├── RenderPass.java │ │ │ │ ├── RenderTarget.java │ │ │ │ ├── ShaderProgram.java │ │ │ │ ├── ShaderStep.java │ │ │ │ ├── SolidColorGLRenderer.java │ │ │ │ ├── activity_logging │ │ │ │ └── ActivityLogHelper.java │ │ │ │ ├── material │ │ │ │ ├── BasicMaterial.java │ │ │ │ ├── DepthSlabClipper.java │ │ │ │ ├── DiffuseMaterial.java │ │ │ │ ├── FlatMeshMaterial.java │ │ │ │ ├── FlatMeshShader.java │ │ │ │ ├── IBLDiffuseMaterial.java │ │ │ │ ├── ImageParticleMaterial.java │ │ │ │ ├── Material.java │ │ │ │ ├── NormalMaterial.java │ │ │ │ ├── OutlineMaterial.java │ │ │ │ ├── ScreenGradientColorMaterial.java │ │ │ │ ├── TexCoordMaterial.java │ │ │ │ ├── TransparentEnvelope.java │ │ │ │ ├── VolumeSurfaceMaterial.java │ │ │ │ └── WireframeMaterial.java │ │ │ │ ├── scenegraph │ │ │ │ ├── BasicSceneNode.java │ │ │ │ ├── CameraNode.java │ │ │ │ ├── DisposeGlVisitor.java │ │ │ │ ├── DrawableNode.java │ │ │ │ ├── NodeVisitor.java │ │ │ │ ├── PerspectiveCameraNode.java │ │ │ │ ├── RenderBin.java │ │ │ │ ├── RenderInfo.java │ │ │ │ ├── RenderViewport.java │ │ │ │ ├── SceneGraphRenderer.java │ │ │ │ ├── SceneNode.java │ │ │ │ └── TransformNode.java │ │ │ │ └── texture │ │ │ │ ├── BasicTexture.java │ │ │ │ ├── Texture2d.java │ │ │ │ └── Texture3d.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ └── org │ │ │ └── janelia │ │ │ └── gltools │ │ │ ├── Bundle.properties │ │ │ ├── camera.gif │ │ │ ├── material │ │ │ ├── OfficeDiffuseLP.tiff │ │ │ ├── lightprobe │ │ │ │ ├── ComponentSphere.png │ │ │ │ ├── Office1W165.txt │ │ │ │ ├── Office1W165Both.ppm │ │ │ │ ├── Office1W165Diffuse.ppm │ │ │ │ ├── Office1W165LightProbe.ppm │ │ │ │ ├── circleBoth.ppm │ │ │ │ ├── parentBoth.ppm │ │ │ │ └── plusBoth.ppm │ │ │ └── shader │ │ │ │ ├── BasicMeshVrtx.glsl │ │ │ │ ├── ContrastFrag.glsl │ │ │ │ ├── IBLDiffuseFrag.glsl │ │ │ │ ├── IBLDiffuseVrtx.glsl │ │ │ │ ├── ImageParticleFrag.glsl │ │ │ │ ├── ImageParticleVrtx.glsl │ │ │ │ ├── LightingFrag.glsl │ │ │ │ ├── OutlineFrag.glsl │ │ │ │ ├── OutlineGeom.glsl │ │ │ │ ├── OutlineVrtx.glsl │ │ │ │ ├── PanoramaVrtx.glsl │ │ │ │ ├── RenderPassThroughFrag.glsl │ │ │ │ ├── RenderPassVrtx.glsl │ │ │ │ ├── TransparentEnvelopeFrag.glsl │ │ │ │ ├── VolumeMipFrag.glsl │ │ │ │ ├── VolumeMipVrtx.glsl │ │ │ │ ├── VolumeSurfaceFrag.glsl │ │ │ │ ├── VolumeSurfaceVrtx.glsl │ │ │ │ ├── WireframeFrag.glsl │ │ │ │ ├── WireframeGeom.glsl │ │ │ │ └── WireframeVrtx.glsl │ │ │ └── texture │ │ │ └── lcm_font_df.png │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── gltools │ │ └── scenegraph │ │ └── SceneGraphRendererTest.java ├── Geometry3d │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ ├── geometry │ │ │ │ ├── units │ │ │ │ │ ├── Quantity.java │ │ │ │ │ ├── Unit.java │ │ │ │ │ ├── Value.java │ │ │ │ │ ├── dimension │ │ │ │ │ │ ├── Dimension.java │ │ │ │ │ │ └── Length.java │ │ │ │ │ └── si │ │ │ │ │ │ └── Micrometer.java │ │ │ │ └── util │ │ │ │ │ └── PerformanceTimer.java │ │ │ │ └── geometry3d │ │ │ │ ├── AbstractCamera.java │ │ │ │ ├── BasicObject3D.java │ │ │ │ ├── BasicVector.java │ │ │ │ ├── Box3.java │ │ │ │ ├── CentroidHaver.java │ │ │ │ ├── ChannelBrightnessModel.java │ │ │ │ ├── Child.java │ │ │ │ ├── ComposableObservable.java │ │ │ │ ├── CompositeObject3d.java │ │ │ │ ├── ConstVector.java │ │ │ │ ├── ConstVector3.java │ │ │ │ ├── CoordinateAxis.java │ │ │ │ ├── Copyable.java │ │ │ │ ├── CubeGeometry.java │ │ │ │ ├── Edge.java │ │ │ │ ├── Face.java │ │ │ │ ├── LateralOffsetCamera.java │ │ │ │ ├── Matrix4.java │ │ │ │ ├── MeshGeometry.java │ │ │ │ ├── Object3d.java │ │ │ │ ├── ObservableInterface.java │ │ │ │ ├── OrthographicCamera.java │ │ │ │ ├── Parent.java │ │ │ │ ├── PerspectiveCamera.java │ │ │ │ ├── Quaternion.java │ │ │ │ ├── Rotation.java │ │ │ │ ├── ScreenQuadMesh.java │ │ │ │ ├── Sphere.java │ │ │ │ ├── Triangle.java │ │ │ │ ├── Vantage.java │ │ │ │ ├── VantageInterface.java │ │ │ │ ├── Vector2.java │ │ │ │ ├── Vector3.java │ │ │ │ ├── Vector4.java │ │ │ │ ├── Vertex.java │ │ │ │ ├── ViewSlab.java │ │ │ │ ├── Viewport.java │ │ │ │ ├── VolumeTextureMesh.java │ │ │ │ ├── WavefrontObjLoader.java │ │ │ │ └── camera │ │ │ │ ├── BasicFrustumShift.java │ │ │ │ ├── BasicViewSlab.java │ │ │ │ ├── ConstFrustumShift.java │ │ │ │ ├── ConstRotation.java │ │ │ │ ├── ConstVantage.java │ │ │ │ ├── ConstViewSlab.java │ │ │ │ ├── ConstViewport.java │ │ │ │ ├── GeneralCamera.java │ │ │ │ ├── ShiftableCamera.java │ │ │ │ ├── SlabbableCamera.java │ │ │ │ ├── VantageableCamera.java │ │ │ │ └── ViewportableCamera.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ └── org │ │ │ └── janelia │ │ │ └── geometry3d │ │ │ └── Bundle.properties │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── geometry3d │ │ └── Vector3Test.java ├── HortaTracer │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ ├── net │ │ │ └── jpountz │ │ │ │ └── lz4 │ │ │ │ ├── LZ4FrameInputStream.java │ │ │ │ └── LZ4FrameOutputStream.java │ │ └── org │ │ │ └── janelia │ │ │ └── horta │ │ │ ├── BrainTileInfo.java │ │ │ ├── BrainTileInfoBuilder.java │ │ │ ├── CachedTileLoader.java │ │ │ ├── ColorSlidersTopComponent.java │ │ │ ├── ConstantRadiusEstimator.java │ │ │ ├── FileBasedTileLoader.java │ │ │ ├── HortaMenuContext.java │ │ │ ├── HortaMouseEventDispatcher.java │ │ │ ├── ImmutableNeuriteAnchor.java │ │ │ ├── JadeBasedTileLoader.java │ │ │ ├── KtxBlockMenuBuilder.java │ │ │ ├── NeuronTraceLoader.java │ │ │ ├── NeuronTracerTopComponent.java │ │ │ ├── PickIdManager.java │ │ │ ├── PlayReviewManager.java │ │ │ ├── PlayState.java │ │ │ ├── RadiusEstimator.java │ │ │ ├── TileLoader.java │ │ │ ├── TracingInteractor.java │ │ │ ├── TwoDimensionalRadiusEstimator.java │ │ │ ├── ViewLoader.java │ │ │ ├── VolumeProjection.java │ │ │ ├── actions │ │ │ ├── DecreaseSpeedNeuronCamAction.java │ │ │ ├── ForwardPlayReviewAction.java │ │ │ ├── IncreaseSpeedNeuronCamAction.java │ │ │ ├── LoadHortaTileAtFocusAction.java │ │ │ ├── ResetHortaRotationAction.java │ │ │ ├── ReversePlayReviewAction.java │ │ │ ├── StopPlayReviewAction.java │ │ │ ├── ZSliceDownAction.java │ │ │ └── ZSliceUpAction.java │ │ │ ├── activity_logging │ │ │ └── ActivityLogHelper.java │ │ │ ├── actors │ │ │ ├── BrainTileMesh.java │ │ │ ├── CenterCrossHairActor.java │ │ │ ├── ConesMaterial.java │ │ │ ├── DensityCursorActor.java │ │ │ ├── OmeZarrMesh.java │ │ │ ├── OmeZarrVolumeActor.java │ │ │ ├── OmeZarrVolumeMeshActor.java │ │ │ ├── ParentVertexActor.java │ │ │ ├── ScaleBar.java │ │ │ ├── SortableBlockActor.java │ │ │ ├── SortableBlockActorSource.java │ │ │ ├── SpheresActor.java │ │ │ ├── SpheresMaterial.java │ │ │ ├── TetVolumeActor.java │ │ │ ├── TetVolumeMaterial.java │ │ │ ├── TetVolumeMeshActor.java │ │ │ └── VertexHighlightActor.java │ │ │ ├── blocks │ │ │ ├── BasicTileCache.java │ │ │ ├── BlockChooser.java │ │ │ ├── BlockDisplayUpdater.java │ │ │ ├── BlockTileData.java │ │ │ ├── BlockTileKey.java │ │ │ ├── BlockTileResolution.java │ │ │ ├── BlockTileSource.java │ │ │ ├── Finest8DisplayBlockChooser.java │ │ │ ├── KtxBlockLoadRunner.java │ │ │ ├── KtxOctreeBlockTileData.java │ │ │ ├── KtxOctreeBlockTileKey.java │ │ │ ├── KtxOctreeBlockTileSource.java │ │ │ ├── KtxOctreeResolution.java │ │ │ ├── KtxTileCache.java │ │ │ ├── OctreeDisplayBlockChooser.java │ │ │ ├── OmeZarrBlockChooser.java │ │ │ ├── OmeZarrBlockLoadRunner.java │ │ │ ├── OmeZarrBlockResolution.java │ │ │ ├── OmeZarrBlockTileKey.java │ │ │ ├── OmeZarrBlockTileSource.java │ │ │ ├── OmeZarrOffsetKey.java │ │ │ └── OmeZarrTileCache.java │ │ │ ├── camera │ │ │ ├── CatmullRomSplineKernel.java │ │ │ ├── Interpolator.java │ │ │ ├── InterpolatorKernel.java │ │ │ ├── LinearInterpolatorKernel.java │ │ │ ├── PrimitiveInterpolator.java │ │ │ └── Vector3Interpolator.java │ │ │ ├── controller │ │ │ └── HortaManager.java │ │ │ ├── ktx │ │ │ ├── KtxData.java │ │ │ └── KtxHeader.java │ │ │ ├── loader │ │ │ ├── BasicDataSource.java │ │ │ ├── DataSource.java │ │ │ ├── DroppedFileHandler.java │ │ │ ├── FileDataSource.java │ │ │ ├── FileHandler.java │ │ │ ├── FileTypeLoader.java │ │ │ ├── GZIPFileLoader.java │ │ │ ├── HortaKtxLoader.java │ │ │ ├── HortaVolumeCache.java │ │ │ ├── LZ4FileLoader.java │ │ │ ├── ObjMeshLoader.java │ │ │ ├── OmeZarrLoader.java │ │ │ ├── TarFileLoader.java │ │ │ ├── TgzFileLoader.java │ │ │ └── TilebaseYamlLoader.java │ │ │ ├── modelapi │ │ │ └── SpecimenImage.java │ │ │ ├── movie │ │ │ ├── BasicKeyFrame.java │ │ │ ├── BasicMoviePlayState.java │ │ │ ├── BasicMovieTimeline.java │ │ │ ├── HortaMovieSource.java │ │ │ ├── KeyFrame.java │ │ │ ├── MovieMakerTopComponent.java │ │ │ ├── MoviePlayState.java │ │ │ ├── MovieRenderer.java │ │ │ ├── MovieSource.java │ │ │ ├── MovieTimelineSerializer.java │ │ │ ├── SaveFramesPanel.java │ │ │ ├── Timeline.java │ │ │ ├── ViewerState.java │ │ │ └── ViewerStateJsonDeserializer.java │ │ │ ├── neuronvbo │ │ │ ├── NeuronVbo.java │ │ │ ├── NeuronVboActor.java │ │ │ ├── NeuronVboPool.java │ │ │ └── VertexData.java │ │ │ ├── nodes │ │ │ ├── HortaSceneEditorTopComponent.java │ │ │ └── ObjectMeshPanel.java │ │ │ ├── omezarr │ │ │ ├── JadeZarrStoreProvider.java │ │ │ ├── OmeZarrJadeReader.java │ │ │ ├── OmeZarrReaderCompletionObserver.java │ │ │ └── OmeZarrReaderProgressObserver.java │ │ │ ├── options │ │ │ ├── TileLoadingOptionsPanelController.java │ │ │ ├── TileLoadingPanel.java │ │ │ └── package-info.java │ │ │ ├── render │ │ │ ├── BackgroundRenderPass.java │ │ │ ├── NeuronMPRenderer.java │ │ │ ├── OpaqueRenderPass.java │ │ │ ├── RemapColorActor.java │ │ │ └── VolumeRenderPass.java │ │ │ ├── util │ │ │ └── HttpClientHelper.java │ │ │ └── volume │ │ │ ├── BrickActor.java │ │ │ ├── BrickInfo.java │ │ │ ├── BrickInfoSet.java │ │ │ ├── LocalVolumeBrickSource.java │ │ │ ├── RawVolumeBrickSource.java │ │ │ ├── StaticVolumeBrickSource.java │ │ │ ├── VolumeMipMaterial.java │ │ │ └── VoxelIndex.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── horta │ │ ├── 1404592974_adjust.png │ │ ├── 16-16-8f894f2f6832f3a576bd8f6f8cdf3da0.png │ │ ├── Bundle.properties │ │ ├── ColorSliderIcon16.png │ │ ├── ColorSliderIcon64.png │ │ ├── ColorSlidersTopComponent.form │ │ ├── NeuronTracerTopComponent.form │ │ ├── images │ │ ├── HotColorMap.png │ │ ├── VertexBranch2.png │ │ ├── VertexIsland2.png │ │ ├── VertexLink2.png │ │ ├── VertexTip2.png │ │ ├── brain-icon2.png │ │ ├── center_crosshair.png │ │ ├── center_crosshair_darker.png │ │ ├── control_fastforward_blue.png │ │ ├── control_pause_blue.png │ │ ├── control_rewind_blue.png │ │ ├── frame_circle.png │ │ ├── mesh.png │ │ ├── mouse_neurons16.png │ │ ├── neuron1.png │ │ ├── neuronTracerCubic16.png │ │ ├── neuronTracerCubic32.png │ │ ├── neuronTracerCubic64.png │ │ └── neuron_group.png │ │ ├── movie │ │ ├── Bundle.properties │ │ └── MovieMakerTopComponent.form │ │ ├── nodes │ │ └── HortaSceneEditorTopComponent.form │ │ ├── options │ │ └── TileLoadingPanel.form │ │ └── shader │ │ ├── ConesColorFrag430.glsl │ │ ├── ConesColorGeom430.glsl │ │ ├── ConesFrag330.glsl │ │ ├── ConesGeom330.glsl │ │ ├── ConesVrtx330.glsl │ │ ├── SpheresColorFrag430.glsl │ │ ├── SpheresColorGeom430.glsl │ │ ├── SpheresColorVrtx430.glsl │ │ ├── SpheresFrag330.glsl │ │ ├── SpheresGeom330.glsl │ │ ├── SpheresVrtx330.glsl │ │ ├── TetVolumeFrag330.glsl │ │ ├── TetVolumeGeom330.glsl │ │ ├── TetVolumeVrtx330.glsl │ │ ├── imposter_fns120.glsl │ │ └── imposter_fns330.glsl ├── IntegrationAPIs │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── integration │ │ │ ├── activity_logging │ │ │ ├── ActionString.java │ │ │ ├── CategoryString.java │ │ │ ├── MetricsLoggingConstants.java │ │ │ ├── MetricsLoggingWrapper.java │ │ │ └── ToolString.java │ │ │ ├── api │ │ │ ├── ActivityLogging.java │ │ │ ├── BrowsingController.java │ │ │ ├── DataController.java │ │ │ ├── ErrorHandler.java │ │ │ ├── FileAccessController.java │ │ │ ├── FrameModel.java │ │ │ ├── InspectionController.java │ │ │ ├── PreferenceModel.java │ │ │ ├── ProgressController.java │ │ │ └── SettingsModel.java │ │ │ ├── spi │ │ │ ├── actions │ │ │ │ └── AdminActionBuilder.java │ │ │ ├── compression │ │ │ │ ├── CompressedFileResolverI.java │ │ │ │ ├── CompressionAlgorithm.java │ │ │ │ └── CompressionException.java │ │ │ ├── domain │ │ │ │ ├── Compatible.java │ │ │ │ ├── ContextualActionBuilder.java │ │ │ │ ├── DomainObjectHandler.java │ │ │ │ └── ServiceAcceptorHelper.java │ │ │ ├── gui │ │ │ │ └── StartPageProvider.java │ │ │ └── nodes │ │ │ │ ├── NodeGenerator.java │ │ │ │ ├── NodePreference.java │ │ │ │ └── NodeProvider.java │ │ │ └── util │ │ │ ├── FrameworkAccess.java │ │ │ └── UnprovidedServiceException.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── integration │ │ └── Bundle.properties ├── Jogl213Lib │ ├── pom.xml │ └── src │ │ └── main │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── jogl213lib │ │ └── Bundle.properties ├── Jogl224Lib │ ├── pom.xml │ └── src │ │ └── main │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── jogl224lib │ │ └── Bundle.properties ├── LMDataBrowser │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── lm │ │ │ ├── actions │ │ │ ├── DataSetsMenuAction.java │ │ │ ├── ImportFilesAction.java │ │ │ ├── LaunchFijiAction.java │ │ │ ├── LaunchVaa3dAction.java │ │ │ ├── LaunchVvdAction.java │ │ │ └── context │ │ │ │ ├── AddRelatedItemsAction.java │ │ │ │ ├── BaseOpenExternallyAction.java │ │ │ │ ├── ChangeSampleCompressionAction.java │ │ │ │ ├── DownloadAction.java │ │ │ │ ├── MarkSamplesForReprocessingAction.java │ │ │ │ ├── MergeSelectedNeuronsAction.java │ │ │ │ ├── OpenInDefaultAppAction.java │ │ │ │ ├── OpenInFijiViewerAction.java │ │ │ │ ├── OpenInFinderAction.java │ │ │ │ ├── OpenInNeuronAnnotatorAction.java │ │ │ │ ├── OpenInVaa3d3dViewAction.java │ │ │ │ ├── OpenInVaa3dTriViewAction.java │ │ │ │ ├── OpenInVvdNAPluginAction.java │ │ │ │ ├── OpenInVvdViewerAction.java │ │ │ │ ├── OpenSeparationInNewViewerAction.java │ │ │ │ ├── PurgeAndBlockAction.java │ │ │ │ ├── RemoveSecondaryDataAction.java │ │ │ │ ├── ReportProblemAction.java │ │ │ │ └── ViewDataSetSettingsAction.java │ │ │ ├── gui │ │ │ └── dialogs │ │ │ │ └── ImportImageFilesDialog.java │ │ │ ├── nodes │ │ │ ├── DataSetNode.java │ │ │ ├── DataSetObjectHandler.java │ │ │ ├── DataSetsNode.java │ │ │ └── DataSetsNodeProvider.java │ │ │ ├── quicksearch │ │ │ ├── LSMSearchProvider.java │ │ │ └── SampleSearchProvider.java │ │ │ └── services │ │ │ └── ImageObjectHandler.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── lm │ │ ├── Bundle.properties │ │ ├── Modes │ │ ├── properties.wsmode │ │ └── properties │ │ │ └── OntologyExplorerTopComponent.wstcref │ │ ├── WindowManager.wswmgr │ │ └── layer.xml ├── LargeVolumeViewer │ ├── pom.xml │ └── src │ │ ├── compression_code.tar │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ └── workstation │ │ │ │ └── gui │ │ │ │ └── large_volume_viewer │ │ │ │ ├── ColorButtonPanel.java │ │ │ │ ├── ComponentUtil.java │ │ │ │ ├── CreateSyntheticTiff.java │ │ │ │ ├── GLCanvasWrapper.java │ │ │ │ ├── GLContextSharer.java │ │ │ │ ├── GLDrawableWrapper.java │ │ │ │ ├── GLJPanelWrapper.java │ │ │ │ ├── HistoryStack.java │ │ │ │ ├── LargeVolumeViewer.java │ │ │ │ ├── LargeVolumeViewerTopComponent.java │ │ │ │ ├── MeasureDecodeTime.java │ │ │ │ ├── MenuItemGenerator.java │ │ │ │ ├── MicronCoordsFormatter.java │ │ │ │ ├── MouseModalWidget.java │ │ │ │ ├── OrthogonalPanel.java │ │ │ │ ├── OrthogonalViewer.java │ │ │ │ ├── PermuteTiff.java │ │ │ │ ├── QuadViewUi.java │ │ │ │ ├── ReticleActor.java │ │ │ │ ├── RubberBand.java │ │ │ │ ├── SliceActor.java │ │ │ │ ├── SliceRenderer.java │ │ │ │ ├── SpinnerCalculationValue.java │ │ │ │ ├── SubdivideVolume.java │ │ │ │ ├── TileOutlineActor.java │ │ │ │ ├── ToolBarIcon.java │ │ │ │ ├── action │ │ │ │ ├── AdvanceZSlicesAction.java │ │ │ │ ├── BacktrackNeuronAction.java │ │ │ │ ├── BasicMouseMode.java │ │ │ │ ├── CenterNextParentAction.java │ │ │ │ ├── ClipboardActionHelper.java │ │ │ │ ├── GenerateCarveoutAction.java │ │ │ │ ├── GoBackZSlicesAction.java │ │ │ │ ├── GoToLocationAction.java │ │ │ │ ├── LargeVolumeSampleDiscoveryAction.java │ │ │ │ ├── MarkCurrentBranchReviewedAction.java │ │ │ │ ├── MicronsToClipboardAction.java │ │ │ │ ├── MouseMode.java │ │ │ │ ├── NextBranchNeuronCamAction.java │ │ │ │ ├── NextZSliceAction.java │ │ │ │ ├── OctreeFilePathToClipboardAction.java │ │ │ │ ├── OpenFolderAction.java │ │ │ │ ├── OrthogonalModeAction.java │ │ │ │ ├── PanMode.java │ │ │ │ ├── PanModeAction.java │ │ │ │ ├── PreviousZSliceAction.java │ │ │ │ ├── RawFileLocToClipboardAction.java │ │ │ │ ├── RecentFileAction.java │ │ │ │ ├── RecentFileList.java │ │ │ │ ├── ResetColorsAction.java │ │ │ │ ├── ResetViewAction.java │ │ │ │ ├── ResetZoomAction.java │ │ │ │ ├── SliceScanAction.java │ │ │ │ ├── TileLocToClipboardAction.java │ │ │ │ ├── TraceMouseModeAction.java │ │ │ │ ├── UndoAction.java │ │ │ │ ├── WheelMode.java │ │ │ │ ├── ZScanMode.java │ │ │ │ ├── ZScanScrollModeAction.java │ │ │ │ ├── ZoomInAction.java │ │ │ │ ├── ZoomMaxAction.java │ │ │ │ ├── ZoomMode.java │ │ │ │ ├── ZoomMouseModeAction.java │ │ │ │ ├── ZoomOutAction.java │ │ │ │ └── ZoomScrollModeAction.java │ │ │ │ ├── activity_logging │ │ │ │ └── ActivityLogHelper.java │ │ │ │ ├── annotation │ │ │ │ ├── AnnotationsConstants.java │ │ │ │ ├── LVVDevPanel.java │ │ │ │ ├── PointRefiner.java │ │ │ │ └── SmartMergeAlgorithms.java │ │ │ │ ├── camera │ │ │ │ ├── BasicObservableCamera3d.java │ │ │ │ └── ObservableCamera3d.java │ │ │ │ ├── controller │ │ │ │ ├── AnnotationManager.java │ │ │ │ ├── QuadViewController.java │ │ │ │ └── TraceMode.java │ │ │ │ ├── listener │ │ │ │ ├── CameraListener.java │ │ │ │ ├── CameraListenerAdapter.java │ │ │ │ ├── CameraPanToListener.java │ │ │ │ ├── MessageListener.java │ │ │ │ ├── MouseWheelModeListener.java │ │ │ │ ├── NextParentListener.java │ │ │ │ ├── PathTraceRequestListener.java │ │ │ │ ├── RepaintListener.java │ │ │ │ ├── UrlLoadListener.java │ │ │ │ └── WorkspaceClosureListener.java │ │ │ │ ├── shader │ │ │ │ ├── AnchorShader.java │ │ │ │ ├── NumeralShader.java │ │ │ │ ├── OutlineShader.java │ │ │ │ ├── PassThroughTextureShader.java │ │ │ │ ├── PathShader.java │ │ │ │ ├── SliceColorShader.java │ │ │ │ └── TracedPathShader.java │ │ │ │ ├── skeleton │ │ │ │ ├── Anchor.java │ │ │ │ ├── AxesActor.java │ │ │ │ ├── DirectionalReferenceAxesActor.java │ │ │ │ ├── DirectionalReferenceAxesShader.java │ │ │ │ ├── ElementDataOffset.java │ │ │ │ ├── GenericVPLinesHelper.java │ │ │ │ ├── Skeleton.java │ │ │ │ ├── SkeletonActor.java │ │ │ │ ├── SkeletonActorModel.java │ │ │ │ ├── SkeletonActorStateUpdater.java │ │ │ │ ├── SkeletonAnchorListener.java │ │ │ │ ├── SkeletonController.java │ │ │ │ ├── TracedPathActor.java │ │ │ │ └── UpdateAnchorListener.java │ │ │ │ └── tracing │ │ │ │ ├── AStar.java │ │ │ │ ├── AnchoredVoxelPath.java │ │ │ │ ├── PathTraceListener.java │ │ │ │ ├── PathTraceRequest.java │ │ │ │ ├── PathTraceToParentRequest.java │ │ │ │ ├── PathTraceToParentWorker.java │ │ │ │ ├── SegmentIndex.java │ │ │ │ ├── TracePath.java │ │ │ │ └── TracedPathSegment.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ ├── controller │ │ │ └── options │ │ │ │ ├── ApplicationPanel.form │ │ │ │ ├── SampleRootPathsPanel.form │ │ │ │ └── map-icon-32.png │ │ │ └── gui │ │ │ ├── full_skeleton_view │ │ │ └── top_component │ │ │ │ └── AnnotationSkeletalViewTopComponent.form │ │ │ ├── large_volume_viewer │ │ │ ├── Bundle.properties │ │ │ ├── Groups │ │ │ │ ├── large_volume_viewer_plugin.wsgrp │ │ │ │ └── large_volume_viewer_plugin │ │ │ │ │ ├── AnnotationSkeletalViewTopComponent.wstcgrp │ │ │ │ │ ├── LargeVolumeViewerTopComponent.wstcgrp │ │ │ │ │ └── Snapshot3dTopComponent.wstcgrp │ │ │ ├── layer.xml │ │ │ ├── shader │ │ │ │ ├── AnchorFrag.glsl │ │ │ │ ├── AnchorVrtx.glsl │ │ │ │ ├── ColorFrag.glsl │ │ │ │ ├── NumeralFrag.glsl │ │ │ │ ├── OutlineFrag.glsl │ │ │ │ ├── OutlineVrtx.glsl │ │ │ │ ├── PassThroughTextureFrag.glsl │ │ │ │ ├── PassThroughTextureVrtx.glsl │ │ │ │ ├── PathFrag.glsl │ │ │ │ ├── PathVrtx.glsl │ │ │ │ ├── TracedPathFrag.glsl │ │ │ │ └── TracedPathVrtx.glsl │ │ │ ├── skeleton │ │ │ │ ├── DirectionalReferenceAxesFrg.glsl │ │ │ │ └── DirectionalReferenceAxesVtx.glsl │ │ │ └── top_component │ │ │ │ └── LargeVolumeViewerTopComponent.form │ │ │ ├── passive_3d │ │ │ ├── shader │ │ │ │ ├── SnapshotFrg.glsl │ │ │ │ └── SnapshotVtx.glsl │ │ │ └── top_component │ │ │ │ └── Snapshot3dTopComponent.form │ │ │ └── task_workflow │ │ │ └── TaskWorkflowViewTopComponentTopComponent.form │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── workstation │ │ ├── LargeVolumeViewerModuleFastTestsSuite.java │ │ ├── controller │ │ └── tileimagery │ │ │ └── generator │ │ │ ├── TestInterleavedIterator.java │ │ │ └── TestRangeIterator.java │ │ ├── gui │ │ └── large_volume_viewer │ │ │ ├── TestTileFormat.java │ │ │ └── tracing │ │ │ └── TestAStar.java │ │ └── octree │ │ └── TestExtractSubvolume.java ├── N5Viewer │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── n5viewer │ │ │ ├── BigDataViewerManager.java │ │ │ ├── BigDataViewerTopComponent.java │ │ │ ├── N5ContainerHandler.java │ │ │ ├── N5ContainerNode.java │ │ │ ├── N5JadeReader.java │ │ │ └── N5TreeNodeNode.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── n5viewer │ │ ├── Bundle.properties │ │ └── images │ │ └── group16.png ├── SceneWindow │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── scenewindow │ │ │ ├── BasicScene.java │ │ │ ├── CameraControlTopComponent.java │ │ │ ├── GLJComponent.java │ │ │ ├── GLJComponentFactory.java │ │ │ ├── Light.java │ │ │ ├── MyJXTaskPane.java │ │ │ ├── MyJXTaskPaneBeanInfo.java │ │ │ ├── ObjDropTargetListener.java │ │ │ ├── OrbitPanZoomInteractor.java │ │ │ ├── Scene.java │ │ │ ├── SceneInteractor.java │ │ │ ├── SceneRenderer.java │ │ │ ├── SceneWindow.java │ │ │ ├── SceneWindowTopComponent.java │ │ │ ├── fps │ │ │ ├── FPSGraph.java │ │ │ ├── FPSWindowTopComponent.java │ │ │ └── FrameTracker.java │ │ │ └── stereo │ │ │ ├── AnaglyphRenderer.java │ │ │ ├── HardwareRenderer.java │ │ │ ├── LeftEyeRenderer.java │ │ │ ├── MonoscopicRenderer.java │ │ │ ├── SideBySideRenderer.java │ │ │ └── StereoRenderer.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── scenewindow │ │ ├── Bundle.properties │ │ ├── CameraControlTopComponent.form │ │ ├── SceneWindowTopComponent.form │ │ ├── Slab0.png │ │ ├── Slab1.png │ │ ├── Slab2.png │ │ ├── camera.gif │ │ ├── crosshair3.png │ │ ├── fps │ │ ├── Bundle.properties │ │ └── FPSWindowTopComponent.form │ │ ├── grab_closed.png │ │ ├── grab_opened.png │ │ ├── rotate_icon.png │ │ ├── scene.png │ │ └── stopwatch1.png ├── SiteHortaCloud │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── site │ │ │ └── hortacloud │ │ │ ├── gui │ │ │ └── StartPage.java │ │ │ ├── quicksearch │ │ │ ├── TmMappedNeuronSearchProvider.java │ │ │ ├── TmSampleSearchProvider.java │ │ │ └── TmWorkspaceSearchProvider.java │ │ │ └── spi │ │ │ └── HortaStartPageProvider.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── site │ │ └── hortacloud │ │ ├── Bundle.properties │ │ └── layer.xml ├── SiteJRC │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── site │ │ │ └── jrc │ │ │ ├── action │ │ │ ├── FlyLineReleasesMenuAction.java │ │ │ └── context │ │ │ │ ├── ApplyPublishingNamesAction.java │ │ │ │ ├── ApplyPublishingNamesActionListener.java │ │ │ │ ├── ChangeDataSetAction.java │ │ │ │ ├── ChangeSlideCodeAction.java │ │ │ │ ├── ConfigureLineReleaseAction.java │ │ │ │ ├── StageForPublishingAction.java │ │ │ │ ├── SyncWithSAGEAction.java │ │ │ │ └── ViewLineReleasesAction.java │ │ │ ├── api │ │ │ └── services │ │ │ │ └── LineReleaseObjectHandler.java │ │ │ ├── gui │ │ │ ├── StartPage.java │ │ │ └── dialogs │ │ │ │ ├── LineReleaseDialog.java │ │ │ │ ├── LineReleaseListDialog.java │ │ │ │ └── StageForPublishingDialog.java │ │ │ ├── nodes │ │ │ ├── FlyLineReleaseNode.java │ │ │ ├── FlyLineReleasesNode.java │ │ │ └── FlyLineReleasesNodeProvider.java │ │ │ ├── spi │ │ │ └── JaneliaStartPageProvider.java │ │ │ └── util │ │ │ └── SiteUtils.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── site │ │ └── jrc │ │ └── Bundle.properties ├── Viewer3D │ ├── pom.xml │ └── src │ │ └── main │ │ ├── java │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ ├── ffmpeg │ │ │ ├── ByteGatherAcceptor.java │ │ │ ├── FFMPGByteAcceptor.java │ │ │ ├── FFMpegLoader.java │ │ │ ├── Frame.java │ │ │ ├── H5JLoader.java │ │ │ ├── ImageStack.java │ │ │ └── PPMFileAcceptor.java │ │ │ ├── geom │ │ │ ├── BoundingBox3d.java │ │ │ ├── CoordinateAxis.java │ │ │ ├── ParametrizedLine.java │ │ │ ├── Quaternion.java │ │ │ ├── Rotation3d.java │ │ │ ├── SizedVector.java │ │ │ ├── Transform3d.java │ │ │ ├── UnitVec3.java │ │ │ └── Vec3.java │ │ │ ├── gui │ │ │ ├── FullScreenMode.java │ │ │ ├── TrackballInteractor.java │ │ │ ├── camera │ │ │ │ ├── BasicCamera3d.java │ │ │ │ ├── BasicObservableCamera3d.java │ │ │ │ ├── Camera3d.java │ │ │ │ └── ObservableCamera3d.java │ │ │ ├── opengl │ │ │ │ ├── CameraScreenGeometry.java │ │ │ │ ├── CompositeGLActor.java │ │ │ │ ├── GL2Adapter.java │ │ │ │ ├── GL2AdapterFactory.java │ │ │ │ ├── GL3Actor.java │ │ │ │ ├── GLActor.java │ │ │ │ ├── GLActorContext.java │ │ │ │ ├── GLError.java │ │ │ │ ├── GLLightingState.java │ │ │ │ ├── GLMaterialState.java │ │ │ │ ├── GLMatrix.java │ │ │ │ ├── GLMatrixState.java │ │ │ │ ├── GLOrthoCamera.java │ │ │ │ ├── GLResource.java │ │ │ │ ├── GLSceneComposer.java │ │ │ │ ├── LightingActor.java │ │ │ │ ├── MeshActor.java │ │ │ │ ├── MeshGroupActor.java │ │ │ │ ├── PolygonalMesh.java │ │ │ │ ├── SolidBackgroundActor.java │ │ │ │ ├── VertexBuffer.java │ │ │ │ ├── demo │ │ │ │ │ ├── GourdDemo.java │ │ │ │ │ ├── TeapotDemo.java │ │ │ │ │ └── TestSrgbFramebuffer.java │ │ │ │ ├── shader │ │ │ │ │ ├── BasicShader.java │ │ │ │ │ ├── Mesh120Shader.java │ │ │ │ │ ├── Mesh150Shader.java │ │ │ │ │ └── SolidColor120Shader.java │ │ │ │ └── stereo3d │ │ │ │ │ ├── AnaglyphGreenMagentaStereoMode.java │ │ │ │ │ ├── AnaglyphRedCyanStereoMode.java │ │ │ │ │ ├── BasicStereoMode.java │ │ │ │ │ ├── HardwareStereoMode.java │ │ │ │ │ ├── LeftEyeStereoMode.java │ │ │ │ │ ├── LeftRightStereoMode.java │ │ │ │ │ ├── MonoStereoMode.java │ │ │ │ │ ├── RightEyeStereoMode.java │ │ │ │ │ ├── RowInterleavedStereoMode.java │ │ │ │ │ ├── StereoMode.java │ │ │ │ │ └── StereoModeChooser.java │ │ │ ├── static_view │ │ │ │ ├── AbstractVolumeBrick.java │ │ │ │ ├── RGBExcludableVolumeBrick.java │ │ │ │ └── shader │ │ │ │ │ └── RGBExcludableShader.java │ │ │ └── viewer3d │ │ │ │ ├── ActorRenderer.java │ │ │ │ ├── BaseGLViewer.java │ │ │ │ ├── BaseRenderer.java │ │ │ │ ├── CropCoordSet.java │ │ │ │ ├── DirectionalAxis.java │ │ │ │ ├── MeshViewContext.java │ │ │ │ ├── Mip3d.java │ │ │ │ ├── MipRenderer.java │ │ │ │ ├── OcclusiveRenderer.java │ │ │ │ ├── OcclusiveViewer.java │ │ │ │ ├── OpenGLUtils.java │ │ │ │ ├── ResetPositionerI.java │ │ │ │ ├── TeapotActor.java │ │ │ │ ├── Viewer3d.java │ │ │ │ ├── ViewportGL.java │ │ │ │ ├── VolumeBrickActorBuilder.java │ │ │ │ ├── VolumeBrickFactory.java │ │ │ │ ├── VolumeBrickI.java │ │ │ │ ├── VolumeDataAcceptor.java │ │ │ │ ├── VolumeLoader.java │ │ │ │ ├── VolumeModel.java │ │ │ │ ├── axes │ │ │ │ ├── AxesActor.java │ │ │ │ ├── AxisIteration.java │ │ │ │ └── Geometry.java │ │ │ │ ├── buffering │ │ │ │ └── VtxCoordBufMgr.java │ │ │ │ ├── error_trap │ │ │ │ └── JaneliaDebugGL2.java │ │ │ │ ├── interfaces │ │ │ │ ├── AwtActor.java │ │ │ │ ├── Viewport.java │ │ │ │ └── VolumeImage3d.java │ │ │ │ ├── learning │ │ │ │ ├── RectSolid.java │ │ │ │ └── Rubics.java │ │ │ │ ├── loader │ │ │ │ ├── LociTextureBuilder.java │ │ │ │ ├── TextureDataBuilder.java │ │ │ │ ├── TifTextureBuilder.java │ │ │ │ └── VolumeLoaderI.java │ │ │ │ ├── masking │ │ │ │ ├── MaskBuilderI.java │ │ │ │ ├── RenderMappingI.java │ │ │ │ └── VolumeDataI.java │ │ │ │ ├── matrix_support │ │ │ │ ├── MatrixManager.java │ │ │ │ └── ViewMatrixSupport.java │ │ │ │ ├── mesh │ │ │ │ ├── MeshRenderer.java │ │ │ │ ├── MeshViewer.java │ │ │ │ ├── actor │ │ │ │ │ ├── AttributeManagerBufferUploader.java │ │ │ │ │ ├── BufferStateException.java │ │ │ │ │ ├── BufferUploader.java │ │ │ │ │ ├── FewVoxelVtxAttribMgr.java │ │ │ │ │ └── MeshDrawActor.java │ │ │ │ └── shader │ │ │ │ │ └── MeshDrawShader.java │ │ │ │ ├── picking │ │ │ │ ├── IdCoder.java │ │ │ │ ├── IdCoderProvider.java │ │ │ │ └── RenderedIdPicker.java │ │ │ │ ├── renderable │ │ │ │ └── RenderableBean.java │ │ │ │ ├── resolver │ │ │ │ ├── CacheFileResolver.java │ │ │ │ ├── FileResolver.java │ │ │ │ └── TrivialFileResolver.java │ │ │ │ ├── scaled_image │ │ │ │ └── ScaledImage.java │ │ │ │ ├── shader │ │ │ │ ├── AbstractShader.java │ │ │ │ ├── TexturedShader.java │ │ │ │ └── VoxelRayShader.java │ │ │ │ ├── text │ │ │ │ ├── AxisLabel.java │ │ │ │ ├── FontInfo.java │ │ │ │ └── TextTextureMediator.java │ │ │ │ ├── texture │ │ │ │ ├── MaskTextureDataBean.java │ │ │ │ ├── RenderMapTextureBean.java │ │ │ │ ├── TextureDataBean.java │ │ │ │ ├── TextureDataI.java │ │ │ │ └── TextureMediator.java │ │ │ │ └── volume_builder │ │ │ │ ├── PiecewiseVolumeDataBean.java │ │ │ │ ├── VolumeDataBean.java │ │ │ │ └── VolumeDataChunk.java │ │ │ ├── image │ │ │ └── stream │ │ │ │ ├── PassThroughInputStream.java │ │ │ │ ├── Pbd16InputStream.java │ │ │ │ ├── Pbd8InputStream.java │ │ │ │ ├── PbdInputStream.java │ │ │ │ ├── PbdMyers1InputStream.java │ │ │ │ └── V3dRawImageStream.java │ │ │ ├── img_3d_loader │ │ │ ├── AbstractVolumeFileLoader.java │ │ │ ├── ByteArrayLoader.java │ │ │ ├── ByteFrequencyDumper.java │ │ │ ├── FileByteSource.java │ │ │ ├── FileStreamSource.java │ │ │ ├── H264FileLoader.java │ │ │ ├── H265FileLoader.java │ │ │ ├── H26nFileLoadHelper.java │ │ │ ├── LoaderSubsetHelper.java │ │ │ ├── LociFileLoader.java │ │ │ ├── LsmFileLoader.java │ │ │ ├── MpegFileLoader.java │ │ │ ├── TifVolumeFileLoader.java │ │ │ ├── V3dByteReader.java │ │ │ ├── V3dMaskFileLoader.java │ │ │ ├── V3dSignalFileLoader.java │ │ │ └── VolumeFileLoaderI.java │ │ │ ├── mesh_loader │ │ │ ├── AxialNormalDirection.java │ │ │ ├── BufferPackager.java │ │ │ ├── EnclosedVoxelVertexFactory.java │ │ │ ├── NormalCompositor.java │ │ │ ├── RenderBuffersBean.java │ │ │ ├── Triangle.java │ │ │ ├── TriangleSource.java │ │ │ ├── VertexAttributeSourceI.java │ │ │ ├── VertexExporterI.java │ │ │ ├── VertexInfoBean.java │ │ │ ├── VertexInfoKey.java │ │ │ ├── VoxelInfoBean.java │ │ │ ├── VoxelInfoKey.java │ │ │ └── wavefront_obj │ │ │ │ └── OBJWriter.java │ │ │ ├── octree │ │ │ ├── ZoomLevel.java │ │ │ └── ZoomedVoxelIndex.java │ │ │ ├── signal │ │ │ ├── BasicSignalSlot.java │ │ │ ├── BasicSignalSlot1.java │ │ │ ├── Signal.java │ │ │ ├── Signal1.java │ │ │ ├── Slot.java │ │ │ └── Slot1.java │ │ │ ├── swc │ │ │ ├── ImportExportSWCExchanger.java │ │ │ ├── MatrixDrivenSWCExchanger.java │ │ │ ├── SWCData.java │ │ │ ├── SWCDataConverter.java │ │ │ ├── SWCDirectorySource.java │ │ │ └── SWCNode.java │ │ │ └── units │ │ │ ├── BaseDimension.java │ │ │ ├── Displacement2d.java │ │ │ ├── Displacement3d.java │ │ │ ├── Length.java │ │ │ ├── PhysicalDimension.java │ │ │ ├── PhysicalQuantity.java │ │ │ ├── PhysicalUnit.java │ │ │ ├── QuantityImpl.java │ │ │ ├── SI.java │ │ │ └── SIUnit.java │ │ ├── nbm │ │ └── manifest.mf │ │ └── resources │ │ ├── font │ │ ├── monospaced_plain_15_axistickbkbgrnd.png │ │ ├── monospaced_plain_15_axistickbkbgrnd.properties │ │ ├── monospaced_plain_15_axistickwtbgrnd.png │ │ └── monospaced_plain_15_axistickwtbgrnd.properties │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── gui │ │ ├── opengl │ │ └── shader │ │ │ ├── Mesh120Frag.glsl │ │ │ ├── Mesh120Vrtx.glsl │ │ │ ├── Mesh150Frag.glsl │ │ │ ├── Mesh150Vrtx.glsl │ │ │ ├── SolidColor120Frag.glsl │ │ │ └── SolidColor120Vrtx.glsl │ │ ├── static_view │ │ └── shader │ │ │ ├── RGBExcludableFrg.glsl │ │ │ └── RGBExcludableVtx.glsl │ │ └── viewer3d │ │ ├── Bundle.properties │ │ ├── mesh │ │ └── shader │ │ │ ├── MeshDrawFrg.glsl │ │ │ ├── MeshDrawSpecularFrg.glsl │ │ │ ├── MeshDrawSpecularVtx.glsl │ │ │ └── MeshDrawVtx.glsl │ │ └── shader │ │ ├── ColorFilterFrg.glsl │ │ ├── ColorFilterVtx.glsl │ │ ├── PassThroughFrg.glsl │ │ ├── PassThroughVtx.glsl │ │ ├── VoxelRayFrg.glsl │ │ └── VoxelRayVtx.glsl ├── ViewerController │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ └── workstation │ │ │ │ └── controller │ │ │ │ ├── AnnotationCategory.java │ │ │ │ ├── ComponentUtil.java │ │ │ │ ├── GlobalViewerController.java │ │ │ │ ├── LoadTimer.java │ │ │ │ ├── NeuronManager.java │ │ │ │ ├── NeuronVertexSpatialIndex.java │ │ │ │ ├── SpatialIndexManager.java │ │ │ │ ├── TmViewerManager.java │ │ │ │ ├── TransactionManager.java │ │ │ │ ├── ViewerEventBus.java │ │ │ │ ├── access │ │ │ │ ├── LoadedWorkspaceCreator.java │ │ │ │ ├── ModelTranslation.java │ │ │ │ ├── ProjectInitFacade.java │ │ │ │ ├── ProjectInitFacadeImpl.java │ │ │ │ ├── RefreshHandler.java │ │ │ │ ├── TiledMicroscopeDomainMgr.java │ │ │ │ ├── TiledMicroscopeObjectHandler.java │ │ │ │ └── TiledMicroscopeRestClient.java │ │ │ │ ├── action │ │ │ │ ├── AddEditNoteAction.java │ │ │ │ ├── AddProblemEndNoteAction.java │ │ │ │ ├── AddTracedEndNoteAction.java │ │ │ │ ├── AddUnique1NoteAction.java │ │ │ │ ├── AddUnique2NoteAction.java │ │ │ │ ├── AnnotationSetRadiusAction.java │ │ │ │ ├── ChangeNeuronOwnerAction.java │ │ │ │ ├── CommonActions.java │ │ │ │ ├── CreateWorkspaceAction.java │ │ │ │ ├── DeleteHortaWorkspaceAction.java │ │ │ │ ├── DeleteNeuronSubtreeAction.java │ │ │ │ ├── DeleteVertexLinkAction.java │ │ │ │ ├── EditAction.java │ │ │ │ ├── EditSamplePathAction.java │ │ │ │ ├── GenerateTaskReviewAction.java │ │ │ │ ├── GoToLocationAction.java │ │ │ │ ├── ImportExportColorModelAction.java │ │ │ │ ├── LoadMeshAction.java │ │ │ │ ├── MergeNeuronsAction.java │ │ │ │ ├── NeuronChooseColorAction.java │ │ │ │ ├── NeuronCreateAction.java │ │ │ │ ├── NeuronDeleteAction.java │ │ │ │ ├── NeuronExportAllAction.java │ │ │ │ ├── NeuronExportCurrentAction.java │ │ │ │ ├── NeuronHideAction.java │ │ │ │ ├── NeuronHideOthersAction.java │ │ │ │ ├── NeuronNamePrompter.java │ │ │ │ ├── NeuronRenameAction.java │ │ │ │ ├── NeuronSetRadiusAction.java │ │ │ │ ├── NeuronShowAction.java │ │ │ │ ├── NeuronShowOthersAction.java │ │ │ │ ├── NeuronTagsAction.java │ │ │ │ ├── NeuronToggleAction.java │ │ │ │ ├── NewTiledMicroscopeSampleAction.java │ │ │ │ ├── OpenDeepLinkAction.java │ │ │ │ ├── OpenTmSampleOrWorkspaceAction.java │ │ │ │ ├── PathCorrectionKeyListener.java │ │ │ │ ├── RedoNeuronChangeAction.java │ │ │ │ ├── RerootNeuronAction.java │ │ │ │ ├── SaveTiledMicroscopeSampleAction.java │ │ │ │ ├── ShowWorkspaceInfo.java │ │ │ │ ├── SplitNeuronAtVertexAction.java │ │ │ │ ├── SplitNeuronBetweenVerticesAction.java │ │ │ │ ├── SwcExport.java │ │ │ │ ├── TransferNeuriteAction.java │ │ │ │ ├── UndoNeuronChangeAction.java │ │ │ │ └── WorkspaceSaveAsAction.java │ │ │ │ ├── color_slider │ │ │ │ ├── ColorChannelRangeModel.java │ │ │ │ ├── ColorChannelWidget.java │ │ │ │ ├── SliderPanel.java │ │ │ │ ├── TextColorSlider.java │ │ │ │ ├── UglyColorSlider.java │ │ │ │ ├── UglyColorSliderUI.java │ │ │ │ └── UnmixingParameters.java │ │ │ │ ├── dialog │ │ │ │ ├── AddEditNoteDialog.java │ │ │ │ ├── ChangeNeuronOwnerDialog.java │ │ │ │ ├── CommonDialogItems.java │ │ │ │ ├── EditWorkspaceNameDialog.java │ │ │ │ ├── NeuronColorDialog.java │ │ │ │ ├── NeuronGroupsDialog.java │ │ │ │ ├── NeuronHistoryDialog.java │ │ │ │ ├── NewTiledMicroscopeSampleDialog.java │ │ │ │ └── SaveOrOpenDeepLinkDialog.java │ │ │ │ ├── eventbus │ │ │ │ ├── AnchoredPathCreateEvent.java │ │ │ │ ├── AnchoredPathDeleteEvent.java │ │ │ │ ├── AnchoredPathEvent.java │ │ │ │ ├── AnimationEvent.java │ │ │ │ ├── AnnotationCreateEvent.java │ │ │ │ ├── AnnotationDeleteEvent.java │ │ │ │ ├── AnnotationEvent.java │ │ │ │ ├── AnnotationMovedBackEvent.java │ │ │ │ ├── AnnotationNotesUpdateEvent.java │ │ │ │ ├── AnnotationParentReparentedEvent.java │ │ │ │ ├── AnnotationRadiusUpdateEvent.java │ │ │ │ ├── AnnotationUpdateEvent.java │ │ │ │ ├── ColorModelUpdateEvent.java │ │ │ │ ├── CreateNeuronReviewEvent.java │ │ │ │ ├── LoadEvent.java │ │ │ │ ├── LoadImageryEvent.java │ │ │ │ ├── LoadMetadataEvent.java │ │ │ │ ├── LoadNeuronsEvent.java │ │ │ │ ├── LoadProjectEvent.java │ │ │ │ ├── MeshCreateEvent.java │ │ │ │ ├── MeshDeleteEvent.java │ │ │ │ ├── MeshUpdateEvent.java │ │ │ │ ├── MeshVisibilityEvent.java │ │ │ │ ├── MovieEvent.java │ │ │ │ ├── NeuronBranchReviewedEvent.java │ │ │ │ ├── NeuronCreateEvent.java │ │ │ │ ├── NeuronDeleteEvent.java │ │ │ │ ├── NeuronEvent.java │ │ │ │ ├── NeuronHideEvent.java │ │ │ │ ├── NeuronHistoryEvent.java │ │ │ │ ├── NeuronOwnerChangedEvent.java │ │ │ │ ├── NeuronQueueChangeEvent.java │ │ │ │ ├── NeuronSpatialFilterUpdateEvent.java │ │ │ │ ├── NeuronTagsUpdateEvent.java │ │ │ │ ├── NeuronUnhideEvent.java │ │ │ │ ├── NeuronUpdateEvent.java │ │ │ │ ├── PostSampleLoadEvent.java │ │ │ │ ├── SampleCreateEvent.java │ │ │ │ ├── SampleDeleteEvent.java │ │ │ │ ├── SampleEditEvent.java │ │ │ │ ├── SampleEvent.java │ │ │ │ ├── SampleUpdateEvent.java │ │ │ │ ├── SelectionAnnotationEvent.java │ │ │ │ ├── SelectionEvent.java │ │ │ │ ├── SelectionMeshEvent.java │ │ │ │ ├── SelectionNeuronsEvent.java │ │ │ │ ├── SharedNeuronUpdateEvent.java │ │ │ │ ├── UnloadProjectEvent.java │ │ │ │ ├── ViewEvent.java │ │ │ │ ├── ViewerCloseEvent.java │ │ │ │ ├── ViewerEvent.java │ │ │ │ ├── ViewerOpenEvent.java │ │ │ │ ├── WorkflowEvent.java │ │ │ │ ├── WorkspaceCreateEvent.java │ │ │ │ ├── WorkspaceDeleteEvent.java │ │ │ │ ├── WorkspaceEvent.java │ │ │ │ └── WorkspaceUpdateEvent.java │ │ │ │ ├── listener │ │ │ │ ├── AnnotationSelectionListener.java │ │ │ │ ├── BackgroundAnnotationListener.java │ │ │ │ ├── CameraPanToListener.java │ │ │ │ ├── ChannelColorChangeListener.java │ │ │ │ ├── ColorListener.java │ │ │ │ ├── ColorModelInitListener.java │ │ │ │ ├── ColorModelListener.java │ │ │ │ ├── EditNoteRequestedListener.java │ │ │ │ ├── GlobalAnnotationAdapter.java │ │ │ │ ├── GlobalAnnotationListener.java │ │ │ │ ├── GlobalNeuronSpatialFilterListener.java │ │ │ │ ├── LoadStatusListener.java │ │ │ │ ├── NeuronCreationListener.java │ │ │ │ ├── NeuronDeletionListener.java │ │ │ │ ├── NeuronSelectedListener.java │ │ │ │ ├── NeuronSelectionListener.java │ │ │ │ ├── NeuronUpdateListener.java │ │ │ │ ├── NeuronVertexCreationListener.java │ │ │ │ ├── NeuronVertexDeletionListener.java │ │ │ │ ├── NeuronVertexUpdateListener.java │ │ │ │ ├── NeuronWorkspaceChangeListener.java │ │ │ │ ├── NotesUpdateListener.java │ │ │ │ ├── StatusUpdateListener.java │ │ │ │ ├── TaskReviewListener.java │ │ │ │ ├── TmGeoAnnotationAnchorListener.java │ │ │ │ ├── TolerantMouseClickListener.java │ │ │ │ ├── UnmixingListener.java │ │ │ │ ├── ViewStateListener.java │ │ │ │ └── VolumeLoadListener.java │ │ │ │ ├── model │ │ │ │ ├── DeepLink.java │ │ │ │ ├── DefaultNeuron.java │ │ │ │ ├── IdSource.java │ │ │ │ ├── TmHistoricalEvent.java │ │ │ │ ├── TmHistory.java │ │ │ │ ├── TmModelManager.java │ │ │ │ ├── TmReviewState.java │ │ │ │ ├── TmSelectionState.java │ │ │ │ ├── TmViewState.java │ │ │ │ ├── annotations │ │ │ │ │ └── neuron │ │ │ │ │ │ ├── AnnotationGeometry.java │ │ │ │ │ │ ├── FilteredAnnotationModel.java │ │ │ │ │ │ ├── InterestingAnnotation.java │ │ │ │ │ │ ├── NeuronModel.java │ │ │ │ │ │ ├── NeuronModelAdapter.java │ │ │ │ │ │ ├── PredefinedNote.java │ │ │ │ │ │ ├── RandomNeuronGenerator.java │ │ │ │ │ │ ├── VertexCollectionWithNeuron.java │ │ │ │ │ │ └── VertexWithNeuron.java │ │ │ │ └── color │ │ │ │ │ ├── ChannelColorModel.java │ │ │ │ │ ├── ColorSwatch.java │ │ │ │ │ └── ImageColorModel.java │ │ │ │ ├── nodes │ │ │ │ ├── TmSampleChildFactory.java │ │ │ │ ├── TmSampleNode.java │ │ │ │ └── TmWorkspaceNode.java │ │ │ │ ├── options │ │ │ │ ├── ApplicationOptionsPanelController.java │ │ │ │ └── ApplicationPanel.java │ │ │ │ ├── scripts │ │ │ │ └── spatialfilter │ │ │ │ │ ├── BoundingBoxSpatialFilter.java │ │ │ │ │ ├── BoundingBoxSpatialIndex.java │ │ │ │ │ ├── NeuronFilterAction.java │ │ │ │ │ ├── NeuronFilterDialog.java │ │ │ │ │ ├── NeuronMessageConstants.java │ │ │ │ │ ├── NeuronProximitySpatialIndex.java │ │ │ │ │ ├── NeuronSelectionSpatialFilter.java │ │ │ │ │ ├── NeuronSpatialFilter.java │ │ │ │ │ └── NeuronUpdates.java │ │ │ │ ├── task_workflow │ │ │ │ ├── NeuronTree.java │ │ │ │ ├── PointDisplay.java │ │ │ │ ├── ReviewGroup.java │ │ │ │ ├── ReviewGroupNode.java │ │ │ │ ├── ReviewGroupPropertyEditor.java │ │ │ │ ├── ReviewListNode.java │ │ │ │ ├── ReviewPoint.java │ │ │ │ ├── ReviewPointNode.java │ │ │ │ ├── ReviewPointPropertyEditor.java │ │ │ │ ├── ReviewTaskNavigator.java │ │ │ │ ├── TaskDataSourceI.java │ │ │ │ ├── TaskWorkflowViewLauncher.java │ │ │ │ ├── TaskWorkflowViewTopComponent.java │ │ │ │ ├── actions │ │ │ │ │ ├── NextPointReviewAction.java │ │ │ │ │ └── PreviousPointReviewAction.java │ │ │ │ └── tasks │ │ │ │ │ └── BaseTask.java │ │ │ │ ├── tileimagery │ │ │ │ ├── AbstractTextureLoadAdapter.java │ │ │ │ ├── BlockTiffOctreeLoadAdapter.java │ │ │ │ ├── BlockTiffOctreeTileLoaderProvider.java │ │ │ │ ├── CachedBlockTiffOctreeLoadAdapter.java │ │ │ │ ├── CachedRenderedVolumeLocation.java │ │ │ │ ├── ChannelBrightnessStats.java │ │ │ │ ├── ExtractOctreeSubvolume.java │ │ │ │ ├── FileBasedBlockTiffOctreeLoadAdapter.java │ │ │ │ ├── FileBasedOctreeMetadataSniffer.java │ │ │ │ ├── FileBasedTileLoader.java │ │ │ │ ├── HistoryCache.java │ │ │ │ ├── ImageBrightnessStats.java │ │ │ │ ├── OsFilePathRemapper.java │ │ │ │ ├── PersistentCache.java │ │ │ │ ├── PyramidTexture.java │ │ │ │ ├── RenderedVolumeFileKey.java │ │ │ │ ├── RenderedVolumeFileKeyBuilder.java │ │ │ │ ├── RenderedVolumeFileToProxyMapper.java │ │ │ │ ├── RenderedVolumeFileToProxyMapperImpl.java │ │ │ │ ├── RestServiceBasedBlockTiffOctreeLoadAdapter.java │ │ │ │ ├── SharedVolumeImage.java │ │ │ │ ├── Subvolume.java │ │ │ │ ├── SubvolumeProvider.java │ │ │ │ ├── Texture2dGL.java │ │ │ │ ├── TextureCache.java │ │ │ │ ├── TextureData2d.java │ │ │ │ ├── TextureData2dCacheLoader.java │ │ │ │ ├── TextureData2dGL.java │ │ │ │ ├── TextureDataI.java │ │ │ │ ├── TextureLoadWorker.java │ │ │ │ ├── TexturePreFetcher.java │ │ │ │ ├── ThreadUtils.java │ │ │ │ ├── Tile2d.java │ │ │ │ ├── TileBoundingBox.java │ │ │ │ ├── TileConsumer.java │ │ │ │ ├── TileFormat.java │ │ │ │ ├── TileIndex.java │ │ │ │ ├── TileLoader.java │ │ │ │ ├── TileServer.java │ │ │ │ ├── TileSet.java │ │ │ │ ├── TileStackCacheController.java │ │ │ │ ├── TileStackCacheStatusPanel.java │ │ │ │ ├── TileStackOctreeLoadAdapter.java │ │ │ │ ├── TileTexture.java │ │ │ │ ├── URLBasedTileLoader.java │ │ │ │ ├── ViewBoundingBox.java │ │ │ │ ├── ViewTileManager.java │ │ │ │ ├── VolumeCache.java │ │ │ │ ├── VoxelPosition.java │ │ │ │ ├── generator │ │ │ │ │ ├── InterleavedIterator.java │ │ │ │ │ ├── LodGenerator.java │ │ │ │ │ ├── MinResSliceGenerator.java │ │ │ │ │ ├── NextSliceUmbrellaGenerator.java │ │ │ │ │ ├── PreviousSliceUmbrellaGenerator.java │ │ │ │ │ ├── RangeIterator.java │ │ │ │ │ ├── SliceGenerator.java │ │ │ │ │ └── UmbrellaSliceGenerator.java │ │ │ │ └── raster │ │ │ │ │ ├── ByteRasterSubvolume.java │ │ │ │ │ ├── IntensityFormat.java │ │ │ │ │ ├── PixelIndex.java │ │ │ │ │ ├── RasterIndex2d.java │ │ │ │ │ ├── RasterIndex3d.java │ │ │ │ │ ├── RasterSubvolume.java │ │ │ │ │ ├── RasterVolume.java │ │ │ │ │ └── VoxelIndex.java │ │ │ │ ├── tools │ │ │ │ └── NoteExporter.java │ │ │ │ ├── util │ │ │ │ └── QueuedWorkThread.java │ │ │ │ └── widgets │ │ │ │ ├── SimpleIcons.java │ │ │ │ ├── ToolButton.java │ │ │ │ └── ToolModeButton.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ ├── images │ │ │ ├── clear_all.png │ │ │ ├── closed_eye.png │ │ │ ├── control_fastforward_blue.png │ │ │ ├── control_pause_blue.png │ │ │ ├── control_rewind_blue.png │ │ │ ├── delete.png │ │ │ ├── eye.png │ │ │ ├── jet_icon.png │ │ │ ├── lock.png │ │ │ ├── lock_unlock.png │ │ │ ├── next_item.png │ │ │ ├── next_node.png │ │ │ ├── open_action.png │ │ │ ├── play.png │ │ │ ├── plus-button.png │ │ │ ├── prev_node.png │ │ │ ├── previous_item.png │ │ │ ├── review_cleared.png │ │ │ ├── review_completed.png │ │ │ └── select_all.png │ │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── controller │ │ │ └── Bundle.properties │ │ └── test │ │ └── groovy │ │ └── org.janelia.workstation │ │ └── controller │ │ └── TmViewerManagerSpec.groovy ├── ViewerInfoPanel │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── java │ │ │ └── org │ │ │ │ └── janelia │ │ │ │ └── workstation │ │ │ │ └── infopanel │ │ │ │ ├── AnnotationPanel.java │ │ │ │ ├── FilteredAnnotationList.java │ │ │ │ ├── InfoPanelTopComponent.java │ │ │ │ ├── NeuronContextMenu.java │ │ │ │ ├── PanelController.java │ │ │ │ ├── SwcDirAndFileFilter.java │ │ │ │ ├── SwcDirListFilter.java │ │ │ │ ├── WorkspaceInfoPanel.java │ │ │ │ ├── WorkspaceNeuronList.java │ │ │ │ ├── action │ │ │ │ ├── BulkChangeNeuronColorAction.java │ │ │ │ ├── BulkChangeNeuronOwnerAction.java │ │ │ │ ├── BulkExportNeuronAction.java │ │ │ │ ├── BulkNeuronTagAction.java │ │ │ │ ├── ImportSWCAction.java │ │ │ │ ├── ImportSWCFolderAction.java │ │ │ │ ├── MessageSnooperAction.java │ │ │ │ ├── NeuronListProvider.java │ │ │ │ └── WorkspaceInformationAction.java │ │ │ │ └── dialog │ │ │ │ └── MessageSnooperDialog.java │ │ ├── nbm │ │ │ └── manifest.mf │ │ └── resources │ │ │ └── org │ │ │ └── janelia │ │ │ └── workstation │ │ │ └── infopanel │ │ │ └── Bundle.properties │ │ └── test │ │ └── groovy │ │ └── org.janelia.workstation │ │ └── infopanel │ │ └── WorkspaceInfoPanelSpec.groovy ├── application │ ├── license.txt │ ├── nbactions.xml │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── app-resources │ │ │ ├── ConfigurationLogic.java │ │ │ ├── bin │ │ │ │ ├── janeliaws │ │ │ │ ├── janeliaws.exe │ │ │ │ └── janeliaws64.exe │ │ │ ├── build.xml │ │ │ ├── janeliaws.icns │ │ │ ├── janeliaws128.png │ │ │ ├── janeliaws48.png │ │ │ ├── launcher.sh │ │ │ ├── nbexec │ │ │ ├── template.xml │ │ │ ├── unix.launcher.properties │ │ │ └── windows.launcher.properties │ │ └── resources │ │ │ ├── Info.plist │ │ │ └── janeliaws.conf │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── ApplicationTest.java ├── application_horta │ ├── license.txt │ ├── nbactions.xml │ ├── pom.xml │ └── src │ │ ├── main │ │ ├── app-resources │ │ │ ├── ConfigurationLogic.java │ │ │ ├── bin │ │ │ │ ├── horta │ │ │ │ ├── horta.exe │ │ │ │ └── horta64.exe │ │ │ ├── build.xml │ │ │ ├── horta.icns │ │ │ ├── horta128.png │ │ │ ├── horta48.png │ │ │ ├── launcher.sh │ │ │ ├── nbexec │ │ │ ├── template.xml │ │ │ ├── unix.launcher.properties │ │ │ └── windows.launcher.properties │ │ └── resources │ │ │ ├── Info.plist │ │ │ └── horta.conf │ │ └── test │ │ └── java │ │ └── org │ │ └── janelia │ │ └── workstation │ │ └── ApplicationTest.java └── branding │ ├── pom.xml │ └── src │ └── main │ ├── nbm-branding │ ├── core │ │ └── core.jar │ │ │ └── org │ │ │ └── netbeans │ │ │ └── core │ │ │ ├── startup │ │ │ ├── Bundle.properties │ │ │ ├── about.png │ │ │ ├── frame.gif │ │ │ ├── frame32.gif │ │ │ ├── frame48.gif │ │ │ └── splash.gif │ │ │ └── ui │ │ │ └── Bundle.properties │ └── modules │ │ ├── ext │ │ └── updater.jar │ │ │ └── org │ │ │ └── netbeans │ │ │ └── updater │ │ │ ├── Bundle.properties │ │ │ └── resources │ │ │ └── updatersplash.gif │ │ ├── org-netbeans-core-windows.jar │ │ └── org │ │ │ └── netbeans │ │ │ └── core │ │ │ └── windows │ │ │ ├── Bundle.properties │ │ │ └── view │ │ │ └── ui │ │ │ └── Bundle.properties │ │ └── org-netbeans-core.jar │ │ └── org │ │ └── netbeans │ │ └── core │ │ └── ui │ │ └── Bundle.properties │ └── nbm │ └── manifest.mf ├── pom.xml └── release.sh /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/.github/ISSUE_TEMPLATE/feature_request.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/general-question.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/.github/ISSUE_TEMPLATE/general-question.md -------------------------------------------------------------------------------- /.github/workflows/maven.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/.github/workflows/maven.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/LICENSE.md -------------------------------------------------------------------------------- /LICENSES-DEPENDENCIES.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/LICENSES-DEPENDENCIES.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/README.md -------------------------------------------------------------------------------- /docs/Development.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/Development.md -------------------------------------------------------------------------------- /docs/H5JFileFormat.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/H5JFileFormat.md -------------------------------------------------------------------------------- /docs/ReleaseProcess.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/ReleaseProcess.md -------------------------------------------------------------------------------- /docs/SamplePipeline.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/SamplePipeline.md -------------------------------------------------------------------------------- /docs/UserManual.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/UserManual.md -------------------------------------------------------------------------------- /docs/distcorrection_1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/distcorrection_1.png -------------------------------------------------------------------------------- /docs/distcorrection_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/distcorrection_2.png -------------------------------------------------------------------------------- /docs/screenshot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/docs/screenshot.png -------------------------------------------------------------------------------- /maven-version-rules.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/maven-version-rules.xml -------------------------------------------------------------------------------- /modules/AdministrationGUI/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/AdministrationGUI/pom.xml -------------------------------------------------------------------------------- /modules/AdministrationGUI/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/AdministrationGUI/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/ColorDepthSearch/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ColorDepthSearch/pom.xml -------------------------------------------------------------------------------- /modules/ColorDepthSearch/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ColorDepthSearch/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/CommonGUI/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/pom.xml -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/java/org/janelia/workstation/common/nodes/EmptyNode.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/java/org/janelia/workstation/common/nodes/EmptyNode.java -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/java/org/janelia/workstation/common/nodes/NodeUtils.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/java/org/janelia/workstation/common/nodes/NodeUtils.java -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/AdminGroup.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/AdminGroup.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/AdminUser.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/AdminUser.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/Green_check.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/Green_check.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/OrthogonalMode.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/OrthogonalMode.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/ParentAnchor16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/ParentAnchor16.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/SkeletonAnchor16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/SkeletonAnchor16.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/SkeletonAnchor8.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/SkeletonAnchor8.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/ZViewMode.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/ZViewMode.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/ano_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/ano_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/ano_small.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/ano_small.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_back.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_back.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_double_left.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_double_left.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_double_right.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_double_right.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_forward.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_forward.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_left.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_left.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_refresh.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_refresh.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/arrow_right.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/arrow_right.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/axes_off.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/axes_off.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/axes_on.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/axes_on.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/background_black.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/background_black.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/background_white.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/background_white.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/beaker.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/beaker.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/block.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/block.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/block_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/block_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/border_dark_normal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/border_dark_normal.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/border_dark_selected.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/border_dark_selected.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/border_normal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/border_normal.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/border_selected.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/border_selected.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/brain.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/brain.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/brick.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/brick.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/brick_grey.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/brick_grey.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/bricks.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/bricks.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/bright_color_save.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/bright_color_save.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/bullet_error.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/bullet_error.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/button_ok_16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/button_ok_16x16.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cancel.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cancel.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cart.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cart.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cart_edit.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cart_edit.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cart_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cart_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cart_medium.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cart_medium.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/center_crosshair.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/center_crosshair.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/chevron-collapse-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/chevron-collapse-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/chevron-expand-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/chevron-expand-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/close.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/close.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/close_red.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/close_red.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cog.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cog.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cog_medium.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cog_medium.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cog_small.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cog_small.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cog_small_anim.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cog_small_anim.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cog_small_anim_orange.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cog_small_anim_orange.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/collapse_all.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/collapse_all.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/color_depth_brain.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/color_depth_brain.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/color_drive_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/color_drive_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/computer.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/computer.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/computer_bw.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/computer_bw.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/computer_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/computer_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_eject_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_eject_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_end_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_end_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_fastforward_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_fastforward_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_pause_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_pause_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_play_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_play_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_rewind_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_rewind_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_start_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_start_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/control_stop_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/control_stop_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/cross.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/cross.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/crosshair.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/crosshair.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/database.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/database.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/database_400.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/database_400.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/decorator_connect.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/decorator_connect.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/decorator_disconnect.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/decorator_disconnect.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/decorator_trash.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/decorator_trash.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/delete.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/delete.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/digits_df2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/digits_df2.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/dim_color_save.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/dim_color_save.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/dna2Animation_trans.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/dna2Animation_trans.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/dna2_trans.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/dna2_trans.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drive_add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drive_add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drive_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drive_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drive_magnify.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drive_magnify.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drop-folder-blue-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drop-folder-blue-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drop-folder-graphite-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drop-folder-graphite-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drop-folder-white-icon-large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drop-folder-white-icon-large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/drop-folder-white-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/drop-folder-white-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/error.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/error.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/error_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/error_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/expand_all.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/expand_all.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fiji.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fiji.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fiji_16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fiji_16.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/file_error.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/file_error.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/file_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/file_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/file_lock.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/file_lock.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/file_missing.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/file_missing.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/find.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/find.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fly_progress.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fly_progress.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fly_start.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fly_start.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/flylight_transparent_no_shadow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/flylight_transparent_no_shadow.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/flyscope.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/flyscope.jpg -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-black-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-black-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-blue-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-blue-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-graphite-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-graphite-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-gray-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-gray-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-green-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-green-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-orange-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-orange-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-purple-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-purple-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-red-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-red-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-white-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-white-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder-yellow-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder-yellow-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_blue_database.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_blue_database.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_blue_key.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_blue_key.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_blue_user.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_blue_user.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_brick.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_brick.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_database.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_database.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_error.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_error.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_explore.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_explore.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_file_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_file_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_files_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_files_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_files_large.xcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_files_large.xcf -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_graphite_palette.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_graphite_palette.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_graphite_palette_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_graphite_palette_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_green.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_green.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_icons.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_icons.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_image.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_image.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_key.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_key.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_large.xcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_large.xcf -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_open.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_open.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_open_page.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_open_page.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_open_page_white.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_open_page_white.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_page.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_page.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_palette.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_palette.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_picture.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_picture.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_purple.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_purple.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_red.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_red.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_star.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_star.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folder_user.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folder_user.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/folders_explorer_medium.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/folders_explorer_medium.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fruit_fly.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fruit_fly.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fruit_fly_small.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fruit_fly_small.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/fruit_fly_small_17.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/fruit_fly_small_17.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/gear_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/gear_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/grab_closed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/grab_closed.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/grab_opened.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/grab_opened.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/group.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/group.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/group_edit.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/group_edit.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/group_gear.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/group_gear.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/image.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/image.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/images-white.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/images-white.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/images.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/images.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/info.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/info.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/information.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/information.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/intersect.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/intersect.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/invert.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/invert.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/jet_icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/jet_icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/keyboard_add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/keyboard_add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/link.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/link.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/link_break.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/link_break.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/loader.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/loader.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/magnifier.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/magnifier.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/magnify_glass.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/magnify_glass.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/magnify_minus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/magnify_minus.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/magnify_minus_cursor.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/magnify_minus_cursor.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/magnify_plus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/magnify_plus.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/magnify_plus_cursor.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/magnify_plus_cursor.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/map-icon-32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/map-icon-32.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/masked_drive_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/masked_drive_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/matrix.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/matrix.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/microscope_400.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/microscope_400.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/monitor.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/monitor.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/monitor_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/monitor_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/mouse_left.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/mouse_left.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/mouse_scroll.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/mouse_scroll.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/movie.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/movie.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/nib.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/nib.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/nib_plus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/nib_plus.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/non_selected_black.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/non_selected_black.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/non_selected_dim.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/non_selected_dim.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/open_action.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/open_action.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/package.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/package.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_copy.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_copy.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_white.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_white.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_white_code.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_white_code.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_white_edit.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_white_edit.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_white_go.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_white_go.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_white_stack.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_white_stack.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/page_white_text.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/page_white_text.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/palette.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/palette.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/parent.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/parent.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/path-blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/path-blue.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/path.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/path.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/plugin.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/plugin.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/properties.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/properties.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/properties_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/properties_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/question_block_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/question_block_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/refresh.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/refresh.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/refresh_spin.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/refresh_spin.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/refresh_static.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/refresh_static.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/resultset_next.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/resultset_next.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/resultset_previous.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/resultset_previous.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/script.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/script.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/script_add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/script_add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/script_edit.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/script_edit.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/search-blue-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/search-blue-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/search-white-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/search-white-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/search-yellow-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/search-yellow-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/search_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/search_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/set.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/set.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/shape_group.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/shape_group.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/shape_handles.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/shape_handles.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/sites-folder-blue-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/sites-folder-blue-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/sites-folder-white-icon-large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/sites-folder-white-icon-large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/sites-folder-white-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/sites-folder-white-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/sort_descending.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/sort_descending.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/spinner.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/spinner.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/split_ad.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/split_ad.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/split_dbd.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/split_dbd.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/swc_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/swc_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/swc_small.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/swc_small.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/table.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/table.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/table_save.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/table_save.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/text_smallcaps.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/text_smallcaps.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/user-folder-blue-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/user-folder-blue-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/user-folder-white-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/user-folder-white-icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/user.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/user.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/user_add.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/user_add.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/user_bw.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/user_bw.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/v3d_16x16x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/v3d_16x16x32.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/v3d_32x32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/v3d_32x32x32.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/v3d_48x48x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/v3d_48x48x32.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/vvd16.svg.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/vvd16.svg.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/white-ball-icone-6188-32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/white-ball-icone-6188-32.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workspace.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workspace.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workspace_large.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workspace_large.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workstationStatus.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workstationStatus.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workstationStatusAnimation.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workstationStatusAnimation.gif -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workstation_32_icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workstation_32_icon.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workstation_logo_white.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workstation_logo_white.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/workstation_splash_screen_grey.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/workstation_splash_screen_grey.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/z_stack.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/z_stack.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/z_stack_down.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/z_stack_down.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/z_stack_down_fast.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/z_stack_down_fast.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/z_stack_up.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/z_stack_up.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/z_stack_up_fast.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/z_stack_up_fast.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/images/zoom.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/images/zoom.png -------------------------------------------------------------------------------- /modules/CommonGUI/src/main/resources/org/janelia/workstation/common/gui/layer.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonGUI/src/main/resources/org/janelia/workstation/common/gui/layer.xml -------------------------------------------------------------------------------- /modules/CommonLibraries/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonLibraries/pom.xml -------------------------------------------------------------------------------- /modules/CommonLibraries/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonLibraries/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/CommonLibraries/src/main/resources/META-INF/services/javax.xml.ws.spi.Provider: -------------------------------------------------------------------------------- 1 | com.sun.xml.internal.ws.spi.ProviderImpl -------------------------------------------------------------------------------- /modules/CommonLibraries/src/main/resources/commons-logging.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonLibraries/src/main/resources/commons-logging.properties -------------------------------------------------------------------------------- /modules/CommonLibraries/src/main/resources/log4j.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/CommonLibraries/src/main/resources/log4j.properties -------------------------------------------------------------------------------- /modules/Core/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/pom.xml -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/it/FlyWorkstation/ws/ConsoleDataService.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/it/FlyWorkstation/ws/ConsoleDataService.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/it/FlyWorkstation/ws/ConsoleObserver.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/it/FlyWorkstation/ws/ConsoleObserver.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/actions/Action.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/actions/Action.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/actions/NodeContext.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/actions/NodeContext.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/actions/ViewerContext.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/actions/ViewerContext.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/AccessManager.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/AccessManager.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/ClientDomainUtils.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/ClientDomainUtils.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/ConnectionMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/ConnectionMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/DomainMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/DomainMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/DomainModel.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/DomainModel.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/FileMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/FileMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/LocalCacheMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/LocalCacheMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/LocalPreferenceMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/LocalPreferenceMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/ServiceMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/ServiceMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/SessionMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/SessionMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/StateMgr.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/StateMgr.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/lifecycle/Shutdown.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/lifecycle/Shutdown.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/lifecycle/Startup.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/lifecycle/Startup.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/api/web/SageRestClient.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/api/web/SageRestClient.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/events/Events.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/events/Events.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/filecache/WebDavFile.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/filecache/WebDavFile.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/keybind/KeyBindings.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/keybind/KeyBindings.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/keybind/KeymapUtil.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/keybind/KeymapUtil.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/logging/LogFormatter.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/logging/LogFormatter.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/logging/LoggingUtils.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/logging/LoggingUtils.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/logging/NbLogging.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/logging/NbLogging.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/ConnectionResult.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/ConnectionResult.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/Decorator.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/Decorator.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/ImageCategory.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/ImageCategory.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/ImageModel.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/ImageModel.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/LoginErrorType.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/LoginErrorType.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/MappingType.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/MappingType.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/RecentFolder.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/RecentFolder.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/SampleImage.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/SampleImage.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/SplitHalf.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/SplitHalf.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/model/SplitTypeInfo.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/model/SplitTypeInfo.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/nodes/NodeTracker.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/nodes/NodeTracker.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/nodes/RootNode.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/nodes/RootNode.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/BrandingConfig.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/BrandingConfig.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/FileCallable.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/FileCallable.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/HelpTextUtils.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/HelpTextUtils.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/ImageCache.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/ImageCache.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/MailHelper.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/MailHelper.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/PathTranslator.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/PathTranslator.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/PathUtil.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/PathUtil.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/Progress.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/Progress.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/Refreshable.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/Refreshable.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/RendererType2D.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/RendererType2D.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/SystemCall.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/SystemCall.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/SystemInfo.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/SystemInfo.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/util/Utils.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/util/Utils.java -------------------------------------------------------------------------------- /modules/Core/src/main/java/org/janelia/workstation/core/ws/ExternalClient.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/java/org/janelia/workstation/core/ws/ExternalClient.java -------------------------------------------------------------------------------- /modules/Core/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Core/src/main/resources/console.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/resources/console.properties -------------------------------------------------------------------------------- /modules/Core/src/main/resources/org/janelia/workstation/core/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/main/resources/org/janelia/workstation/core/Bundle.properties -------------------------------------------------------------------------------- /modules/Core/src/test/java/org/janelia/workstation/core/api/DomainModelTest.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/test/java/org/janelia/workstation/core/api/DomainModelTest.java -------------------------------------------------------------------------------- /modules/Core/src/test/java/org/janelia/workstation/core/api/JwtParserTest.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Core/src/test/java/org/janelia/workstation/core/api/JwtParserTest.java -------------------------------------------------------------------------------- /modules/DarculaLAF/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/pom.xml -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/DarculaLFCustoms.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/DarculaLFCustoms.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/DarkIconFilter.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/DarkIconFilter.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/GuaranteedValue.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/GuaranteedValue.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/Installer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/Installer.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/RelativeColor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/RelativeColor.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/ToolbarXP.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/ToolbarXP.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/UIBootstrapValue.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/UIBootstrapValue.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/ui/FixedMenuUI.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/java/com/revivius/nb/darcula/ui/FixedMenuUI.java -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/bulenkov/darcula/icons/splitGlueH.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/bulenkov/darcula/icons/splitGlueH.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/bulenkov/darcula/icons/splitGlueV.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/bulenkov/darcula/icons/splitGlueV.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/Bundle.properties -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/closed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/closed.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/column-asc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/column-asc.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/column-desc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/column-desc.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/computer.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/computer.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/detailsView.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/detailsView.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/file.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/file.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/floppyDrive.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/floppyDrive.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/folder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/folder.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/hardDrive.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/hardDrive.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/homeFolder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/homeFolder.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/layer.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/layer.xml -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/listView.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/listView.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/newFolder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/newFolder.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/open.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/open.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/upFolder.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/com/revivius/nb/darcula/upFolder.png -------------------------------------------------------------------------------- /modules/DarculaLAF/src/main/resources/org/openide/awt/resources/arrow_dark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DarculaLAF/src/main/resources/org/openide/awt/resources/arrow_dark.png -------------------------------------------------------------------------------- /modules/DataBrowser/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DataBrowser/pom.xml -------------------------------------------------------------------------------- /modules/DataBrowser/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DataBrowser/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/DataBrowser/src/main/resources/org/janelia/workstation/browser/layer.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/DataBrowser/src/main/resources/org/janelia/workstation/browser/layer.xml -------------------------------------------------------------------------------- /modules/GLViewerTools/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/pom.xml -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/BasicGL3Actor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/BasicGL3Actor.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/BasicShaderProgram.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/BasicShaderProgram.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/BufferClearActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/BufferClearActor.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/Framebuffer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/Framebuffer.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/GL3Actor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/GL3Actor.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/GL3Resource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/GL3Resource.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/LightingBlitActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/LightingBlitActor.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/MJ2Parser.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/MJ2Parser.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/MeshActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/MeshActor.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/MeshFloatVbo.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/MeshFloatVbo.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/MultipassRenderer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/MultipassRenderer.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/RenderPass.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/RenderPass.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/RenderTarget.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/RenderTarget.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/ShaderProgram.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/ShaderProgram.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/ShaderStep.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/ShaderStep.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/material/Material.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/material/Material.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/texture/Texture2d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/texture/Texture2d.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/java/org/janelia/gltools/texture/Texture3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/java/org/janelia/gltools/texture/Texture3d.java -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/resources/org/janelia/gltools/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/resources/org/janelia/gltools/Bundle.properties -------------------------------------------------------------------------------- /modules/GLViewerTools/src/main/resources/org/janelia/gltools/camera.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/GLViewerTools/src/main/resources/org/janelia/gltools/camera.gif -------------------------------------------------------------------------------- /modules/Geometry3d/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/pom.xml -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry/units/Quantity.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry/units/Quantity.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry/units/Unit.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry/units/Unit.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry/units/Value.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry/units/Value.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry/units/si/Micrometer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry/units/si/Micrometer.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry/util/PerformanceTimer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry/util/PerformanceTimer.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/AbstractCamera.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/AbstractCamera.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/BasicObject3D.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/BasicObject3D.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/BasicVector.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/BasicVector.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Box3.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Box3.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/CentroidHaver.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/CentroidHaver.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Child.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Child.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/CompositeObject3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/CompositeObject3d.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/ConstVector.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/ConstVector.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/ConstVector3.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/ConstVector3.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/CoordinateAxis.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/CoordinateAxis.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Copyable.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Copyable.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/CubeGeometry.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/CubeGeometry.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Edge.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Edge.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Face.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Face.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/LateralOffsetCamera.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/LateralOffsetCamera.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Matrix4.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Matrix4.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/MeshGeometry.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/MeshGeometry.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Object3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Object3d.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/ObservableInterface.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/ObservableInterface.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/OrthographicCamera.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/OrthographicCamera.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Parent.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Parent.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/PerspectiveCamera.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/PerspectiveCamera.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Quaternion.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Quaternion.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Rotation.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Rotation.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/ScreenQuadMesh.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/ScreenQuadMesh.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Sphere.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Sphere.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Triangle.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Triangle.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vantage.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vantage.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/VantageInterface.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/VantageInterface.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vector2.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vector2.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vector3.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vector3.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vector4.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vector4.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vertex.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Vertex.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/ViewSlab.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/ViewSlab.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/Viewport.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/Viewport.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/VolumeTextureMesh.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/VolumeTextureMesh.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/WavefrontObjLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/WavefrontObjLoader.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/java/org/janelia/geometry3d/camera/ConstVantage.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/java/org/janelia/geometry3d/camera/ConstVantage.java -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Geometry3d/src/main/resources/org/janelia/geometry3d/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/main/resources/org/janelia/geometry3d/Bundle.properties -------------------------------------------------------------------------------- /modules/Geometry3d/src/test/java/org/janelia/geometry3d/Vector3Test.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Geometry3d/src/test/java/org/janelia/geometry3d/Vector3Test.java -------------------------------------------------------------------------------- /modules/HortaTracer/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/pom.xml -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/net/jpountz/lz4/LZ4FrameInputStream.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/net/jpountz/lz4/LZ4FrameInputStream.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/net/jpountz/lz4/LZ4FrameOutputStream.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/net/jpountz/lz4/LZ4FrameOutputStream.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/BrainTileInfo.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/BrainTileInfo.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/BrainTileInfoBuilder.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/BrainTileInfoBuilder.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/CachedTileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/CachedTileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/ConstantRadiusEstimator.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/ConstantRadiusEstimator.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/FileBasedTileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/FileBasedTileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/HortaMenuContext.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/HortaMenuContext.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/ImmutableNeuriteAnchor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/ImmutableNeuriteAnchor.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/JadeBasedTileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/JadeBasedTileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/KtxBlockMenuBuilder.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/KtxBlockMenuBuilder.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/NeuronTraceLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/NeuronTraceLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/PickIdManager.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/PickIdManager.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/PlayReviewManager.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/PlayReviewManager.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/PlayState.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/PlayState.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/RadiusEstimator.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/RadiusEstimator.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/TileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/TileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/TracingInteractor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/TracingInteractor.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/ViewLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/ViewLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/VolumeProjection.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/VolumeProjection.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actions/ZSliceUpAction.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actions/ZSliceUpAction.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/BrainTileMesh.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/BrainTileMesh.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/ConesMaterial.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/ConesMaterial.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/OmeZarrMesh.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/OmeZarrMesh.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/ScaleBar.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/ScaleBar.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/SpheresActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/SpheresActor.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/SpheresMaterial.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/SpheresMaterial.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/actors/TetVolumeActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/actors/TetVolumeActor.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BasicTileCache.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BasicTileCache.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockChooser.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockChooser.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockTileData.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockTileData.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockTileKey.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockTileKey.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockTileSource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/BlockTileSource.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/KtxTileCache.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/KtxTileCache.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/OmeZarrOffsetKey.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/OmeZarrOffsetKey.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/blocks/OmeZarrTileCache.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/blocks/OmeZarrTileCache.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/camera/Interpolator.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/camera/Interpolator.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/controller/HortaManager.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/controller/HortaManager.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/ktx/KtxData.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/ktx/KtxData.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/ktx/KtxHeader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/ktx/KtxHeader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/BasicDataSource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/BasicDataSource.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/DataSource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/DataSource.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/FileDataSource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/FileDataSource.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/FileHandler.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/FileHandler.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/FileTypeLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/FileTypeLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/GZIPFileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/GZIPFileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/HortaKtxLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/HortaKtxLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/HortaVolumeCache.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/HortaVolumeCache.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/LZ4FileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/LZ4FileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/ObjMeshLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/ObjMeshLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/OmeZarrLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/OmeZarrLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/TarFileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/TarFileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/loader/TgzFileLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/loader/TgzFileLoader.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/modelapi/SpecimenImage.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/modelapi/SpecimenImage.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/BasicKeyFrame.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/BasicKeyFrame.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/HortaMovieSource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/HortaMovieSource.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/KeyFrame.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/KeyFrame.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/MoviePlayState.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/MoviePlayState.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/MovieRenderer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/MovieRenderer.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/MovieSource.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/MovieSource.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/SaveFramesPanel.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/SaveFramesPanel.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/Timeline.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/Timeline.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/movie/ViewerState.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/movie/ViewerState.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/neuronvbo/NeuronVbo.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/neuronvbo/NeuronVbo.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/neuronvbo/NeuronVboPool.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/neuronvbo/NeuronVboPool.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/neuronvbo/VertexData.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/neuronvbo/VertexData.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/nodes/ObjectMeshPanel.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/nodes/ObjectMeshPanel.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/options/package-info.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/options/package-info.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/render/NeuronMPRenderer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/render/NeuronMPRenderer.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/render/OpaqueRenderPass.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/render/OpaqueRenderPass.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/render/RemapColorActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/render/RemapColorActor.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/render/VolumeRenderPass.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/render/VolumeRenderPass.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/util/HttpClientHelper.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/util/HttpClientHelper.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/volume/BrickActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/volume/BrickActor.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/volume/BrickInfo.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/volume/BrickInfo.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/volume/BrickInfoSet.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/volume/BrickInfoSet.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/java/org/janelia/horta/volume/VoxelIndex.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/java/org/janelia/horta/volume/VoxelIndex.java -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/1404592974_adjust.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/1404592974_adjust.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/Bundle.properties -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/ColorSliderIcon16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/ColorSliderIcon16.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/ColorSliderIcon64.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/ColorSliderIcon64.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/HotColorMap.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/HotColorMap.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/VertexLink2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/VertexLink2.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/VertexTip2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/VertexTip2.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/brain-icon2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/brain-icon2.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/frame_circle.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/frame_circle.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/mesh.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/mesh.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/neuron1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/neuron1.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/images/neuron_group.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/images/neuron_group.png -------------------------------------------------------------------------------- /modules/HortaTracer/src/main/resources/org/janelia/horta/movie/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/HortaTracer/src/main/resources/org/janelia/horta/movie/Bundle.properties -------------------------------------------------------------------------------- /modules/IntegrationAPIs/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/IntegrationAPIs/pom.xml -------------------------------------------------------------------------------- /modules/IntegrationAPIs/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/IntegrationAPIs/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Jogl213Lib/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Jogl213Lib/pom.xml -------------------------------------------------------------------------------- /modules/Jogl213Lib/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Jogl213Lib/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Jogl213Lib/src/main/resources/org/janelia/jogl213lib/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Jogl213Lib/src/main/resources/org/janelia/jogl213lib/Bundle.properties -------------------------------------------------------------------------------- /modules/Jogl224Lib/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Jogl224Lib/pom.xml -------------------------------------------------------------------------------- /modules/Jogl224Lib/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Jogl224Lib/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Jogl224Lib/src/main/resources/org/janelia/jogl224lib/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Jogl224Lib/src/main/resources/org/janelia/jogl224lib/Bundle.properties -------------------------------------------------------------------------------- /modules/LMDataBrowser/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/LMDataBrowser/pom.xml -------------------------------------------------------------------------------- /modules/LMDataBrowser/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/LMDataBrowser/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/LMDataBrowser/src/main/resources/org/janelia/workstation/lm/layer.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/LMDataBrowser/src/main/resources/org/janelia/workstation/lm/layer.xml -------------------------------------------------------------------------------- /modules/LargeVolumeViewer/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/LargeVolumeViewer/pom.xml -------------------------------------------------------------------------------- /modules/LargeVolumeViewer/src/compression_code.tar: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/LargeVolumeViewer/src/compression_code.tar -------------------------------------------------------------------------------- /modules/LargeVolumeViewer/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/LargeVolumeViewer/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/N5Viewer/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/N5Viewer/pom.xml -------------------------------------------------------------------------------- /modules/N5Viewer/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/N5Viewer/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/N5Viewer/src/main/resources/n5viewer/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/N5Viewer/src/main/resources/n5viewer/Bundle.properties -------------------------------------------------------------------------------- /modules/N5Viewer/src/main/resources/n5viewer/images/group16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/N5Viewer/src/main/resources/n5viewer/images/group16.png -------------------------------------------------------------------------------- /modules/SceneWindow/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/pom.xml -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/BasicScene.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/BasicScene.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/GLJComponent.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/GLJComponent.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/Light.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/Light.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/MyJXTaskPane.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/MyJXTaskPane.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/Scene.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/Scene.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/SceneInteractor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/SceneInteractor.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/SceneRenderer.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/SceneRenderer.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/SceneWindow.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/SceneWindow.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/fps/FPSGraph.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/fps/FPSGraph.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/java/org/janelia/scenewindow/fps/FrameTracker.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/java/org/janelia/scenewindow/fps/FrameTracker.java -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Bundle.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Bundle.properties -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Slab0.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Slab0.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Slab1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Slab1.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Slab2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/Slab2.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/camera.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/camera.gif -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/crosshair3.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/crosshair3.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/grab_closed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/grab_closed.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/grab_opened.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/grab_opened.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/rotate_icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/rotate_icon.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/scene.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/scene.png -------------------------------------------------------------------------------- /modules/SceneWindow/src/main/resources/org/janelia/scenewindow/stopwatch1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SceneWindow/src/main/resources/org/janelia/scenewindow/stopwatch1.png -------------------------------------------------------------------------------- /modules/SiteHortaCloud/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SiteHortaCloud/pom.xml -------------------------------------------------------------------------------- /modules/SiteHortaCloud/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SiteHortaCloud/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/SiteJRC/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SiteJRC/pom.xml -------------------------------------------------------------------------------- /modules/SiteJRC/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/SiteJRC/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Viewer3D/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/pom.xml -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/FFMpegLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/FFMpegLoader.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/Frame.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/Frame.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/H5JLoader.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/H5JLoader.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/ImageStack.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/ffmpeg/ImageStack.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/BoundingBox3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/BoundingBox3d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/CoordinateAxis.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/CoordinateAxis.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Quaternion.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Quaternion.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Rotation3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Rotation3d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/SizedVector.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/SizedVector.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Transform3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Transform3d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/UnitVec3.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/UnitVec3.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Vec3.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/geom/Vec3.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/FullScreenMode.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/FullScreenMode.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/camera/Camera3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/camera/Camera3d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GL3Actor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GL3Actor.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GLActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GLActor.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GLError.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GLError.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GLMatrix.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/GLMatrix.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/MeshActor.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/opengl/MeshActor.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/gui/viewer3d/Mip3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/gui/viewer3d/Mip3d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/mesh_loader/Triangle.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/mesh_loader/Triangle.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/octree/ZoomLevel.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/octree/ZoomLevel.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Signal.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Signal.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Signal1.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Signal1.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Slot.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Slot.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Slot1.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/signal/Slot1.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/swc/SWCData.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/swc/SWCData.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/swc/SWCDataConverter.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/swc/SWCDataConverter.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/swc/SWCNode.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/swc/SWCNode.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/BaseDimension.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/BaseDimension.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/Displacement2d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/Displacement2d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/Displacement3d.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/Displacement3d.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/Length.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/Length.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/PhysicalUnit.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/PhysicalUnit.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/QuantityImpl.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/QuantityImpl.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/SI.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/SI.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/java/org/janelia/workstation/units/SIUnit.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/java/org/janelia/workstation/units/SIUnit.java -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/resources/font/monospaced_plain_15_axistickbkbgrnd.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/resources/font/monospaced_plain_15_axistickbkbgrnd.png -------------------------------------------------------------------------------- /modules/Viewer3D/src/main/resources/font/monospaced_plain_15_axistickwtbgrnd.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/Viewer3D/src/main/resources/font/monospaced_plain_15_axistickwtbgrnd.png -------------------------------------------------------------------------------- /modules/ViewerController/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/pom.xml -------------------------------------------------------------------------------- /modules/ViewerController/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/clear_all.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/clear_all.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/closed_eye.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/closed_eye.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/control_fastforward_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/control_fastforward_blue.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/control_pause_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/control_pause_blue.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/control_rewind_blue.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/control_rewind_blue.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/delete.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/delete.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/eye.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/eye.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/jet_icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/jet_icon.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/lock.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/lock.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/lock_unlock.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/lock_unlock.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/next_item.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/next_item.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/next_node.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/next_node.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/open_action.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/open_action.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/play.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/play.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/plus-button.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/plus-button.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/prev_node.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/prev_node.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/previous_item.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/previous_item.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/review_cleared.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/review_cleared.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/review_completed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/review_completed.png -------------------------------------------------------------------------------- /modules/ViewerController/src/main/resources/images/select_all.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerController/src/main/resources/images/select_all.png -------------------------------------------------------------------------------- /modules/ViewerInfoPanel/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerInfoPanel/pom.xml -------------------------------------------------------------------------------- /modules/ViewerInfoPanel/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/ViewerInfoPanel/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /modules/application/license.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/license.txt -------------------------------------------------------------------------------- /modules/application/nbactions.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/nbactions.xml -------------------------------------------------------------------------------- /modules/application/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/pom.xml -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/ConfigurationLogic.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/ConfigurationLogic.java -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/bin/janeliaws: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/bin/janeliaws -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/bin/janeliaws.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/bin/janeliaws.exe -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/bin/janeliaws64.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/bin/janeliaws64.exe -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/build.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/build.xml -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/janeliaws.icns: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/janeliaws.icns -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/janeliaws128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/janeliaws128.png -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/janeliaws48.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/janeliaws48.png -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/launcher.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/launcher.sh -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/nbexec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/nbexec -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/template.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/template.xml -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/unix.launcher.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/unix.launcher.properties -------------------------------------------------------------------------------- /modules/application/src/main/app-resources/windows.launcher.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/app-resources/windows.launcher.properties -------------------------------------------------------------------------------- /modules/application/src/main/resources/Info.plist: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/resources/Info.plist -------------------------------------------------------------------------------- /modules/application/src/main/resources/janeliaws.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/main/resources/janeliaws.conf -------------------------------------------------------------------------------- /modules/application/src/test/java/org/janelia/workstation/ApplicationTest.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application/src/test/java/org/janelia/workstation/ApplicationTest.java -------------------------------------------------------------------------------- /modules/application_horta/license.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/license.txt -------------------------------------------------------------------------------- /modules/application_horta/nbactions.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/nbactions.xml -------------------------------------------------------------------------------- /modules/application_horta/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/pom.xml -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/ConfigurationLogic.java: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/ConfigurationLogic.java -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/bin/horta: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/bin/horta -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/bin/horta.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/bin/horta.exe -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/bin/horta64.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/bin/horta64.exe -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/build.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/build.xml -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/horta.icns: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/horta.icns -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/horta128.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/horta128.png -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/horta48.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/horta48.png -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/launcher.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/launcher.sh -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/nbexec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/nbexec -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/template.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/template.xml -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/unix.launcher.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/unix.launcher.properties -------------------------------------------------------------------------------- /modules/application_horta/src/main/app-resources/windows.launcher.properties: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/app-resources/windows.launcher.properties -------------------------------------------------------------------------------- /modules/application_horta/src/main/resources/Info.plist: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/resources/Info.plist -------------------------------------------------------------------------------- /modules/application_horta/src/main/resources/horta.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/application_horta/src/main/resources/horta.conf -------------------------------------------------------------------------------- /modules/branding/pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/branding/pom.xml -------------------------------------------------------------------------------- /modules/branding/src/main/nbm-branding/modules/org-netbeans-core-windows.jar/org/netbeans/core/windows/Bundle.properties: -------------------------------------------------------------------------------- 1 | Splitter.Respect.MinimumSize.Enabled=false 2 | -------------------------------------------------------------------------------- /modules/branding/src/main/nbm/manifest.mf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/modules/branding/src/main/nbm/manifest.mf -------------------------------------------------------------------------------- /pom.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/pom.xml -------------------------------------------------------------------------------- /release.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/workstation/HEAD/release.sh --------------------------------------------------------------------------------