├── .gitattributes ├── .github └── workflows │ └── python-ci.yml ├── .gitignore ├── .pylintrc ├── LICENSE ├── README.md ├── bin └── generate_aux_images.py ├── docker ├── Dockerfile ├── docker-compose.yml ├── env.template └── nginx.conf ├── docs ├── Configuration.md ├── DataImport.md ├── Deployment.md ├── Development.md └── Overview.md ├── examples ├── flyefish.csv ├── flyefish.yaml ├── openorganelle.tsv ├── openorganelle.yaml ├── t3.csv └── t3.yaml ├── notebooks ├── Database.ipynb ├── Development.ipynb ├── MIPs.ipynb └── Thumbnails.ipynb ├── pixi.lock ├── pixi.toml ├── settings.yaml.template ├── static ├── HHMI_Janelia_Logo_Black_Background.png ├── aics_website-3d-cell-viewer.png ├── check.png ├── copy-link-64.png ├── functions.js ├── neuroglancer.png ├── styles.css ├── view-details-64.png ├── view-details.svg ├── vizarr_logo.png ├── zarr.jpg └── zarrcade.png ├── templates ├── collection.html ├── details.html ├── footer.html ├── form.html ├── head.html ├── index.html ├── pagination.html └── topbar.html ├── tests └── test_database.py └── zarrcade ├── __init__.py ├── __main__.py ├── agents ├── __init__.py ├── agent.py └── omezarr.py ├── cli.py ├── collection.py ├── database.py ├── filestore.py ├── load.py ├── model.py ├── serve.py ├── settings.py ├── thumbnails.py └── viewers.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/zarrcade/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/workflows/python-ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JaneliaSciComp/zarrcade/HEAD/.github/workflows/python-ci.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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