├── README.md ├── axialnet.py ├── baselines.py ├── biastuning_env.yml ├── clip ├── __init__.py ├── bpe_simple_vocab_16e6.txt.gz ├── clip.py ├── model.py └── simple_tokenizer.py ├── config_chestxdet.yml ├── config_cholec8k.yml ├── config_endovis.yml ├── config_endovis18.yml ├── config_idrid.yml ├── config_kvasirseg.yml ├── config_lits.yml ├── config_tmp.yml ├── config_ultrasound.yml ├── data_transforms ├── ChestXDet_transform.py ├── cholec_8k_transform.py ├── endovis_18_transform.py ├── endovis_transform.py ├── kvasirSeg_transform.py └── ultrasound_transform.py ├── data_utils.py ├── driver_scratchpad.py ├── eval ├── chestXDet │ ├── config_chestxdet.yml │ ├── generate_all_predictions.sh │ ├── generate_predictions.py │ ├── generate_predictions_baselines.py │ ├── model_baseline.yml │ └── model_biastuning.yml ├── cholec8k │ ├── config_cholec8k_test.yml │ ├── config_model_test.yml │ ├── generate_predictions_baselines.py │ ├── generate_predictions_cholec.py │ └── model_baseline.yml ├── endovis │ ├── config_endovis_test.yml │ ├── config_model_test.yml │ ├── generate_all_baseline_results.sh │ ├── generate_all_predictions.sh │ ├── generate_predictions.py │ ├── generate_predictions_baselines.py │ ├── model_baseline.yml │ ├── random_patch_preds.py │ └── testing_results_dice.py ├── endovis18 │ ├── calculate_ious.py │ ├── config_endovis18_test.yml │ ├── generate_all_baseline_results.sh │ ├── generate_all_results.sh │ ├── generate_predictions.py │ ├── generate_predictions_baselines.py │ ├── model_baseline.yml │ └── model_biastuning.yml ├── road │ ├── config_data.yml │ ├── generate_predictions.py │ └── model_config.yml └── ultrasound │ ├── config_ultrasound.yml │ ├── generate_all_predictions.sh │ ├── generate_predictions.py │ ├── generate_predictions_baselines.py │ ├── model_baseline.yml │ └── model_biastuning.yml ├── model.py ├── model_baseline.yml ├── model_biastuning.yml ├── model_components └── fdn.py ├── model_fdn.yml ├── model_prompttuning.yml ├── prompt_adapted_segment_anything ├── __init__.py ├── automatic_mask_generator.py ├── build_sam.py ├── modeling │ ├── __init__.py │ ├── common.py │ ├── image_encoder.py │ ├── mask_decoder.py │ ├── prompt_encoder.py │ ├── sam.py │ └── transformer.py ├── predictor.py └── utils │ ├── __init__.py │ ├── amg.py │ ├── onnx.py │ └── transforms.py ├── scratchpad.ipynb ├── test.py ├── train.py ├── train_baselines.py ├── utils.py ├── vit_seg_configs.py ├── vit_seg_modeling.py └── vit_seg_modeling_resnet_skip.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JayParanjape/biastuning/HEAD/README.md -------------------------------------------------------------------------------- /axialnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JayParanjape/biastuning/HEAD/axialnet.py 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