├── CNV.Discovery.sh ├── CNVcaller-中文使用手册.pdf ├── Genotype.py ├── Individual.Process.sh ├── LICENSE ├── README.md └── bin ├── 0.1.Kmer_Generate.py ├── 0.2.Kmer_Link.py ├── 1.1.CNVprocess.pl ├── 1.2.CNVcorrect.pl ├── 1.3.CNVnormalize.pl ├── 2.1.CNVDiscoveryMerge.pl ├── 2.2.CNVRRedundancy.pl └── CNVReferenceDB.pl /CNV.Discovery.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/CNV.Discovery.sh -------------------------------------------------------------------------------- /CNVcaller-中文使用手册.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/CNVcaller-中文使用手册.pdf -------------------------------------------------------------------------------- /Genotype.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/Genotype.py -------------------------------------------------------------------------------- /Individual.Process.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/Individual.Process.sh -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/README.md -------------------------------------------------------------------------------- /bin/0.1.Kmer_Generate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/0.1.Kmer_Generate.py -------------------------------------------------------------------------------- /bin/0.2.Kmer_Link.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/0.2.Kmer_Link.py -------------------------------------------------------------------------------- /bin/1.1.CNVprocess.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/1.1.CNVprocess.pl -------------------------------------------------------------------------------- /bin/1.2.CNVcorrect.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/1.2.CNVcorrect.pl -------------------------------------------------------------------------------- /bin/1.3.CNVnormalize.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/1.3.CNVnormalize.pl -------------------------------------------------------------------------------- /bin/2.1.CNVDiscoveryMerge.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/2.1.CNVDiscoveryMerge.pl -------------------------------------------------------------------------------- /bin/2.2.CNVRRedundancy.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/2.2.CNVRRedundancy.pl -------------------------------------------------------------------------------- /bin/CNVReferenceDB.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JiangYuLab/CNVcaller/HEAD/bin/CNVReferenceDB.pl --------------------------------------------------------------------------------