├── .DS_Store ├── README.md ├── SADIR-shape-aware-diffusion-models-for-3D-image-reconstruction ├── .DS_Store ├── README.md ├── SADIR_forward.py ├── atlas_builder │ ├── DataSet.py │ ├── Geo-SIC.py │ ├── __pycache__ │ │ ├── DataSet.cpython-38.pyc │ │ ├── layers.cpython-38.pyc │ │ ├── losses.cpython-38.pyc │ │ ├── modelio.cpython-38.pyc │ │ └── networks.cpython-38.pyc │ ├── atlas_trainer.py │ ├── classifiers.py │ ├── layers.py │ ├── losses.py │ ├── modelio.py │ ├── networks.py │ └── parameters.yml ├── guided_diffusion │ ├── __init__.py │ ├── fp16_util.py │ ├── gaussian_diffusion.py │ ├── logger.py │ ├── losses.py │ ├── nn.py │ ├── resample.py │ ├── respace.py │ ├── script_util.py │ ├── train_util.py │ └── unet.py ├── network_architecture.png ├── testing.ipynb ├── training.ipynb ├── utils │ ├── NiftiDataset.py │ ├── __pycache__ │ │ ├── NiftiDataset.cpython-35.pyc │ │ ├── NiftiDataset.cpython-36.pyc │ │ ├── generator.cpython-35.pyc │ │ ├── generator.cpython-36.pyc │ │ ├── metrics.cpython-35.pyc │ │ ├── metrics.cpython-36.pyc │ │ └── metrics.cpython-38.pyc │ ├── generator.py │ └── metrics.py └── voxelmorph │ ├── .DS_Store │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-38.pyc │ ├── __init__.cpython-39.pyc │ ├── generators.cpython-38.pyc │ └── generators.cpython-39.pyc │ ├── generators.py │ ├── py │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-38.pyc │ │ ├── __init__.cpython-39.pyc │ │ ├── utils.cpython-38.pyc │ │ └── utils.cpython-39.pyc │ └── utils.py │ └── torch │ ├── BuildingBlocks.py │ ├── __init__.py │ ├── __pycache__ │ ├── BuildingBlocks.cpython-38.pyc │ ├── __init__.cpython-38.pyc │ ├── __init__.cpython-39.pyc │ ├── attention_unet.cpython-38.pyc │ ├── d3_attention_unet.cpython-38.pyc │ ├── fp16_util.cpython-38.pyc │ ├── fp16_util.cpython-39.pyc │ ├── layers.cpython-38.pyc │ ├── layers.cpython-39.pyc │ ├── logger.cpython-38.pyc │ ├── logger.cpython-39.pyc │ ├── losses.cpython-38.pyc │ ├── losses.cpython-39.pyc │ ├── modelio.cpython-38.pyc │ ├── modelio.cpython-39.pyc │ ├── networks.cpython-38.pyc │ ├── networks.cpython-39.pyc │ ├── nn.cpython-38.pyc │ ├── nn.cpython-39.pyc │ ├── sca_3d.cpython-38.pyc │ ├── unet.cpython-38.pyc │ ├── unet.cpython-39.pyc │ ├── utils.cpython-38.pyc │ └── utils.cpython-39.pyc │ ├── attention_unet.py │ ├── fp16_util.py │ ├── guided_diffusion │ ├── fp16_util.py │ ├── logger.py │ ├── nn.py │ └── unet.py │ ├── layers.py │ ├── logger.py │ ├── losses.py │ ├── modelio.py │ ├── networks.py │ ├── nn.py │ ├── sca_3d.py │ ├── unet.py │ └── utils.py ├── anatomy-completor ├── readme.md └── sources │ ├── completor_model.py │ └── readme.md ├── assets ├── completor_dataset.png ├── completor_results.png ├── facial_reconstruction_results.png ├── forensic_facial_reconstruction.png ├── github.png ├── paper.png ├── readme.md ├── shape_gallery.png ├── single_class_dataset.png ├── single_class_results.png └── skull_reconstruction.png ├── pcdiff-implant ├── LICENSE ├── README.md ├── media │ ├── example_skullbreak.png │ ├── example_skullfix.png │ └── overview_pipeline.png ├── pcdiff │ ├── README.md │ ├── datasets │ │ ├── __init__.py │ │ ├── skullbreak_data.py │ │ └── skullfix_data.py │ ├── model │ │ ├── __init__.py │ │ └── pvcnn_completion.py │ ├── modules │ │ ├── __init__.py │ │ ├── ball_query.py │ │ ├── frustum.py │ │ ├── functional │ │ │ ├── __init__.py │ │ │ ├── backend.py │ │ │ ├── ball_query.py │ │ │ ├── devoxelization.py │ │ │ ├── grouping.py │ │ │ ├── interpolatation.py │ │ │ ├── loss.py │ │ │ ├── sampling.py │ │ │ ├── src │ │ │ │ ├── ball_query │ │ │ │ │ ├── ball_query.cpp │ │ │ │ │ ├── ball_query.cu │ │ │ │ │ ├── ball_query.cuh │ │ │ │ │ └── ball_query.hpp │ │ │ │ ├── bindings.cpp │ │ │ │ ├── cuda_utils.cuh │ │ │ │ ├── grouping │ │ │ │ │ ├── grouping.cpp │ │ │ │ │ ├── grouping.cu │ │ │ │ │ ├── grouping.cuh │ │ │ │ │ └── grouping.hpp │ │ │ │ ├── interpolate │ │ │ │ │ ├── neighbor_interpolate.cpp │ │ │ │ │ ├── neighbor_interpolate.cu │ │ │ │ │ ├── neighbor_interpolate.cuh │ │ │ │ │ ├── neighbor_interpolate.hpp │ │ │ │ │ ├── trilinear_devox.cpp │ │ │ │ │ ├── trilinear_devox.cu │ │ │ │ │ ├── trilinear_devox.cuh │ │ │ │ │ └── trilinear_devox.hpp │ │ │ │ ├── sampling │ │ │ │ │ ├── sampling.cpp │ │ │ │ │ ├── sampling.cu │ │ │ │ │ ├── sampling.cuh │ │ │ │ │ └── sampling.hpp │ │ │ │ ├── utils.hpp │ │ │ │ └── voxelization │ │ │ │ │ ├── vox.cpp │ │ │ │ │ ├── vox.cu │ │ │ │ │ ├── vox.cuh │ │ │ │ │ └── vox.hpp │ │ │ └── voxelization.py │ │ ├── loss.py │ │ ├── pointnet.py │ │ ├── pvconv.py │ │ ├── se.py │ │ ├── shared_mlp.py │ │ └── voxelization.py │ ├── pcd_env.yaml │ ├── test_completion.py │ ├── train_completion.py │ └── utils │ │ ├── __init__.py │ │ ├── convert_cam_params.py │ │ ├── file_utils.py │ │ ├── metrics.py │ │ ├── preproc_skullbreak.py │ │ ├── preproc_skullfix.py │ │ ├── split_skullbreak.py │ │ ├── split_skullfix.py │ │ └── visualize.py └── voxelization │ ├── README.md │ ├── configs │ ├── default.yaml │ ├── gen_skullbreak.yaml │ ├── gen_skullfix.yaml │ ├── train_skullbreak.yaml │ └── train_skullfix.yaml │ ├── eval_metrics.py │ ├── generate.py │ ├── src │ ├── __init__.py │ ├── config.py │ ├── data │ │ ├── __init__.py │ │ ├── core.py │ │ ├── fields.py │ │ └── transforms.py │ ├── data_loader.py │ ├── dpsr.py │ ├── eval.py │ ├── generation.py │ ├── model.py │ ├── model_rgb.py │ ├── network │ │ ├── __init__.py │ │ ├── decoder.py │ │ ├── encoder.py │ │ ├── net_rgb.py │ │ ├── unet.py │ │ ├── unet3d.py │ │ └── utils.py │ ├── optimization.py │ ├── training.py │ ├── utils.py │ └── visualize.py │ ├── train.py │ ├── utils │ ├── augment_skullbreak.py │ ├── augment_skullfix.py │ ├── preproc_skullbreak.py │ ├── preproc_skullfix.py │ ├── split_skullbreak.py │ └── split_skullfix.py │ └── vox_env.yaml ├── pip_install_MedShapeNetCore ├── LICENSE ├── MedShapeNetCore │ ├── MedShapeNetCore.py │ ├── __init__.py │ ├── __main__.py │ └── setup.py ├── examples │ ├── MONAI_3D_Shape_Classification.ipynb │ ├── MedShapeNetShowCase.ipynb │ 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