├── .gitignore ├── .readthedocs.yaml ├── LICENSE ├── README.md ├── SEDR ├── SEDR_model.py ├── SEDR_module.py ├── __init__.py ├── clustering_func.py ├── graph_func.py └── utils_func.py ├── docs ├── Installation.rst ├── Makefile ├── Tutorial1_Clustering.ipynb ├── Tutorial2_Imputation.ipynb ├── Tutorial3_Batch_integration.ipynb ├── Tutorial4_Stereo-seq.ipynb ├── batch_integration.png ├── conf.py ├── index.rst ├── make.bat └── requirements.txt ├── environment.yaml ├── figure └── Overview.png ├── requirements.txt └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JinmiaoChenLab/SEDR/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JinmiaoChenLab/SEDR/HEAD/.readthedocs.yaml 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