├── .github └── workflows │ └── ci.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .vscode └── settings.json ├── HISTORY.rst ├── README.rst ├── data └── simulation.h5ad ├── docs ├── api │ └── index.md ├── gen_ref_pages.py ├── index.md ├── installation.md └── notebooks │ └── stamp │ ├── Simulation.ipynb │ ├── example1.ipynb │ ├── example2.ipynb │ ├── example3.ipynb │ ├── example4.ipynb │ ├── example5.ipynb │ ├── example6.ipynb │ └── example7.ipynb ├── mkdocs.yml ├── pdm.lock ├── pyproject.toml └── sctm ├── __init__.py ├── analysis.py ├── data.py ├── dist.py ├── layers.py ├── metrics.py ├── model.py ├── pl.py ├── pp.py ├── rbo.py ├── seed.py ├── stamp.py └── utils.py /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/JinmiaoChenLab/scTM/HEAD/.github/workflows/ci.yml -------------------------------------------------------------------------------- /.gitignore: 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