├── .github ├── pull_request_template.md └── workflows │ ├── internal-check-links-in-documentation.yml │ ├── internal-check-python-venv-support.yml │ ├── internal-check-renovate-config.yml │ ├── internal-cypher-reference-documentation.yml │ ├── internal-environment-variables-reference-documentation.yml │ ├── internal-java-code-analysis.yml │ ├── internal-run-tests.yml │ ├── internal-scripts-reference-documentation.yml │ ├── internal-typescript-code-analysis.yml │ └── public-analyze-code-graph.yml ├── .nvmrc ├── CHANGELOG.md ├── COMMANDS.md ├── GETTING_STARTED.md ├── INTEGRATION.md ├── LICENSE ├── README.md ├── conda-environment.yml ├── cypher ├── Artifact_Dependencies │ ├── Artifacts_with_dependencies_to_other_artifacts.cypher │ ├── Artifacts_with_duplicate_packages.cypher │ ├── Incoming_Java_Artifact_Dependencies.cypher │ ├── Most_used_internal_dependencies_acreoss_artifacts.cypher │ ├── Outgoing_Java_Artifact_Dependencies.cypher │ ├── Set_maven_artifact_version.cypher │ ├── Set_number_of_Java_packages_and_types_on_artifacts.cypher │ ├── Usage_and_spread_of_internal_artifact_dependencies.cypher │ └── Usage_and_spread_of_internal_artifact_dependents.cypher ├── CYPHER.md ├── Centrality │ ├── Centrality_10a_Bridges_Estimate.cypher │ ├── Centrality_10d_Bridges_Stream.cypher │ ├── Centrality_10e_Bridges_Write.cypher │ ├── Centrality_1a_List_TopPercentile.cypher │ ├── Centrality_1b_List_TopPercent.cypher │ ├── Centrality_1c_Label_Delete.cypher │ ├── Centrality_1d_Label_Add.cypher │ ├── Centrality_2a_Page_Rank_Estimate.cypher │ ├── Centrality_2b_Page_Rank_Statistics.cypher │ ├── Centrality_3c_Page_Rank_Mutate.cypher │ ├── Centrality_3d_Page_Rank_Stream.cypher │ ├── Centrality_3e_Page_Rank_Write.cypher │ ├── Centrality_4a_Article_Rank_Estimate.cypher │ ├── Centrality_4b_Article_Rank_Statistics.cypher │ ├── Centrality_4c_Article_Rank_Mutate.cypher │ ├── Centrality_4d_Article_Rank_Stream.cypher │ ├── Centrality_4e_Article_Rank_Write.cypher │ ├── Centrality_5a_Betweeness_Estimate.cypher │ ├── Centrality_5b_Betweeness_Statistics.cypher │ ├── Centrality_5c_Betweeness_Mutate.cypher │ ├── Centrality_5d_Betweeness_Stream.cypher │ ├── Centrality_5e_Betweeness_Write.cypher │ ├── Centrality_6a_Cost_effective_Lazy_Forward_CELF_Estimate.cypher │ ├── Centrality_6b_Cost_effective_Lazy_Forward_CELF_Statistics.cypher │ ├── Centrality_6c_Cost_effective_Lazy_Forward_CELF_Mutate.cypher │ ├── Centrality_6d_Cost_effective_Lazy_Forward_CELF_Stream.cypher │ ├── Centrality_6e_Cost_effective_Lazy_Forward_CELF_Write.cypher │ ├── Centrality_7b_Harmonic_Closeness_Statistics.cypher │ ├── Centrality_7c_Harmonic_Closeness_Mutate.cypher │ ├── Centrality_7d_Harmonic_Closeness_Stream.cypher │ ├── Centrality_7e_Harmonic_Closeness_Write.cypher │ ├── Centrality_8b_Closeness_Statistics.cypher │ ├── Centrality_8c_Closeness_Mutate.cypher │ ├── Centrality_8d_Closeness_Stream.cypher │ ├── Centrality_8e_Closeness_Write.cypher │ ├── Centrality_90_Summary.cypher │ ├── Centrality_9a_Hyperlink_Induced_Topic_Search_HITS_Estimate.cypher │ ├── Centrality_9b_Hyperlink_Induced_Topic_Search_HITS_Statistics.cypher │ ├── Centrality_9c_Hyperlink_Induced_Topic_Search_HITS_Mutate.cypher │ ├── Centrality_9d_Hyperlink_Induced_Topic_Search_HITS_Stream.cypher │ ├── Centrality_9d_Hyperlink_Induced_Topic_Search_HITS_Stream_Mutated.cypher │ ├── Centrality_9e_Hyperlink_Induced_Topic_Search_HITS_Write.cypher │ └── Set_Parameters.cypher ├── Community_Detection │ ├── Community_Detection_10a_LocalClusteringCoefficient_Estimate.cypher │ ├── Community_Detection_10b_LocalClusteringCoefficient_Statistics.cypher │ ├── Community_Detection_10c_LocalClusteringCoefficient_Mutate.cypher │ ├── Community_Detection_10d_LocalClusteringCoefficient_Stream.cypher │ ├── Community_Detection_10d_LocalClusteringCoefficient_Stream_Aggregated.cypher │ ├── Community_Detection_10e_LocalClusteringCoefficient_Write.cypher │ ├── Community_Detection_11a_HDBSCAN_Estimate.cypher │ ├── Community_Detection_11b_HDBSCAN_Statistics.cypher │ ├── Community_Detection_11c_HDBSCAN_Mutate.cypher │ ├── Community_Detection_11d_HDBSCAN_Stream.cypher │ ├── Community_Detection_11e_HDBSCAN_Write.cypher │ ├── Community_Detection_1a_Louvain_Estimate.cypher │ ├── Community_Detection_1b_Louvain_Statistics.cypher │ ├── Community_Detection_1c_Louvain_Mutate.cypher │ ├── Community_Detection_1d_Louvain_Stream.cypher │ ├── Community_Detection_1d_Stream_Intermediate_Mutated.cypher │ ├── Community_Detection_1e_Louvain_Write_intermediateLouvainCommunityId.cypher │ ├── Community_Detection_1e_Louvain_Write_louvainCommunityId.cypher │ ├── Community_Detection_2a_Leiden_Estimate.cypher │ ├── Community_Detection_2b_Leiden_Statistics.cypher │ ├── Community_Detection_2b_Leiden_Tuneable_Statistics.cypher │ ├── Community_Detection_2c_Leiden_Mutate.cypher │ ├── Community_Detection_2d_Leiden_Stream.cypher │ ├── Community_Detection_2d_Leiden_Tuneable_Write.cypher │ ├── Community_Detection_2d_Leiden_Write_Node_Property.cypher │ ├── Community_Detection_3a_WeaklyConnectedComponents_Estimate.cypher │ ├── Community_Detection_3b_WeaklyConnectedComponents_Statistics.cypher │ ├── Community_Detection_3c_WeaklyConnectedComponents_Mutate.cypher │ ├── Community_Detection_3d_WeaklyConnectedComponents_Stream.cypher │ ├── Community_Detection_3e_WeaklyConnectedComponents_Write.cypher │ ├── Community_Detection_4a_Label_Propagation_Estimate.cypher │ ├── Community_Detection_4b_Label_Propagation_Statistics.cypher │ ├── Community_Detection_4c_Label_Propagation_Mutate.cypher │ ├── Community_Detection_4d_Label_Propagation_Stream.cypher │ ├── Community_Detection_4e_Label_Propagation_Write.cypher │ ├── Community_Detection_5a_K_Core_Decomposition_Estimate.cypher │ ├── Community_Detection_5b_K_Core_Decomposition_Statistics.cypher │ ├── Community_Detection_5c_K_Core_Decomposition_Mutate.cypher │ ├── Community_Detection_5d_K_Core_Decomposition_Stream.cypher │ ├── Community_Detection_5e_K_Core_Decomposition_Write.cypher │ ├── Community_Detection_6a_Approximate_Maximum_k_cut_Estimate.cypher │ ├── Community_Detection_6c_Approximate_Maximum_k_cut_Mutate.cypher │ ├── Community_Detection_6d_Approximate_Maximum_k_cut_Stream.cypher │ ├── Community_Detection_7d_Modularity.cypher │ ├── Community_Detection_7d_Modularity_Members.cypher │ ├── Community_Detection_7e_Write_Modularity.cypher │ ├── Community_Detection_8d_Conductance.cypher │ ├── Community_Detection_8d_Conductance_Members.cypher │ ├── Community_Detection_9_Community_Metrics.cypher │ ├── Community_Detection_Summary.cypher │ ├── Compare_Louvain_vs_Leiden_Results.cypher │ ├── Get_all_Packages_with_a_Community_Detection_Label.cypher │ ├── Set_Parameters.cypher │ ├── Type_communities_that_span_the_most_packages.cypher │ ├── Type_communities_that_span_the_most_packages_with_type_statistics.cypher │ ├── Type_communities_with_few_members_in_foreign_packages.cypher │ ├── Which_package_community_spans_multiple_artifacts.cypher │ ├── Which_package_community_spans_several_artifacts_and_how_are_the_packages_distributed.cypher │ └── Which_type_community_spans_several_artifacts_and_how_are_the_types_distributed.cypher ├── Count_nodes_and_relationships.cypher ├── Create_Java_Type_index_for_full_qualified_name.cypher ├── Create_Typescript_index_for_full_qualified_name.cypher ├── Create_Typescript_index_for_name.cypher ├── Cyclic_Dependencies │ ├── Cyclic_Dependencies.cypher │ ├── Cyclic_Dependencies_Breakdown.cypher │ ├── Cyclic_Dependencies_Breakdown_Backward_Only.cypher │ ├── Cyclic_Dependencies_Breakdown_Backward_Only_for_Typescript.cypher │ ├── Cyclic_Dependencies_Breakdown_for_Typescript.cypher │ ├── Cyclic_Dependencies_Concatenated.cypher │ ├── Cyclic_Dependencies_as_Nodes.cypher │ ├── Cyclic_Dependencies_between_Artifacts_as_unwinded_List.cypher │ └── Cyclic_Dependencies_for_Typescript.cypher ├── Data_verification_DEPENDS_ON_relationships.cypher ├── Dependencies_Projection │ ├── Dependencies_0_Check_Projectable.cypher │ ├── Dependencies_0_Prepare_Projection.cypher │ ├── Dependencies_0_Verify_Projectable.cypher │ ├── Dependencies_10_Delete_Label.cypher │ ├── Dependencies_11_Add_Label.cypher │ ├── Dependencies_12_Get_Projection_Statistics.cypher │ ├── Dependencies_13_Sample_Projected_Graph.cypher │ ├── Dependencies_14_Write_Batch_Data.cypher │ ├── Dependencies_1_Delete_Projection.cypher │ ├── Dependencies_2_Delete_Subgraph.cypher │ ├── Dependencies_3_Create_Projection.cypher │ ├── Dependencies_3b_Create_Multi_Relationship_Projection.cypher │ ├── Dependencies_3c_Create_Java_Type_Projection.cypher │ ├── Dependencies_3d_Create_Java_Method_Projection.cypher │ ├── Dependencies_4_Create_Undirected_Projection.cypher │ ├── Dependencies_4c_Create_Undirected_Java_Type_Projection.cypher │ ├── Dependencies_5_Create_Subgraph.cypher │ ├── Dependencies_6_Check_Projection_Nodes.cypher │ ├── Dependencies_7_Check_Projection_Relationships.cypher │ ├── Dependencies_8_Stream_Mutated.cypher │ ├── Dependencies_8_Stream_Mutated_Extended.cypher │ ├── Dependencies_8_Stream_Mutated_Grouped.cypher │ ├── Dependencies_8_Stream_Mutated_Value_Descending.cypher │ ├── Dependencies_9_Write_Mutated.cypher │ └── Set_Parameters.cypher ├── DependsOn_Relationship_Weights │ ├── Add_fine_grained_weights_for_Typescript_external_module_dependencies.cypher │ ├── Add_fine_grained_weights_for_Typescript_internal_module_dependencies.cypher │ ├── Add_weight10PercentInterfaces_to_Java_Package_DEPENDS_ON_relationships.cypher │ ├── Add_weight25PercentInterfaces_to_Java_Package_DEPENDS_ON_relationships.cypher │ ├── Add_weight_property_for_Java_Interface_Dependencies_to_Package_DEPENDS_ON_Relationship.cypher │ └── Add_weight_property_to_Java_Package_DEPENDS_ON_Relationship.cypher ├── Exploration │ ├── Explore_DEPENDS_ON_relationships.cypher │ ├── Explore_ExternalDeclaration.cypher │ ├── Explore_Module_outgoing_dependencies.cypher │ ├── Explore_Typescript_elements_with_same_globalFqn.cypher │ ├── Explore_Typescript_modules_overview.cypher │ ├── Explore_Typescript_modules_per_symboltype.cypher │ ├── Explore_Typescript_projects.cypher │ ├── Explore_common_globalfqn_prefix.cypher │ ├── Explore_degree_schema.cypher │ ├── Explore_external_Typescript_dependencies.cypher │ ├── Explore_node_properties.cypher │ ├── Explore_node_properties_non_null.cypher │ ├── Explore_node_relationships.cypher │ └── Explore_schema.cypher ├── Export_the_whole_database_as_CSV.cypher ├── External_Dependencies │ ├── External_module_usage_overall_for_Typescript.cypher │ ├── External_module_usage_per_internal_module_aggregated_for_Typescript.cypher │ ├── External_module_usage_per_internal_module_distribution_for_Typescript.cypher │ ├── External_module_usage_per_internal_module_sorted_for_Typescript.cypher │ ├── External_module_usage_spread_for_Typescript.cypher │ ├── External_namespace_usage_overall_for_Typescript.cypher │ ├── External_namespace_usage_per_internal_module_sorted_for_Typescript.cypher │ ├── External_namespace_usage_spread_for_Typescript.cypher │ ├── External_package_levels.cypher │ ├── External_package_name_elements.cypher │ ├── External_package_usage_overall.cypher │ ├── External_package_usage_per_artifact.cypher │ ├── External_package_usage_per_artifact_and_external_package.cypher │ ├── External_package_usage_per_artifact_and_package.cypher │ ├── External_package_usage_per_artifact_and_package_with_annotations.cypher │ ├── External_package_usage_per_artifact_distribution.cypher │ ├── External_package_usage_per_artifact_package_aggregated.cypher │ ├── External_package_usage_per_artifact_sorted.cypher │ ├── External_package_usage_per_artifact_sorted_top.cypher │ ├── External_package_usage_per_internal_package_count.cypher │ ├── External_package_usage_per_type.cypher │ ├── External_package_usage_per_type_distribution_with_annotations.cypher │ ├── External_package_usage_spread.cypher │ ├── External_second_level_package_usage_overall.cypher │ ├── External_second_level_package_usage_per_artifact_and_external_package.cypher │ ├── External_second_level_package_usage_spread.cypher │ ├── External_types_per_artifact_using_requires.cypher │ ├── Label_external_types_and_annotations.cypher │ ├── List_external_Java_types_used.cypher │ ├── List_external_modules_resolved_to_internal_ones_for_Typescript.cypher │ ├── Maven_POMs_and_their_declared_dependencies.cypher │ ├── Package_json_dependencies_by_package.cypher │ ├── Package_json_dependencies_combinations.cypher │ ├── Package_json_dependencies_combinations_with_versions.cypher │ ├── Package_json_dependencies_occurrence.cypher │ └── Remove_external_type_and_annotation_labels.cypher ├── General_Enrichment │ └── Add_file_name and_extension.cypher ├── GitLog │ ├── Add_CHANGED_TOGETHER_WITH_relationships_to_code_files.cypher │ ├── Add_CHANGED_TOGETHER_WITH_relationships_to_git_files.cypher │ ├── Add_HAS_PARENT_relationships_to_commits.cypher │ ├── Add_RESOLVES_TO_relationships_to_git_files_for_Java.cypher │ ├── Add_RESOLVES_TO_relationships_to_git_files_for_Typescript.cypher │ ├── Create_git_repository_node.cypher │ ├── Delete_git_log_data.cypher │ ├── Delete_plain_git_directory_file_nodes.cypher │ ├── Import_aggregated_git_log_csv_data.cypher │ ├── Import_git_log_csv_data.cypher │ ├── Index_absolute_file_name.cypher │ ├── Index_author_name.cypher │ ├── Index_change_span_year.cypher │ ├── Index_commit_hash.cypher │ ├── Index_commit_parent.cypher │ ├── Index_commit_sha.cypher │ ├── Index_file_name.cypher │ ├── Index_file_relative_path.cypher │ ├── List_ambiguous_git_files.cypher │ ├── List_git_file_directories_with_commit_statistics.cypher │ ├── List_git_files_by_resolved_label_and_extension.cypher │ ├── List_git_files_per_commit_distribution.cypher │ ├── List_git_files_that_were_changed_together.cypher │ ├── List_git_files_that_were_changed_together_all_in_one.cypher │ ├── List_git_files_that_were_changed_together_with_another_file.cypher │ ├── List_git_files_that_were_changed_together_with_another_file_all_in_one.cypher │ ├── List_git_files_with_commit_statistics_by_author.cypher │ ├── List_pairwise_changed_files.cypher │ ├── List_pairwise_changed_files_top_selected_metric.cypher │ ├── List_pairwise_changed_files_with_dependencies.cypher │ ├── List_unresolved_git_files.cypher │ ├── Set_commit_classification_properties.cypher │ ├── Set_number_of_aggregated_git_commits.cypher │ ├── Set_number_of_git_log_commits.cypher │ ├── Set_number_of_git_plugin_commits.cypher │ ├── Set_number_of_git_plugin_update_commits.cypher │ ├── Verify_code_to_git_file_unambiguous.cypher │ ├── Verify_git_missing_CHANGED_TOGETHER_WITH_properties.cypher │ └── Verify_git_to_code_file_unambiguous.cypher ├── Internal_Dependencies │ ├── Candidates_for_Interface_Segregation.cypher │ ├── Get_file_distance_as_shortest_contains_path_for_dependencies.cypher │ ├── How_many_classes_compared_to_all_existing_in_the_same_package_are_used_by_dependent_packages_across_different_artifacts.cypher │ ├── How_many_elements_compared_to_all_existing_are_used_by_dependent_modules_for_Typescript.cypher │ ├── How_many_packages_compared_to_all_existing_are_used_by_dependent_artifacts.cypher │ ├── Inter_scan_and_project_dependencies_of_Typescript_modules.cypher │ ├── Java_Artifact_build_levels_for_graphviz.cypher │ ├── List_all_Java_artifacts.cypher │ ├── List_all_Typescript_modules.cypher │ ├── List_elements_that_are_used_by_many_different_modules_for_Typescript.cypher │ ├── List_types_that_are_used_by_many_different_packages.cypher │ ├── Set_file_distance_as_shortest_contains_path_for_dependencies.cypher │ └── Typescript_Module_build_levels_for_graphviz.cypher ├── Java │ ├── Annotated_code_elements.cypher │ ├── Annotated_code_elements_per_artifact.cypher │ ├── Get_all_declared_and_inherited_methods_of_a_type.cypher │ ├── JakartaEE_REST_Annotations.cypher │ ├── JakartaEE_REST_Annotations_Nodes.cypher │ ├── Java_Reflection_usage.cypher │ ├── Java_Reflection_usage_detailed.cypher │ ├── Java_deprecated_element_usage.cypher │ ├── Java_deprecated_element_usage_detailed.cypher │ └── Spring_Web_Request_Annotations.cypher ├── Metrics │ ├── Calculate_and_set_Abstractness_for_Java.cypher │ ├── Calculate_and_set_Abstractness_for_Java_including_Subpackages.cypher │ ├── Calculate_and_set_Abstractness_for_Typescript.cypher │ ├── Calculate_and_set_Instability_for_Java.cypher │ ├── Calculate_and_set_Instability_for_Java_Including_Subpackages.cypher │ ├── Calculate_and_set_Instability_for_Typescript.cypher │ ├── Calculate_distance_between_abstractness_and_instability_for_Java.cypher │ ├── Calculate_distance_between_abstractness_and_instability_for_Java_including_subpackages.cypher │ ├── Calculate_distance_between_abstractness_and_instability_for_Typescript.cypher │ ├── Clear_all_metrics.cypher │ ├── Count_and_set_abstract_types.cypher │ ├── Get_Abstractness_for_Java.cypher │ ├── Get_Abstractness_for_Java_including_Subpackages.cypher │ ├── Get_Abstractness_for_Typescript.cypher │ ├── Get_Incoming_Java_Package_Dependencies.cypher │ ├── Get_Incoming_Java_Package_Dependencies_Including_Subpackages.cypher │ ├── Get_Incoming_Typescript_Module_Dependencies.cypher │ ├── Get_Instability_for_Java.cypher │ ├── Get_Instability_for_Java_Including_Subpackages.cypher │ ├── Get_Instability_for_Typescript.cypher │ ├── Get_Outgoing_Java_Package_Dependencies.cypher │ ├── Get_Outgoing_Java_Package_Dependencies_Including_Subpackages.cypher │ ├── Get_Outgoing_Typescript_Module_Dependencies.cypher │ ├── Incoming_Class_Dependencies.cypher │ ├── Incoming_Class_Method_Call_Dependencies.cypher │ ├── Incoming_Package_Dependencies.cypher │ ├── Incoming_Package_Dependencies_Including_Subpackages.cypher │ ├── Incoming_Package_Method_Call_Dependencies.cypher │ ├── Outgoing_Class_Dependencies.cypher │ ├── Outgoing_Class_Method_Call_Dependencies.cypher │ ├── Outgoing_Package_Dependencies.cypher │ ├── Outgoing_Package_Dependencies_Including_Subpackages.cypher │ ├── Outgoing_Package_Method_Call_Dependencies.cypher │ ├── Set_Incoming_Java_Package_Dependencies.cypher │ ├── Set_Incoming_Java_Package_Dependencies_Including_Subpackages.cypher │ ├── Set_Incoming_Java_Package_Method_Call_Dependencies.cypher │ ├── Set_Incoming_Java_Type_Dependencies.cypher │ ├── Set_Incoming_Typescript_Module_Dependencies.cypher │ ├── Set_Outgoing_Java_Package_Dependencies.cypher │ ├── Set_Outgoing_Java_Package_Dependencies_Including_Subpackages.cypher │ ├── Set_Outgoing_Java_Package_Method_Call_Dependencies.cypher │ ├── Set_Outgoing_Java_Type_Dependencies.cypher │ └── Set_Outgoing_Typescript_Module_Dependencies.cypher ├── Miscellaneous │ ├── Adding_the_artifact_name_temporarily_to_a_new_virtual_node_using_APOC.cypher │ ├── Adding_the_artifact_name_temporarily_to_the_Package_node_using_map_projection.cypher │ ├── Extract_Custom_Manifest_Entries.cypher │ ├── Get_Awesome_Procedures_On_Cypher_APOC_Version.cypher │ ├── Get_Graph_Data_Science_Library_Version.cypher │ ├── Get_Graph_Data_Science_System_Information.cypher │ └── Set_artifactName_property_on_every_Package_node.cypher ├── Node_Embeddings │ ├── Node_Embeddings_0a_Query_Calculated.cypher │ ├── Node_Embeddings_1a_Fast_Random_Projection_Estimate.cypher │ ├── Node_Embeddings_1b_Fast_Random_Projection_Statistics.cypher │ ├── Node_Embeddings_1c_Fast_Random_Projection_Mutate.cypher │ ├── Node_Embeddings_1d_Fast_Random_Projection_Stream.cypher │ ├── Node_Embeddings_1d_Fast_Random_Projection_Tuneable_Stream.cypher │ ├── Node_Embeddings_1e_Fast_Random_Projection_Tuneable_Write.cypher │ ├── Node_Embeddings_1e_Fast_Random_Projection_Write.cypher │ ├── Node_Embeddings_2a_Hash_GNN_Estimate.cypher │ ├── Node_Embeddings_2c_Hash_GNN_Mutate.cypher │ ├── Node_Embeddings_2d_Hash_GNN_Stream.cypher │ ├── Node_Embeddings_2d_Hash_GNN_Tuneable_Stream.cypher │ ├── Node_Embeddings_3a_Node2Vec_Estimate.cypher │ ├── Node_Embeddings_3c_Node2Vec_Mutate.cypher │ ├── Node_Embeddings_3d_Node2Vec_Stream.cypher │ ├── Node_Embeddings_3d_Node2Vec_Tuneable_Stream.cypher │ ├── Node_Embeddings_3e_Node2Vec_Write.cypher │ └── Set_Parameters.cypher ├── Overview │ ├── Cyclomatic_Method_Complexity_Distribution.cypher │ ├── Dependency_node_labels.cypher │ ├── Effective_Method_Line_Count_Distribution.cypher │ ├── Effective_lines_of_method_code_per_package.cypher │ ├── Effective_lines_of_method_code_per_type.cypher │ ├── Node_label_combination_count.cypher │ ├── Node_label_count.cypher │ ├── Node_labels_and_their_relationships.cypher │ ├── Number_of_elements_per_module_for_Typescript.cypher │ ├── Number_of_packages_per_artifact.cypher │ ├── Number_of_types_per_artifact.cypher │ ├── Overview_size.cypher │ ├── Overview_size_for_Typescript.cypher │ ├── Relationship_type_count.cypher │ ├── Words_for_Wordcloud.cypher │ ├── Words_for_git_author_Wordcloud_with_frequency.cypher │ └── Words_for_universal_Wordcloud.cypher ├── Path_Finding │ ├── Path_Finding_1_Create_Projection.cypher │ ├── Path_Finding_2_Estimate_Memory.cypher │ ├── Path_Finding_3_Depth_First_Search_Path.cypher │ ├── Path_Finding_4_Breadth_First_Search_Path.cypher │ ├── Path_Finding_5_All_pairs_shortest_path_distribution_overall.cypher │ ├── Path_Finding_5_All_pairs_shortest_path_distribution_per_project.cypher │ ├── Path_Finding_5_All_pairs_shortest_path_examples.cypher │ ├── Path_Finding_6_Longest_paths_contributors_for_graphviz.cypher │ ├── Path_Finding_6_Longest_paths_distribution_overall.cypher │ ├── Path_Finding_6_Longest_paths_distribution_per_project.cypher │ ├── Path_Finding_6_Longest_paths_examples.cypher │ ├── Path_Finding_6_Longest_paths_for_graphviz.cypher │ └── Set_Parameters.cypher ├── Similarity │ ├── Set_Parameters.cypher │ ├── Similarity_1a_Estimate.cypher │ ├── Similarity_1b_Statistics.cypher │ ├── Similarity_1c_Mutate.cypher │ ├── Similarity_1d_Stream_Mutated.cypher │ ├── Similarity_1e_Stream.cypher │ ├── Similarity_1f_Delete_Relationships.cypher │ ├── Similarity_1g_Write_Mutated.cypher │ ├── Similarity_1h_Write.cypher │ └── Similarity_1i_Write_Node_Properties.cypher ├── Topological_Sort │ ├── Set_Parameters.cypher │ ├── Topological_Sort_List.cypher │ ├── Topological_Sort_Query.cypher │ └── Topological_Sort_Write.cypher ├── Types │ ├── Label_base_java_types.cypher │ ├── Label_buildin_java_types.cypher │ ├── Label_resolved_duplicate_types.cypher │ ├── Remove_extended_type_labels.cypher │ └── Set_declaring_type_on_method_nodes.cypher ├── Typescript_Enrichment │ ├── Add_DEPENDS_ON_relationship_to_resolved_modules.cypher │ ├── Add_IS_IMPLEMENTED_IN_relationship_for_matching_declarations.cypher │ ├── Add_IS_IMPLEMENTED_IN_relationship_for_matching_modules.cypher │ ├── Add_module_properties.cypher │ ├── Add_name_to_property_on_projects.cypher │ ├── Add_name_to_property_on_scan_nodes.cypher │ ├── Add_namespace_property_on_nodes_from_linked_npm_packages.cypher │ ├── Count_internal_modules_resolving_external_ones.cypher │ ├── Index_module_name.cypher │ ├── Link_external_modules_to_corresponding_npm_dependency.cypher │ ├── Link_npm_dependencies_to_npm_packages.cypher │ ├── Link_projects_to_npm_packages.cypher │ ├── Mark_test_modules.cypher │ ├── Remove_duplicate_CONTAINS_relations_between_files.cypher │ ├── Set_localRootPath_for_modules.cypher │ ├── Verify_module_dependencies.cypher │ └── Verify_projects_linked_to_npm_packages.cypher ├── Validation │ ├── ValidateAlwaysFalse.cypher │ ├── ValidateGitHistory.cypher │ ├── ValidateJavaArtifactDependencies.cypher │ ├── ValidateJavaExternalDependencies.cypher │ ├── ValidateJavaInternalDependencies.cypher │ ├── ValidateJavaMethods.cypher │ ├── ValidateJavaPackageDependencies.cypher │ ├── ValidateJavaTypes.cypher │ └── ValidateTypescriptModuleDependencies.cypher └── Visibility │ ├── Global_relative_visibility_statistics_for_elements_for_Typescript.cypher │ ├── Global_relative_visibility_statistics_for_types.cypher │ ├── Relative_visibility_exported_elements_to_all_elements_per_module_for_Typescript.cypher │ └── Relative_visibility_public_types_to_all_types_per_package.cypher ├── domains └── anomaly-detection │ ├── README.md │ ├── anomalyDetectionCsv.sh │ ├── anomalyDetectionFeaturePlots.py │ ├── anomalyDetectionMarkdown.sh │ ├── anomalyDetectionPython.sh │ ├── anomalyDetectionVisualization.sh │ ├── documentation │ ├── Architecture.gv │ ├── Architecture.svg │ ├── README.md │ └── renderArchitecture.sh │ ├── explore │ ├── AnomalyDetectionExploration.ipynb │ ├── AnomalyDetectionIsolationForestExploration.ipynb │ ├── AnomalyDetectionTreeMapExploration.ipynb │ └── NodeEmbeddingsHyperparameterTuningExploration.ipynb │ ├── features │ ├── AnomalyDetectionFeature-ArticleRank-Exists.cypher │ ├── AnomalyDetectionFeature-ArticleRank-Write.cypher │ ├── AnomalyDetectionFeature-Betweenness-Exists.cypher │ ├── AnomalyDetectionFeature-Betweenness-Write.cypher │ ├── AnomalyDetectionFeature-LocalClusteringCoefficient-Exists.cypher │ ├── AnomalyDetectionFeature-LocalClusteringCoefficient-Write.cypher │ ├── AnomalyDetectionFeature-PageRank-Exists.cypher │ ├── AnomalyDetectionFeature-PageRank-Write.cypher │ ├── AnomalyDetectionFeature-PageToArticleRank-Exists.cypher │ ├── AnomalyDetectionFeature-PageToArticleRank-Write.cypher │ ├── AnomalyDetectionFeatures.cypher │ └── Set_Parameters_Manual.cypher │ ├── graphs │ ├── TopAuthority.cypher │ ├── TopBottleneck.cypher │ ├── TopBridge.cypher │ ├── TopCentral.template.gv │ ├── TopHub.cypher │ ├── TopOutlier.cypher │ └── anomalyDetectionGraphs.sh │ ├── labels │ ├── AnomalyDetectionArchetypeAuthority.cypher │ ├── AnomalyDetectionArchetypeBottleneck.cypher │ ├── AnomalyDetectionArchetypeBridge.cypher │ ├── AnomalyDetectionArchetypeHub.cypher │ ├── AnomalyDetectionArchetypeOutlier.cypher │ └── AnomalyDetectionArchetypeRemoveLabels.cypher │ ├── queries │ ├── AnomalyDetectionDependencyHungryOrchestrators.cypher │ ├── AnomalyDetectionFiles.cypher │ ├── AnomalyDetectionFragileStructuralBridges.cypher │ ├── AnomalyDetectionHiddenBridgeNodes.cypher │ ├── AnomalyDetectionNodeCount.cypher │ ├── AnomalyDetectionOverReferencesUtilities.cypher │ ├── AnomalyDetectionPopularBottlenecks.cypher │ ├── AnomalyDetectionPotentialImbalancedRoles.cypher │ ├── AnomalyDetectionPotentialOverEngineerOrIsolated.cypher │ ├── AnomalyDetectionSilentCoordinators.cypher │ └── AnomalyDetectionUnexpectedCentralNodes.cypher │ ├── reset │ ├── AnomalyDetectionReset-Algorithms.cypher │ ├── AnomalyDetectionReset-Anomalies.cypher │ ├── AnomalyDetectionReset-Clustering.cypher │ └── AnomalyDetectionReset-Embeddings.cypher │ ├── summary │ ├── AnomaliesDeepDiveArchetypes.cypher │ ├── AnomaliesDeepDiveOverview.cypher │ ├── AnomaliesInTotal.cypher │ ├── AnomaliesPerAbstractionLayer.cypher │ ├── AnomalyDeepDiveTopAnomalies.cypher │ ├── anomalyDetectionSummary.sh │ ├── report.template.md │ ├── report_deep_dive.template.md │ ├── report_deep_dive_anomaly_plots.template.md │ ├── report_deep_dive_cluster_focus_plots.template.md │ ├── report_deep_dive_cluster_noise_plots.template.md │ ├── report_deep_dive_cluster_overall_plot.template.md │ ├── report_deep_dive_feature_plots.template.md │ ├── report_no_anomaly_detection_data.template.md │ ├── report_no_anomaly_detection_graphs.template.md │ ├── report_no_anomaly_detection_treemaps.template.md │ └── report_no_dependency_data.template.md │ ├── treemapVisualizations.py │ ├── tunedAnomalyDetectionExplained.py │ ├── tunedLeidenCommunityDetection.py │ ├── tunedNodeEmbeddingClustering.py │ ├── umap2dNodeEmbeddings.py │ └── visualization.py ├── images ├── DALL-E-Mini-Graph-Pipeline-Logo-2.png ├── DALL-E-Mini-Graph-Pipeline-Logo.png └── nano-banana GraphPipeline-1c.png ├── init.sh ├── jupyter ├── DependenciesGraphJava.ipynb ├── DependenciesGraphTypescript.ipynb ├── ExternalDependenciesJava.ipynb ├── ExternalDependenciesTypescript.ipynb ├── GitHistoryExploration.ipynb ├── GitHistoryGeneral.ipynb ├── InternalDependenciesJava.ipynb ├── InternalDependenciesTypescript.ipynb ├── MethodMetricsJava.ipynb ├── NodeEmbeddingsJava.ipynb ├── NodeEmbeddingsTypescript.ipynb ├── ObjectOrientedDesignMetricsJava.ipynb ├── ObjectOrientedDesignMetricsTypescript.ipynb ├── OverviewGeneral.ipynb ├── OverviewJava.ipynb ├── OverviewTypescript.ipynb ├── PathFindingJava.ipynb ├── PathFindingTypescript.ipynb ├── VisibilityMetricsJava.ipynb ├── VisibilityMetricsTypescript.ipynb └── Wordcloud.ipynb ├── markdown-lint-check-config.json ├── renovate-presets ├── README.md └── code-graph-analysis-workflow-latest-digest.json5 ├── renovate.json ├── requirements.txt └── scripts ├── ENVIRONMENT_VARIABLES.md ├── SCRIPTS.md ├── activateCondaEnvironment.sh ├── activatePythonEnvironment.sh ├── analysis └── analyze.sh ├── checkCompatibility.sh ├── cleanupAfterReportGeneration.sh ├── cloneGitRepository.sh ├── configuration ├── template-neo4j-low-memory.conf ├── template-neo4j-remote-jqassistant-continue-on-error.yaml ├── template-neo4j-remote-jqassistant.yaml ├── template-neo4j-v4-low-memory.conf ├── template-neo4j-v4.conf ├── template-neo4j.conf ├── template-neo4jv4-jqassistant.yaml ├── template-neo4jv5-jqassistant-continue-on-error.yaml └── template-neo4jv5-jqassistant.yaml ├── copyPackageJsonFiles.sh ├── createAggregatedGitLogCsv.sh ├── createGitLogCsv.sh ├── detectChangedFiles.sh ├── documentation ├── appendEnvironmentVariables.sh ├── generateCypherReference.sh ├── generateEnvironmentVariableReference.sh └── generateScriptReference.sh ├── download.sh ├── downloadMavenArtifact.sh ├── downloadMavenArtifacts.sh ├── downloader ├── downloadAntDesign.sh ├── downloadAxonFramework.sh ├── downloadReactRouter.sh └── downloadTypescriptProject.sh ├── examples ├── analyzeAntDesign.sh ├── analyzeAxonFramework.sh ├── analyzeReactRouter.sh └── detectLatestGitTag.sh ├── executeJupyterNotebook.sh ├── executeJupyterNotebookReport.sh ├── executeQuery.sh ├── executeQueryFunctions.sh ├── findPathsToScan.sh ├── importGit.sh ├── markdown ├── embedMarkdownIncludes.sh ├── formatQueryResultAsMarkdownTable.sh ├── testEmbedMarkdownIncludes.sh ├── testFormatQueryResultAsMarkdownTable.sh ├── test_data_cypher_query_result_simple.json ├── test_data_cypher_query_result_simple_expected.md ├── test_data_cypher_query_result_with_array.json └── test_data_cypher_query_result_with_array_expected.md ├── operatingSystemFunctions.sh ├── parseCsvFunctions.sh ├── patches └── @jqassistant+ts-lce+1.2.0.patch ├── prepareAnalysis.sh ├── profiles ├── Default.sh ├── Neo4j-latest-continue-on-scan-errors.sh ├── Neo4j-latest-low-memory.sh ├── Neo4j-latest.sh ├── Neo4jv4-low-memory.sh ├── Neo4jv4.sh ├── Neo4jv5-continue-on-scan-errors.sh ├── Neo4jv5-low-memory.sh └── Neo4jv5.sh ├── projectionFunctions.sh ├── reports ├── ArtifactDependenciesCsv.sh ├── CentralityCsv.sh ├── CommunityCsv.sh ├── ExternalDependenciesCsv.sh ├── GitHistoryCsv.sh ├── InternalDependenciesCsv.sh ├── InternalDependenciesVisualization.sh ├── JavaCsv.sh ├── NodeEmbeddingsCsv.sh ├── ObjectOrientedDesignMetricsCsv.sh ├── OverviewCsv.sh ├── PathFindingCsv.sh ├── PathFindingVisualization.sh ├── SimilarityCsv.sh ├── TopologicalSortCsv.sh ├── VisibilityMetricsCsv.sh └── compilations │ ├── AllReports.sh │ ├── CsvReports.sh │ ├── DatabaseCsvExportReports.sh │ ├── JupyterReports.sh │ ├── MarkdownReports.sh │ ├── PythonReports.sh │ └── VisualizationReports.sh ├── resetAndScan.sh ├── resetAndScanChanged.sh ├── runTests.sh ├── scanTypescript.sh ├── setupJQAssistant.sh ├── setupNeo4j.sh ├── setupNeo4jInitialPassword.sh ├── sortOutExternalJavaJarFiles.sh ├── startNeo4j.sh ├── stopNeo4j.sh ├── testCloneGitRepository.sh ├── testDetectChangedFiles.sh ├── testDownloadMavenArtifacts.sh ├── visualization ├── convertQueryResultCsvToGraphVizDotFile.sh ├── renderGraphVizSVG.sh ├── templates │ └── default.template.gv └── visualizeQueryResults.sh └── 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