├── README.md └── LICENSE /README.md: -------------------------------------------------------------------------------- 1 | # GeneralizedMedSeg 2 | Recent open-source papers on domain adaption/generalization for medical image segmentation 3 | 4 | ## Paper and Code 5 | 6 | 7 | 8 | | Date | First Author | Title | Conf./Journal | Code | 9 | | :------: | :-------------------------------: | :-----------------: | :-----------------------: | :----------------------: | 10 | | 202108 | Luyan Liu | S-CUDA: Self-Cleansing Unsupervised Domain Adaptation for Medical Image Segmentation| [MedIA](https://www.sciencedirect.com/science/article/pii/S1361841521002590) | [code](https://github.com/zzdxjtu/S-cuda) | 11 | | 202108 | Xiaoting Han | Deep Symmetric Adaptation Network for Cross-modality Medical Image Segmentation| [TMI](https://ieeexplore.ieee.org/document/9514499) | [code](https://github.com/ting2696/Deep-Symmetric-Adaptation-Network) | 12 | | 202108 | Rikiya Yamashita | Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation | [TMI](https://ieeexplore.ieee.org/document/9503389) | [Pytorch](https://github.com/rikiyay/style-transfer-for-digital-pathology) | 13 | | 202107 | [Spyridon Thermos](https://scholar.google.com.hk/citations?user=AySuDPYAAAAJ&hl=zh-CN&oi=sra) | Controllable cardiac synthesis via disentangled anatomy arithmetic | [arXiv](https://arxiv.org/abs/2107.01748) | [Pytorch](https://github.com/vios-s/DAA-GAN) | 14 | | 202107 | [Chen Chen](https://scholar.google.com.hk/citations?user=gPuRZmgAAAAJ&hl=zh-CN&oi=sra) | Cooperative Training and Latent Space Data Augmentation for Robust Medical Image Segmentation | [arXiv](https://arxiv.org/pdf/2107.01079.pdf) | [Pytorch](https://github.com/cherise215/Cooperative_Training_and_Latent_Space_Data_Augmentation) | 15 | | 202104 | Chenhao Pei | Disentangle domain features for cross-modality cardiac image segmentation| [MedIA](https://doi.org/10.1016/j.media.2021.102078) | [TF](https://github.com/Endless-Hao/DDFSeg) | 16 | | 20210322 | [M. Bateson](https://scholar.google.com/citations?user=pL1OxtwAAAAJ&hl=en&oi=sra) | Constrained Domain Adaptation for Image Segmentation | [TMI](https://ieeexplore.ieee.org/document/9382339) | [Pytorch](https://github.com/mathilde-b/CDA) | 17 | | 20210317 | [Sulaiman Vesal](https://sulaimanvesal.github.io/) | Adapt Everywhere: Unsupervised Adaptation of Point-Clouds and Entropy Minimisation for Multi-modal Cardiac Image Segmentation | [TMI](https://ieeexplore.ieee.org/document/9380742) | [Pytorch](https://github.com/sulaimanvesal/PointCloudUDA) | 18 | | 202103 | [Bo Zhou](https://scholar.google.com.hk/citations?user=94Rsf5wAAAAJ&hl=zh-CN&oi=sra) | Anatomy-guided multimodal registration by learning segmentation without ground truth: Application to intraprocedural CBCT/MR liver segmentation and registration | [MedIA](https://doi.org/10.1016/j.media.2021.102041) | [Pytorch](https://github.com/bbbbbbzhou/APA2Seg-Net) | 19 | | 202102 | [Neerav Karani](https://scholar.google.com/citations?user=neLQ1MQAAAAJ&hl=en&oi=sra) | Test-time adaptable neural networks for robust medical image segmentation | [MedIA](https://doi.org/10.1016/j.media.2020.101907) [arXiv](https://arxiv.org/abs/2004.04668) | [TF](https://github.com/neerakara/test-time-adaptable-neural-networks-for-domain-generalization) | 20 | | 20210212 | [Devavrat Tomar](https://scholar.google.com/citations?user=S7DELUgAAAAJ&hl=en&oi=sra) | Self-Attentive Spatial Adaptive Normalization for Cross-Modality Domain Adaptation | [TMI](https://ieeexplore.ieee.org/document/9354186) | [Pytorch](https://github.com/devavratTomar/sasan) | 21 | | 202101 | [Reuben Dorent](https://scholar.google.com/citations?user=xdECLMkAAAAJ&hl=en&oi=sra) | Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets | [MedIA](https://doi.org/10.1016/j.media.2020.101862) | [Pytorch](https://github.com/ReubenDo/jSTABL) | 22 | | 20210120 | [Sven Koehler](https://scholar.google.com/citations?user=A9BaTFgAAAAJ&hl=zh-CN&oi=sra) | Unsupervised Domain Adaptation from Axial to Short-Axis Multi-Slice Cardiac MR Images by Incorporating Pretrained Task Networks | [TMI](https://ieeexplore.ieee.org/document/9328840), [arXiv](https://arxiv.org/abs/2101.07653) | [TF 2.X](https://github.com/Cardio-AI/3d-mri-domain-adaptation) | 23 | | 20200812 | Fuping Wu | CF Distance: A New Domain Discrepancy Metric and Application to Explicit Domain Adaptation for Cross-Modality Cardiac Image Segmentation | [TMI](https://ieeexplore.ieee.org/document/9165963) | [Pytorch](https://github.com/FupingWu90/CFDnet) | 24 | | 202007 | NA Koohbanani| NuClick: A deep learning framework for interactive segmentation of microscopic images | [MedIA](https://doi.org/10.1016/j.media.2020.101771) | [Keras](https://github.com/navidstuv/NuClick ) | 25 | | 20200723 | [Jue Jiang](https://scholar.google.com/citations?user=gJhLEPsAAAAJ&hl=zh-CN&oi=sra) | PSIGAN: Joint Probabilistic Segmentation and Image Distribution Matching for Unpaired Cross-Modality Adaptation-Based MRI Segmentation | [TMI](https://ieeexplore.ieee.org/document/9146572), [arXiv](https://arxiv.org/abs/2007.09465) | [Pytorch](https://github.com/harveerar/PSIGAN) | 26 | | 20200713 | [Prashant Pandey](https://scholar.google.com/citations?user=BPbALXsAAAAJ&hl=zh-CN&oi=sra) | Target-Independent Domain Adaptation for WBC Classification Using Generative Latent Search | [TMI](https://ieeexplore.ieee.org/document/9139471) | [Keras](https://github.com/prinshul/WBC-Classification-UDA) | 27 | | 202004 | Xu Chen| Diverse data augmentation for learning image segmentation with cross-modality annotations | [MedIA](https://doi.org/10.1016/j.media.2021.102060) | [TF]( https://github.com/carrenD/Medical-Cross-Modality-Domain-Adaptation) | 28 | | 20200210 | [Cheng Chen](https://scholar.google.com/citations?user=bRe3FlcAAAAJ&hl=zh-CN&oi=sra) | Unsupervised Bidirectional Cross-Modality Adaptation via Deeply Synergistic Image and Feature Alignment for Medical Image Segmentation | [TMI](https://ieeexplore.ieee.org/document/8988158) | [TF](https://github.com/cchen-cc/SIFA) | 29 | | 20200117 | Kang Li | Dual-Teacher++: Exploiting Intra-domain and Inter-domain Knowledge with Reliable Transfer for Cardiac Segmentation | [TMI](https://ieeexplore.ieee.org/document/9261435) | [Pytorch](https://github.com/kli-lalala/Dual-Teacher-) | 30 | | 201910 | [Abhijit Guha Roy](https://scholar.google.com.hk/citations?user=r2ulM_sAAAAJ&hl=zh-CN&oi=sra) | ‘Squeeze & excite’ guided few-shot segmentation of volumetric images | [MedIA](https://doi.org/10.1016/j.media.2019.101587) | [Pytorch](https://github.com/abhi4ssj/few-shot-segmentation) | 31 | | 20190930 | [Tianyang Zhang](https://scholar.google.com/citations?user=RiLAQnoAAAAJ&hl=zh-CN&oi=sra) | Noise Adaptation Generative Adversarial Network for Medical Image Analysis | [TMI](https://ieeexplore.ieee.org/document/8852672) | [Pytorch](https://github.com/NeilZhang-IMED/NAGAN) | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | Apache License 2 | Version 2.0, January 2004 3 | http://www.apache.org/licenses/ 4 | 5 | TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 6 | 7 | 1. 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