├── Motif_db ├── Amarillovirales.RdRp_motifs.fasta ├── Birnaviridae.RdRp_motifs.fasta ├── Botybirnavirus.RdRp_motifs.fasta ├── Chunqiuviricetes.RdRp_motifs.fasta ├── Cryppavirales.RdRp_motifs.fasta ├── Durnavirales.RdRp_motifs.fasta ├── Ellioviricetes.RdRp_motifs.fasta ├── Ghabrivirales.RdRp_motifs.fasta ├── Hepelivirales.RdRp_motifs.fasta ├── Insthoviricetes.RdRp_motifs.fasta ├── Levivirales.RdRp_motifs.fasta ├── Martellivirales.RdRp_motifs.fasta ├── Milneviricetes.RdRp_motifs.fasta ├── Mindivirales.RdRp_motifs.fasta ├── Monjiviricetes.RdRp_motifs.fasta ├── Nidovirales.RdRp_motifs.fasta ├── Nodamuvirales.RdRp_motifs.fasta ├── Ourlivirales.RdRp_motifs.fasta ├── Patatavirales.RdRp_motifs.fasta ├── Picornavirales.RdRp_motifs.fasta ├── Reovirales.RdRp_motifs.fasta ├── Sobelivirales.RdRp_motifs.fasta ├── Stellavirales.RdRp_motifs.fasta ├── Tolivirales.RdRp_motifs.fasta ├── Tymovirales.RdRp_motifs.fasta ├── Wolframvirales.RdRp_motifs.fasta ├── Yunchangviricetes.RdRp_motifs.fasta └── unclassified_RNA_virus.RdRp_motifs.fasta ├── PDB_virRdRp_acc.txt ├── Phylogenies ├── Birnaviridae.CLUSTALO_0.4.fasta ├── Botybirnavirus.CLUSTALO_0.4.fasta ├── Duplornaviricota.CLUSTALO_0.4.fasta ├── Kitrinoviricota.CLUSTALO_0.4.fasta ├── Lenarviricota.CLUSTALO_0.4.fasta ├── Negarnaviricota.CLUSTALO_0.4.fasta ├── Permutotetraviridae.CLUSTALO_0.4.fasta ├── Pisuviricota.CLUSTALO_0.4.fasta ├── RdRp-scan.CLUSTALO_0.4.FAST_TREE └── RdRp-scan.CLUSTALO_0.4.fasta.zip ├── Profile_db_and_alignments ├── ALL_FINAL_RdRp_cores_0.3.clstr_1283.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_134.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_197.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_295.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_297.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_298.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_373.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_378.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_441.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_504.Palmdb.0.4.fasta.CLUSTALO ├── ALL_FINAL_RdRp_cores_0.3.clstr_552.Palmdb.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Amarillovirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Birnaviridae.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Botybirnavirus.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Chunqiuviricetes.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Cryppavirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Durnavirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Ellioviricetes.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Ghabrivirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Hepelivirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Insthoviricetes.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Levivirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Martellivirales_Cter_GDD.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Martellivirales_Nter_GDD.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Milneviricetes.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Mindivirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Monjiviricetes_1.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Monjiviricetes_2.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Nidovirales_Cter_GDD.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Nidovirales_Nter_GDD.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Nodamuvirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Ourlivirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Patatavirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Permutotetraviridae.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Picornavirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Reovirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Sobelivirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Stellavirales.0.4.fasta.CLUSTALO ├── ALL_NCBI_Palmdb_RdRp.Tolivirales_Cter_GDD.0.4.fasta.CLUSTALO ├── 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