├── .gitignore ├── LICENSE ├── README.md ├── examples ├── 3kg │ ├── README.md │ └── config │ │ ├── finetuning │ │ └── ecg_transformer │ │ │ ├── diagnosis.yaml │ │ │ └── identification.yaml │ │ └── pretraining │ │ └── ecg_transformer │ │ └── 3kg.yaml ├── cmsc │ ├── README.md │ └── config │ │ ├── finetuning │ │ └── ecg_transformer │ │ │ ├── diagnosis.yaml │ │ │ └── identification.yaml │ │ └── pretraining │ │ └── ecg_transformer │ │ ├── cmsc.yaml │ │ └── cmsc_rlm.yaml ├── m3ae │ ├── README.md │ └── config │ │ ├── finetuning │ │ └── ecg_question_answering │ │ │ └── base.yaml │ │ └── pretraining │ │ └── w2v-cmsc_bert.yaml ├── medvill │ ├── README.md │ └── config │ │ ├── finetuning │ │ └── ecg_question_answering │ │ │ ├── base.yaml │ │ │ └── small.yaml │ │ └── pretraining │ │ └── medvill.yaml ├── scratch │ ├── ecg_classification │ │ ├── ecg_transformer │ │ │ ├── diagnosis_physionet2021.yaml │ │ │ ├── multi_head_cls_path_dataset.yaml │ │ │ └── multi_label_cls_path_dataset.yaml │ │ ├── infer.yaml │ │ └── resnet │ │ │ ├── nejedly2021_total.yaml │ │ │ └── se_wrn_total.yaml │ ├── ecg_identification │ │ └── identification.yaml │ ├── ecg_question_answering │ │ ├── blind_transformer │ │ │ └── base.yaml │ │ ├── deaf_transformer │ │ │ └── base.yaml │ │ ├── ecg_transformer │ │ │ ├── base.yaml │ │ │ └── small.yaml │ │ ├── infer.yaml │ │ └── resnet_lstm │ │ │ └── deeper.yaml │ └── ecg_segmentation │ │ └── unet │ │ ├── unet3plus_12leads_aug.yaml │ │ ├── unet3plus_aug.yaml │ │ ├── unet3plus_aug_cgm.yaml │ │ └── unet3plus_cgm.yaml ├── simclr │ ├── README.md │ └── config │ │ ├── finetuning │ │ └── ecg_transformer │ │ │ ├── diagnosis.yaml │ │ │ └── identification.yaml │ │ └── pretraining │ │ └── ecg_transformer │ │ ├── simclr_augs.yaml │ │ └── simclr_rlm.yaml ├── w2v_cmsc │ ├── README.md │ └── config │ │ ├── finetuning │ │ └── ecg_transformer │ │ │ ├── diagnosis.yaml │ │ │ ├── grounding_classification │ │ │ └── base_total.yaml │ │ │ └── identification.yaml │ │ └── pretraining │ │ ├── w2v_cmsc.yaml │ │ ├── w2v_cmsc_augs.yaml │ │ ├── w2v_cmsc_rlm.yaml │ │ └── w2v_cmsc_rlm_small.yaml └── wav2vec2 │ ├── README.md │ └── config │ ├── finetuning │ ├── diagnosis.yaml │ └── identification.yaml │ └── pretraining │ ├── w2v.yaml │ ├── w2v_augs.yaml │ └── w2v_rlm.yaml ├── fairseq_cli ├── __init__.py ├── hydra_inference.py ├── hydra_train.py ├── hydra_validate.py ├── inference.py ├── train.py └── validate.py ├── fairseq_signals ├── __init__.py ├── clib │ ├── cuda │ │ ├── ngram_repeat_block_cuda.cpp │ │ └── ngram_repeat_block_cuda_kernel.cu │ ├── libbase │ │ └── balanced_assignment.cpp │ ├── libnat │ │ └── edit_dist.cpp │ └── libnat_cuda │ │ ├── binding.cpp │ │ ├── edit_dist.cu │ │ └── edit_dist.h ├── config │ ├── __init__.py │ └── config.yaml ├── criterions │ ├── 3kg_criterion.py │ ├── __init__.py │ ├── arcface_criterion.py │ ├── binary_cross_entropy.py │ ├── binary_cross_entropy_with_logits.py │ ├── cmsc_criterion.py │ ├── composite_criterion.py │ ├── criterion.py │ ├── cross_entropy.py │ ├── m3ae_criterion.py │ ├── medvill_criterion.py │ ├── mse_criterion.py │ ├── multi_head_binary_cross_entropy.py │ ├── simclr_criterion.py │ └── wav2vec2_criterion.py ├── data │ ├── __init__.py │ ├── data_utils.py │ ├── data_utils_fast.pyx │ ├── dataset.py │ ├── ecg │ │ ├── __init__.py │ │ ├── augmentations.py │ │ ├── cmsc_ecg_dataset.py │ │ ├── ecg_utils.py │ │ ├── identification_ecg_dataset.py │ │ ├── perturb_ecg_dataset.py │ │ ├── preprocess │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── combine_manifests.py │ │ │ ├── convert_to_cmsc_manifest.py │ │ │ ├── manifest.py │ │ │ ├── manifest_identification.py │ │ │ ├── manifest_physionet2021.py │ │ │ ├── preprocess_ecgiddb.py │ │ │ ├── preprocess_ludb.py │ │ │ ├── preprocess_physionet2021.py │ │ │ └── preprocess_ptbxl.py │ │ ├── raw_ecg_dataset.py │ │ └── segmentation_ecg_dataset.py │ ├── ecg_text │ │ ├── __init__.py │ │ ├── ecg_qa_dataset.py │ │ ├── ecg_text_dataset.py │ │ └── preprocess │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── manifest.py │ │ │ ├── preprocess_ecgqa.py │ │ │ ├── preprocess_ecgqa_for_classification.py │ │ │ ├── preprocess_mimic_iv_ecg.py │ │ │ ├── preprocess_ptbxl.py │ │ │ └── ptbxl_database_translated.csv │ └── iterators.py ├── dataclass │ ├── __init__.py │ ├── configs.py │ ├── constants.py │ ├── initialize.py │ └── utils.py ├── distributed │ ├── __init__.py │ ├── distributed_timeout_wrapper.py │ ├── fully_sharded_data_parallel.py │ ├── legacy_distributed_data_parallel.py │ ├── module_proxy_wrapper.py │ └── utils.py ├── logging │ ├── __init__.py │ ├── meters.py │ ├── metrics.py │ └── progress_bar.py ├── models │ ├── __init__.py │ ├── classification │ │ ├── __init__.py │ │ ├── ecg_transformer_classifier.py │ │ └── resnet_classifier.py │ ├── convnet │ │ ├── __init__.py │ │ └── convnet.py │ ├── distributed_model.py │ ├── ecg_language_transformer.py │ ├── ecg_transformer.py │ ├── finetuning_model.py │ ├── identification │ │ ├── __init__.py │ │ └── arcface.py │ ├── lstm.py │ ├── m3ae │ │ ├── __init__.py │ │ ├── bert_model.py │ │ ├── m3ae.py │ │ └── m3ae_qa.py │ ├── medvill │ │ ├── __init__.py │ │ └── medvill.py │ ├── model.py │ ├── pretraining_model.py │ ├── question_answer │ │ ├── __init__.py │ │ ├── blind_transformer.py │ │ ├── deaf_transformer.py │ │ ├── ecg_language_transformer_classifier.py │ │ └── resnet_lstm_classifier.py │ ├── resnet.py │ ├── resnet_lstm.py │ ├── se_wrn.py │ ├── segmentation │ │ ├── __init__.py │ │ └── unet_segmentor.py │ ├── transformer.py │ ├── unet.py │ ├── vggnet.py │ └── wav2vec2 │ │ ├── __init__.py │ │ ├── wav2vec2.py │ │ └── wav2vec2_cmsc.py ├── modules │ ├── __init__.py │ ├── conv_feature_extraction.py │ ├── conv_positional_encoding.py │ ├── dropout.py │ ├── fp32_group_norm.py │ ├── gather_layer.py │ ├── grad_multiply.py │ ├── gumbel_vector_quantizer.py │ ├── layer_norm.py │ ├── multi_head_attention.py │ ├── quant_noise.py │ ├── same_pad.py │ ├── transformer_encoder.py │ ├── transformer_encoder_layer.py │ └── transpose_last.py ├── optim │ ├── __init__.py │ ├── adam.py │ ├── dynamic_loss_scalar.py │ ├── fp16_optimizer.py │ ├── lr_scheduler │ │ ├── __init__.py │ │ ├── fairseq_lr_scheduler.py │ │ ├── fixed_schedule.py │ │ ├── step_lr_scheduler.py │ │ └── tri_stage_lr_scheduler.py │ └── optimizer.py ├── tasks │ ├── __init__.py │ ├── ecg_classification.py │ ├── ecg_identification.py │ ├── ecg_pretraining.py │ ├── ecg_question_answering.py │ ├── ecg_segmentation.py │ ├── ecg_text_pretaining.py │ └── task.py ├── trainer.py ├── utils │ ├── __init__.py │ ├── checkpoint_utils.py │ ├── file.py │ ├── file_io.py │ ├── nan_detector.py │ ├── options.py │ ├── pandas.py │ ├── pdb.py │ ├── registry.py │ ├── splits.py │ ├── store.py │ └── utils.py └── version.txt ├── pyproject.toml ├── scripts └── preprocess │ ├── ecg │ ├── README.md │ ├── code_15_labels.py │ ├── code_15_signals.py │ ├── example_records.py │ ├── example_signals.py │ ├── mimic_iv_ecg_records.py │ ├── mimic_iv_ecg_signals.py │ ├── muse_records.py │ ├── muse_signals.py │ ├── physionet2021_labels.py │ ├── physionet2021_records.py │ ├── physionet2021_signals.py │ └── preprocess.py │ ├── manifests.py │ ├── prepare_clf_labels.py │ ├── splits.py │ └── subset_manifest.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/README.md -------------------------------------------------------------------------------- /examples/3kg/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/3kg/README.md -------------------------------------------------------------------------------- /examples/3kg/config/finetuning/ecg_transformer/diagnosis.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/3kg/config/finetuning/ecg_transformer/diagnosis.yaml -------------------------------------------------------------------------------- /examples/3kg/config/finetuning/ecg_transformer/identification.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/3kg/config/finetuning/ecg_transformer/identification.yaml -------------------------------------------------------------------------------- /examples/3kg/config/pretraining/ecg_transformer/3kg.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/3kg/config/pretraining/ecg_transformer/3kg.yaml -------------------------------------------------------------------------------- /examples/cmsc/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/cmsc/README.md -------------------------------------------------------------------------------- /examples/cmsc/config/finetuning/ecg_transformer/diagnosis.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/cmsc/config/finetuning/ecg_transformer/diagnosis.yaml -------------------------------------------------------------------------------- /examples/cmsc/config/finetuning/ecg_transformer/identification.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/cmsc/config/finetuning/ecg_transformer/identification.yaml -------------------------------------------------------------------------------- /examples/cmsc/config/pretraining/ecg_transformer/cmsc.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/cmsc/config/pretraining/ecg_transformer/cmsc.yaml -------------------------------------------------------------------------------- /examples/cmsc/config/pretraining/ecg_transformer/cmsc_rlm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/cmsc/config/pretraining/ecg_transformer/cmsc_rlm.yaml -------------------------------------------------------------------------------- /examples/m3ae/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/m3ae/README.md -------------------------------------------------------------------------------- /examples/m3ae/config/finetuning/ecg_question_answering/base.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/m3ae/config/finetuning/ecg_question_answering/base.yaml -------------------------------------------------------------------------------- /examples/m3ae/config/pretraining/w2v-cmsc_bert.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/m3ae/config/pretraining/w2v-cmsc_bert.yaml -------------------------------------------------------------------------------- /examples/medvill/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/medvill/README.md -------------------------------------------------------------------------------- /examples/medvill/config/finetuning/ecg_question_answering/base.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/medvill/config/finetuning/ecg_question_answering/base.yaml -------------------------------------------------------------------------------- /examples/medvill/config/finetuning/ecg_question_answering/small.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/medvill/config/finetuning/ecg_question_answering/small.yaml -------------------------------------------------------------------------------- /examples/medvill/config/pretraining/medvill.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/medvill/config/pretraining/medvill.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_classification/ecg_transformer/diagnosis_physionet2021.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_classification/ecg_transformer/diagnosis_physionet2021.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_classification/ecg_transformer/multi_head_cls_path_dataset.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_classification/ecg_transformer/multi_head_cls_path_dataset.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_classification/ecg_transformer/multi_label_cls_path_dataset.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_classification/ecg_transformer/multi_label_cls_path_dataset.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_classification/infer.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_classification/infer.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_classification/resnet/nejedly2021_total.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_classification/resnet/nejedly2021_total.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_classification/resnet/se_wrn_total.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_classification/resnet/se_wrn_total.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_identification/identification.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_identification/identification.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_question_answering/blind_transformer/base.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_question_answering/blind_transformer/base.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_question_answering/deaf_transformer/base.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_question_answering/deaf_transformer/base.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_question_answering/ecg_transformer/base.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_question_answering/ecg_transformer/base.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_question_answering/ecg_transformer/small.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_question_answering/ecg_transformer/small.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_question_answering/infer.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_question_answering/infer.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_question_answering/resnet_lstm/deeper.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_question_answering/resnet_lstm/deeper.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_segmentation/unet/unet3plus_12leads_aug.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_segmentation/unet/unet3plus_12leads_aug.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_segmentation/unet/unet3plus_aug.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_segmentation/unet/unet3plus_aug.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_segmentation/unet/unet3plus_aug_cgm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_segmentation/unet/unet3plus_aug_cgm.yaml -------------------------------------------------------------------------------- /examples/scratch/ecg_segmentation/unet/unet3plus_cgm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/scratch/ecg_segmentation/unet/unet3plus_cgm.yaml -------------------------------------------------------------------------------- /examples/simclr/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/simclr/README.md -------------------------------------------------------------------------------- /examples/simclr/config/finetuning/ecg_transformer/diagnosis.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/simclr/config/finetuning/ecg_transformer/diagnosis.yaml -------------------------------------------------------------------------------- /examples/simclr/config/finetuning/ecg_transformer/identification.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/simclr/config/finetuning/ecg_transformer/identification.yaml -------------------------------------------------------------------------------- /examples/simclr/config/pretraining/ecg_transformer/simclr_augs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/simclr/config/pretraining/ecg_transformer/simclr_augs.yaml -------------------------------------------------------------------------------- /examples/simclr/config/pretraining/ecg_transformer/simclr_rlm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/simclr/config/pretraining/ecg_transformer/simclr_rlm.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/README.md -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/finetuning/ecg_transformer/diagnosis.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/finetuning/ecg_transformer/diagnosis.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/finetuning/ecg_transformer/grounding_classification/base_total.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/finetuning/ecg_transformer/grounding_classification/base_total.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/finetuning/ecg_transformer/identification.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/finetuning/ecg_transformer/identification.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/pretraining/w2v_cmsc.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/pretraining/w2v_cmsc.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/pretraining/w2v_cmsc_augs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/pretraining/w2v_cmsc_augs.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/pretraining/w2v_cmsc_rlm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/pretraining/w2v_cmsc_rlm.yaml -------------------------------------------------------------------------------- /examples/w2v_cmsc/config/pretraining/w2v_cmsc_rlm_small.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/w2v_cmsc/config/pretraining/w2v_cmsc_rlm_small.yaml -------------------------------------------------------------------------------- /examples/wav2vec2/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/wav2vec2/README.md -------------------------------------------------------------------------------- /examples/wav2vec2/config/finetuning/diagnosis.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/wav2vec2/config/finetuning/diagnosis.yaml -------------------------------------------------------------------------------- /examples/wav2vec2/config/finetuning/identification.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/wav2vec2/config/finetuning/identification.yaml -------------------------------------------------------------------------------- /examples/wav2vec2/config/pretraining/w2v.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/wav2vec2/config/pretraining/w2v.yaml -------------------------------------------------------------------------------- /examples/wav2vec2/config/pretraining/w2v_augs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/wav2vec2/config/pretraining/w2v_augs.yaml -------------------------------------------------------------------------------- /examples/wav2vec2/config/pretraining/w2v_rlm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/examples/wav2vec2/config/pretraining/w2v_rlm.yaml -------------------------------------------------------------------------------- /fairseq_cli/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fairseq_cli/hydra_inference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_cli/hydra_inference.py -------------------------------------------------------------------------------- /fairseq_cli/hydra_train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_cli/hydra_train.py -------------------------------------------------------------------------------- /fairseq_cli/hydra_validate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_cli/hydra_validate.py -------------------------------------------------------------------------------- /fairseq_cli/inference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_cli/inference.py -------------------------------------------------------------------------------- /fairseq_cli/train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_cli/train.py -------------------------------------------------------------------------------- /fairseq_cli/validate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_cli/validate.py -------------------------------------------------------------------------------- /fairseq_signals/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/clib/cuda/ngram_repeat_block_cuda.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/cuda/ngram_repeat_block_cuda.cpp -------------------------------------------------------------------------------- /fairseq_signals/clib/cuda/ngram_repeat_block_cuda_kernel.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/cuda/ngram_repeat_block_cuda_kernel.cu -------------------------------------------------------------------------------- /fairseq_signals/clib/libbase/balanced_assignment.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/libbase/balanced_assignment.cpp -------------------------------------------------------------------------------- /fairseq_signals/clib/libnat/edit_dist.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/libnat/edit_dist.cpp -------------------------------------------------------------------------------- /fairseq_signals/clib/libnat_cuda/binding.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/libnat_cuda/binding.cpp -------------------------------------------------------------------------------- /fairseq_signals/clib/libnat_cuda/edit_dist.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/libnat_cuda/edit_dist.cu -------------------------------------------------------------------------------- /fairseq_signals/clib/libnat_cuda/edit_dist.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/clib/libnat_cuda/edit_dist.h -------------------------------------------------------------------------------- /fairseq_signals/config/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fairseq_signals/config/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/config/config.yaml -------------------------------------------------------------------------------- /fairseq_signals/criterions/3kg_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/3kg_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/arcface_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/arcface_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/binary_cross_entropy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/binary_cross_entropy.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/binary_cross_entropy_with_logits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/binary_cross_entropy_with_logits.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/cmsc_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/cmsc_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/composite_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/composite_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/cross_entropy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/cross_entropy.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/m3ae_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/m3ae_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/medvill_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/medvill_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/mse_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/mse_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/multi_head_binary_cross_entropy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/multi_head_binary_cross_entropy.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/simclr_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/simclr_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/criterions/wav2vec2_criterion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/criterions/wav2vec2_criterion.py -------------------------------------------------------------------------------- /fairseq_signals/data/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/data/data_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/data_utils.py -------------------------------------------------------------------------------- /fairseq_signals/data/data_utils_fast.pyx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/data_utils_fast.pyx -------------------------------------------------------------------------------- /fairseq_signals/data/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/augmentations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/augmentations.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/cmsc_ecg_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/cmsc_ecg_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/ecg_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/ecg_utils.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/identification_ecg_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/identification_ecg_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/perturb_ecg_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/perturb_ecg_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/README.md -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/combine_manifests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/combine_manifests.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/convert_to_cmsc_manifest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/convert_to_cmsc_manifest.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/manifest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/manifest.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/manifest_identification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/manifest_identification.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/manifest_physionet2021.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/manifest_physionet2021.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/preprocess_ecgiddb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/preprocess_ecgiddb.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/preprocess_ludb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/preprocess_ludb.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/preprocess_physionet2021.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/preprocess_physionet2021.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/preprocess/preprocess_ptbxl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/preprocess/preprocess_ptbxl.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/raw_ecg_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/raw_ecg_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg/segmentation_ecg_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg/segmentation_ecg_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/ecg_qa_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/ecg_qa_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/ecg_text_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/ecg_text_dataset.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/README.md -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/manifest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/manifest.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/preprocess_ecgqa.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/preprocess_ecgqa.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/preprocess_ecgqa_for_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/preprocess_ecgqa_for_classification.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/preprocess_mimic_iv_ecg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/preprocess_mimic_iv_ecg.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/preprocess_ptbxl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/preprocess_ptbxl.py -------------------------------------------------------------------------------- /fairseq_signals/data/ecg_text/preprocess/ptbxl_database_translated.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/ecg_text/preprocess/ptbxl_database_translated.csv -------------------------------------------------------------------------------- /fairseq_signals/data/iterators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/data/iterators.py -------------------------------------------------------------------------------- /fairseq_signals/dataclass/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/dataclass/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/dataclass/configs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/dataclass/configs.py -------------------------------------------------------------------------------- /fairseq_signals/dataclass/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/dataclass/constants.py -------------------------------------------------------------------------------- /fairseq_signals/dataclass/initialize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/dataclass/initialize.py -------------------------------------------------------------------------------- /fairseq_signals/dataclass/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/dataclass/utils.py -------------------------------------------------------------------------------- /fairseq_signals/distributed/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/distributed/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/distributed/distributed_timeout_wrapper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/distributed/distributed_timeout_wrapper.py -------------------------------------------------------------------------------- /fairseq_signals/distributed/fully_sharded_data_parallel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/distributed/fully_sharded_data_parallel.py -------------------------------------------------------------------------------- /fairseq_signals/distributed/legacy_distributed_data_parallel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/distributed/legacy_distributed_data_parallel.py -------------------------------------------------------------------------------- /fairseq_signals/distributed/module_proxy_wrapper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/distributed/module_proxy_wrapper.py -------------------------------------------------------------------------------- /fairseq_signals/distributed/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/distributed/utils.py -------------------------------------------------------------------------------- /fairseq_signals/logging/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/logging/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/logging/meters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/logging/meters.py -------------------------------------------------------------------------------- /fairseq_signals/logging/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/logging/metrics.py -------------------------------------------------------------------------------- /fairseq_signals/logging/progress_bar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/logging/progress_bar.py -------------------------------------------------------------------------------- /fairseq_signals/models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/models/classification/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/classification/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/models/classification/ecg_transformer_classifier.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/classification/ecg_transformer_classifier.py -------------------------------------------------------------------------------- /fairseq_signals/models/classification/resnet_classifier.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/classification/resnet_classifier.py -------------------------------------------------------------------------------- /fairseq_signals/models/convnet/__init__.py: -------------------------------------------------------------------------------- 1 | from .convnet import * # noqa -------------------------------------------------------------------------------- /fairseq_signals/models/convnet/convnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/convnet/convnet.py -------------------------------------------------------------------------------- /fairseq_signals/models/distributed_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/distributed_model.py -------------------------------------------------------------------------------- /fairseq_signals/models/ecg_language_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/ecg_language_transformer.py -------------------------------------------------------------------------------- /fairseq_signals/models/ecg_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/ecg_transformer.py -------------------------------------------------------------------------------- /fairseq_signals/models/finetuning_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/finetuning_model.py -------------------------------------------------------------------------------- /fairseq_signals/models/identification/__init__.py: -------------------------------------------------------------------------------- 1 | from .arcface import * # noqa -------------------------------------------------------------------------------- /fairseq_signals/models/identification/arcface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/identification/arcface.py -------------------------------------------------------------------------------- /fairseq_signals/models/lstm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/lstm.py -------------------------------------------------------------------------------- /fairseq_signals/models/m3ae/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/m3ae/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/models/m3ae/bert_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/m3ae/bert_model.py -------------------------------------------------------------------------------- /fairseq_signals/models/m3ae/m3ae.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/m3ae/m3ae.py -------------------------------------------------------------------------------- /fairseq_signals/models/m3ae/m3ae_qa.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/m3ae/m3ae_qa.py -------------------------------------------------------------------------------- /fairseq_signals/models/medvill/__init__.py: -------------------------------------------------------------------------------- 1 | from .medvill import * -------------------------------------------------------------------------------- /fairseq_signals/models/medvill/medvill.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/medvill/medvill.py -------------------------------------------------------------------------------- /fairseq_signals/models/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/model.py -------------------------------------------------------------------------------- /fairseq_signals/models/pretraining_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/pretraining_model.py -------------------------------------------------------------------------------- /fairseq_signals/models/question_answer/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/question_answer/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/models/question_answer/blind_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/question_answer/blind_transformer.py -------------------------------------------------------------------------------- /fairseq_signals/models/question_answer/deaf_transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/question_answer/deaf_transformer.py -------------------------------------------------------------------------------- /fairseq_signals/models/question_answer/ecg_language_transformer_classifier.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/question_answer/ecg_language_transformer_classifier.py -------------------------------------------------------------------------------- /fairseq_signals/models/question_answer/resnet_lstm_classifier.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/question_answer/resnet_lstm_classifier.py -------------------------------------------------------------------------------- /fairseq_signals/models/resnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/resnet.py -------------------------------------------------------------------------------- /fairseq_signals/models/resnet_lstm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/resnet_lstm.py -------------------------------------------------------------------------------- /fairseq_signals/models/se_wrn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/se_wrn.py -------------------------------------------------------------------------------- /fairseq_signals/models/segmentation/__init__.py: -------------------------------------------------------------------------------- 1 | from .unet_segmentor import * #noqa -------------------------------------------------------------------------------- /fairseq_signals/models/segmentation/unet_segmentor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/segmentation/unet_segmentor.py -------------------------------------------------------------------------------- /fairseq_signals/models/transformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/transformer.py -------------------------------------------------------------------------------- /fairseq_signals/models/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/unet.py -------------------------------------------------------------------------------- /fairseq_signals/models/vggnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/vggnet.py -------------------------------------------------------------------------------- /fairseq_signals/models/wav2vec2/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/wav2vec2/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/models/wav2vec2/wav2vec2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/wav2vec2/wav2vec2.py -------------------------------------------------------------------------------- /fairseq_signals/models/wav2vec2/wav2vec2_cmsc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/models/wav2vec2/wav2vec2_cmsc.py -------------------------------------------------------------------------------- /fairseq_signals/modules/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/modules/conv_feature_extraction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/conv_feature_extraction.py -------------------------------------------------------------------------------- /fairseq_signals/modules/conv_positional_encoding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/conv_positional_encoding.py -------------------------------------------------------------------------------- /fairseq_signals/modules/dropout.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/dropout.py -------------------------------------------------------------------------------- /fairseq_signals/modules/fp32_group_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/fp32_group_norm.py -------------------------------------------------------------------------------- /fairseq_signals/modules/gather_layer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/gather_layer.py -------------------------------------------------------------------------------- /fairseq_signals/modules/grad_multiply.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/grad_multiply.py -------------------------------------------------------------------------------- /fairseq_signals/modules/gumbel_vector_quantizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/gumbel_vector_quantizer.py -------------------------------------------------------------------------------- /fairseq_signals/modules/layer_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/layer_norm.py -------------------------------------------------------------------------------- /fairseq_signals/modules/multi_head_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/multi_head_attention.py -------------------------------------------------------------------------------- /fairseq_signals/modules/quant_noise.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/quant_noise.py -------------------------------------------------------------------------------- /fairseq_signals/modules/same_pad.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/same_pad.py -------------------------------------------------------------------------------- /fairseq_signals/modules/transformer_encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/transformer_encoder.py -------------------------------------------------------------------------------- /fairseq_signals/modules/transformer_encoder_layer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/transformer_encoder_layer.py -------------------------------------------------------------------------------- /fairseq_signals/modules/transpose_last.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/modules/transpose_last.py -------------------------------------------------------------------------------- /fairseq_signals/optim/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/optim/adam.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/adam.py -------------------------------------------------------------------------------- /fairseq_signals/optim/dynamic_loss_scalar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/dynamic_loss_scalar.py -------------------------------------------------------------------------------- /fairseq_signals/optim/fp16_optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/fp16_optimizer.py -------------------------------------------------------------------------------- /fairseq_signals/optim/lr_scheduler/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/lr_scheduler/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/optim/lr_scheduler/fairseq_lr_scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/lr_scheduler/fairseq_lr_scheduler.py -------------------------------------------------------------------------------- /fairseq_signals/optim/lr_scheduler/fixed_schedule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/lr_scheduler/fixed_schedule.py -------------------------------------------------------------------------------- /fairseq_signals/optim/lr_scheduler/step_lr_scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/lr_scheduler/step_lr_scheduler.py -------------------------------------------------------------------------------- /fairseq_signals/optim/lr_scheduler/tri_stage_lr_scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/lr_scheduler/tri_stage_lr_scheduler.py -------------------------------------------------------------------------------- /fairseq_signals/optim/optimizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/optim/optimizer.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/ecg_classification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/ecg_classification.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/ecg_identification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/ecg_identification.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/ecg_pretraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/ecg_pretraining.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/ecg_question_answering.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/ecg_question_answering.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/ecg_segmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/ecg_segmentation.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/ecg_text_pretaining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/ecg_text_pretaining.py -------------------------------------------------------------------------------- /fairseq_signals/tasks/task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/tasks/task.py -------------------------------------------------------------------------------- /fairseq_signals/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/trainer.py -------------------------------------------------------------------------------- /fairseq_signals/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/__init__.py -------------------------------------------------------------------------------- /fairseq_signals/utils/checkpoint_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/checkpoint_utils.py -------------------------------------------------------------------------------- /fairseq_signals/utils/file.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/file.py -------------------------------------------------------------------------------- /fairseq_signals/utils/file_io.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/file_io.py -------------------------------------------------------------------------------- /fairseq_signals/utils/nan_detector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/nan_detector.py -------------------------------------------------------------------------------- /fairseq_signals/utils/options.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/options.py -------------------------------------------------------------------------------- /fairseq_signals/utils/pandas.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/pandas.py -------------------------------------------------------------------------------- /fairseq_signals/utils/pdb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/pdb.py -------------------------------------------------------------------------------- /fairseq_signals/utils/registry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/registry.py -------------------------------------------------------------------------------- /fairseq_signals/utils/splits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/splits.py -------------------------------------------------------------------------------- /fairseq_signals/utils/store.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/store.py -------------------------------------------------------------------------------- /fairseq_signals/utils/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/fairseq_signals/utils/utils.py -------------------------------------------------------------------------------- /fairseq_signals/version.txt: -------------------------------------------------------------------------------- 1 | 1.0.0a0 -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/pyproject.toml -------------------------------------------------------------------------------- /scripts/preprocess/ecg/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/README.md -------------------------------------------------------------------------------- /scripts/preprocess/ecg/code_15_labels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/code_15_labels.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/code_15_signals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/code_15_signals.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/example_records.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/example_records.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/example_signals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/example_signals.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/mimic_iv_ecg_records.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/mimic_iv_ecg_records.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/mimic_iv_ecg_signals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/mimic_iv_ecg_signals.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/muse_records.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/muse_records.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/muse_signals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/muse_signals.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/physionet2021_labels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/physionet2021_labels.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/physionet2021_records.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/physionet2021_records.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/physionet2021_signals.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/physionet2021_signals.py -------------------------------------------------------------------------------- /scripts/preprocess/ecg/preprocess.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/ecg/preprocess.py -------------------------------------------------------------------------------- /scripts/preprocess/manifests.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/manifests.py -------------------------------------------------------------------------------- /scripts/preprocess/prepare_clf_labels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/prepare_clf_labels.py -------------------------------------------------------------------------------- /scripts/preprocess/splits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/splits.py -------------------------------------------------------------------------------- /scripts/preprocess/subset_manifest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/scripts/preprocess/subset_manifest.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Jwoo5/fairseq-signals/HEAD/setup.py --------------------------------------------------------------------------------