├── .DS_Store ├── LICENSE ├── README.md ├── cptac ├── .DS_Store ├── CPTAC_CLINI_Data.xlsx ├── CPTAC_CNA_part1.txt ├── CPTAC_CNA_part2.txt ├── CPTAC_Mutations_part1.txt ├── CPTAC_Mutations_part2.txt ├── CPTAC_RNA expression z-scores_part1.txt ├── CPTAC_RNA expression z-scores_part2.txt ├── CPTAC_sample_matrix_part1.txt └── CPTAC_sample_matrix_part2.txt ├── old ├── .DS_Store └── combined_study_clinical_data.xlsx └── tcga ├── .DS_Store ├── immune.xlsx ├── liu.xlsx ├── outcome.xlsx ├── tcga-cna-part1.txt ├── tcga-cna-part10.txt ├── tcga-cna-part11.txt ├── tcga-cna-part12.txt ├── tcga-cna-part13.txt ├── tcga-cna-part14.txt ├── tcga-cna-part2.txt ├── tcga-cna-part3.txt ├── tcga-cna-part4.txt ├── tcga-cna-part5.txt ├── tcga-cna-part6.txt ├── tcga-cna-part7.txt ├── tcga-cna-part8.txt ├── tcga-cna-part9.txt ├── tcga-institution-sites.csv ├── tcga-mutations-part1.txt ├── tcga-mutations-part10.txt ├── tcga-mutations-part11.txt ├── tcga-mutations-part12.txt ├── tcga-mutations-part13.txt ├── 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