├── .github └── workflows │ └── test.yml ├── .project ├── .smalltalk.ston ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── appveyor.yml ├── assets ├── data │ ├── network.dat │ ├── network100.dat │ └── network1000.dat └── models-library.zip ├── documentation ├── formal-SoC-models │ ├── Gillespie SEIRS Model (K) │ ├── Gillespie SEIRS Model (Matlab) │ ├── m1.md │ └── m2.md └── meta-model │ ├── MM-implementation.org │ ├── auto │ └── meta-modelv3.el │ ├── legacy │ ├── as-tree-structure-each-sub-tree-is-reusable.pdf │ ├── composite-pattern.pdf │ ├── meta-modelv1.png │ └── meta-modelv2.png │ ├── meta-modelv3.org │ └── meta-modelv3.png ├── images ├── example6.png ├── gith_pr.png ├── github_cp.png ├── github_pr.png ├── github_pr_fork.png ├── iceberg_pharo.png └── screenshot.png └── src ├── .filetree ├── .properties ├── BaselineOfKendrick ├── BaselineOfKendrick.class.st └── package.st ├── Kendrick-Core ├── BlockClosure.extension.st ├── ByteSymbol.extension.st ├── FileReference.extension.st ├── K2TGillespieSimulation.trait.st ├── KEBinaryExpression.class.st ├── KEBisectingSearchProportionalSelection.class.st ├── KEBisectingSearchProportionalSelectionTest.class.st ├── KEChart.class.st ├── KECompartment.class.st ├── KECompartmentName.class.st ├── KEComponent.class.st ├── KEContactNetwork.class.st ├── KEContactNetworkNode.class.st ├── KEContactNetworkSimulator.class.st ├── KEContactNode.class.st ├── KEDependentModelPart.class.st ├── KEDeterministicSimulator.class.st ├── KEDiagramBuilder.class.st ├── KEERRandomNetworkTopology.class.st ├── KEEntity.class.st ├── KEEquation.class.st ├── KEErdosGNMContactNetwork.class.st ├── KEErdosGNMContactNetworkTest.class.st ├── KEErdosGNPContactNetwork.class.st ├── KEErdosGNPContactNetworkTest.class.st ├── KEEvent.class.st ├── KEExpression.class.st ├── KEGillespieSimulator.class.st ├── KEGraph.class.st ├── KEGraphBuilder.class.st ├── KEGraphFromCompartments.class.st ├── KEHexagonalContactNetwork.class.st ├── KEHexagonalContactNetworkTest.class.st ├── KEIndexedVariable.class.st ├── KEKleinbergContactNetwork.class.st ├── KEKleinbergContactNetworkTest.class.st ├── KELinearWalkProportionalSelection.class.st ├── KELinearWalkProportionalSelectionTest.class.st ├── KEMap.class.st ├── KEMapBuilder.class.st ├── KEMathFunctionExpression.class.st ├── KEModel.class.st ├── KEModelPart.class.st ├── KENetworkBuilder.class.st ├── KENetworkTopology.class.st ├── KENode.class.st ├── KENumerical.class.st ├── KEODESystem.class.st ├── KEParameter.class.st ├── KEPopulation.class.st ├── KEProportionalSelection.class.st ├── KERandomNetworkTopology.class.st ├── KEScaleFreeNetworkTopology.class.st ├── KESigmaFunctionExpression.class.st ├── KESimpleExpression.class.st ├── KESimulator.class.st ├── KESmallWorldNetworkTopology.class.st ├── KEStochasticAcceptanceProportionalSelection.class.st ├── KEStochasticAcceptanceProportionalSelectionTest.class.st ├── KEStochasticSimulator.class.st ├── KETauLeapSimulator.class.st ├── KETraitNetworkMetrics.trait.st ├── KETransition.class.st ├── KETriangularContactNetwork.class.st ├── KETriangularContactNetworkTest.class.st ├── KEUnaryExpression.class.st ├── KEVariable.class.st ├── Object.extension.st ├── SHRBTextStyler.extension.st ├── String.extension.st └── package.st ├── Kendrick-DSL ├── BenchExamples.class.st ├── Composition.class.st ├── KModel.class.st ├── KendrickCMDHandler.class.st ├── KendrickComposite.class.st ├── KendrickDSLSyntaxError.class.st ├── KendrickEquations.class.st ├── KendrickInternalDSLEntities.class.st ├── KendrickModelingComponent.class.st ├── KendrickTransitions.class.st ├── Map.class.st ├── ModelComponent.class.st ├── PPODEGrammar.class.st ├── PPODEParser.class.st ├── Scenario.class.st ├── Simulation.class.st ├── TestDependantConcern.class.st ├── TestEntitiesOnDisk.class.st ├── TestMeaslesScripts.class.st ├── TestMeaslesScriptsBMC.class.st ├── TestMeaslesScriptsODEsBMC.class.st ├── TestMosquitoScripts.class.st ├── TestMultiSpeciesSpatial.class.st ├── TestMultiSpeciesSpatialDependant.class.st ├── TestMultiSpeciesSpatialODEs.class.st ├── TestOneSpeciesSpatialScripts.class.st ├── TestsDSLSyntaxCreateComposition.class.st ├── TestsDSLSyntaxCreateModel.class.st ├── TestsDSLSyntaxScenario.class.st ├── TestsIST.class.st ├── TestsModel1.class.st ├── TestsModel2.class.st ├── TestsModel3.class.st ├── TestsModel4.class.st ├── TestsModel5.class.st ├── TestsModel6SpatialMap.class.st ├── TestsModel6SpatialMapWithEntity.class.st ├── Visualization.class.st └── package.st ├── Kendrick-Examples ├── KEDeterministicExamples.class.st ├── KEExamples.class.st ├── KEIcon.class.st ├── KERoassalExamples.class.st ├── KEStochasticExamples.class.st └── package.st ├── Kendrick-Tests ├── DSLExamples.class.st ├── KECompartmentNameTest.class.st ├── KECompartmentTest.class.st ├── KEContactNetworkTest.class.st ├── KEContactNodeTest.class.st ├── KEDependentModelPartTest.class.st ├── KEERRandomNetworkTopologyTest.class.st ├── KEEquationTest.class.st ├── KEEventTest.class.st ├── KEExpressionTest.class.st ├── KEGraphTest.class.st ├── KEMapBuilderTest.class.st ├── KEModelPartTest.class.st ├── KEModelTest.class.st ├── KENodeTest.class.st ├── KEODESystemTest.class.st ├── KEPopulationTest.class.st ├── KEScaleFreeNetworkTopologyTest.class.st ├── KESimulatorTest.class.st ├── KESmallWorldNetworkTopologyTest.class.st ├── KETestSTON.class.st ├── KETransitionTest.class.st ├── KEVariableTest.class.st ├── PPODEGrammarTest.class.st ├── PPODEParserTest.class.st ├── TestODE.class.st └── package.st └── Kendrick2-Automata ├── K2Automaton.class.st ├── K2CTMC.class.st ├── K2CTMCState.class.st ├── K2CTMCTest.class.st ├── K2CTMCTransition.class.st ├── K2DTMC.class.st ├── K2DTMCTest.class.st ├── K2FSMAutomaton.class.st ├── K2FSMAutomatonTest.class.st ├── K2FSMFinalState.class.st ├── K2FSMInitialState.class.st ├── K2FSMState2.class.st ├── K2FSMStateTest.class.st ├── K2FSMTransition.class.st ├── K2FSMTransitionTest.class.st ├── 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