├── .gitignore ├── .idea └── codeStyleSettings.xml ├── LICENSE ├── Nat_Protocols_Version ├── ConsensusMaker.py ├── CountMuts.py ├── DCS_family_size_plotter.py ├── Duplex-Process-Numbers.txt ├── DuplexMaker.py ├── PE_BASH_MAKER.py ├── PostDCSProcessing.sh ├── ProgramOptions.html ├── README.md ├── bash_template.sh ├── clean.py ├── flag_translations.txt ├── mut-position.py ├── muts_by_read_position.py └── tag_to_header.py ├── README.md ├── TestData ├── 1512_ParkKO.dcs.d50-c0-0.02.unique.countmuts ├── PeakFamilySize.png ├── SRAFixer.py └── Test_data_README └── UnifiedConsensusMaker.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Kennedy-Lab-UW/Duplex-Sequencing/HEAD/.gitignore -------------------------------------------------------------------------------- /.idea/codeStyleSettings.xml: -------------------------------------------------------------------------------- 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