├── .gitignore ├── LICENSE.md ├── PhaTYP.py ├── README.md ├── config ├── .ipynb_checkpoints │ └── Untitled-checkpoint.ipynb ├── config.json ├── tokenizer_config.json └── vocab.txt ├── database ├── README.md ├── database.fa.gz ├── pc2wordsid.dict └── proteins.csv ├── logo.png ├── phatyp.yaml ├── preprocessing.py ├── setup.py ├── test_contigs.fa └── train ├── README.md ├── example ├── finetune_example.csv └── pretrain_example.txt ├── finetune.py ├── pretrain.py └── script.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KennthShang/PhaTYP/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KennthShang/PhaTYP/HEAD/LICENSE.md -------------------------------------------------------------------------------- /PhaTYP.py: 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