├── .gitignore ├── FPS code ├── FPS.py └── FPS_helper.py ├── LICENSE ├── PathDino.py ├── PathDino_main_512.py ├── PathDino_train_512.sh ├── README.md ├── datafolders.py ├── example_get_embeddings.py ├── example_visualizeAttention_gif.py ├── files ├── ActivationMap.png ├── FigPathDino_parameters_FLOPs_compare.png ├── HistRotate.png ├── PathDinoRadar.png ├── activations_gifSmall.gif ├── demoVideo.mp4 └── resultsPatchLevel.png ├── hubconf.py ├── inference └── img.png ├── preprocessing ├── gdc_manifest_svs_Diagnostic_slide_Open_11765.txt └── patching_TCGA_WSIs_using_manifest_list.py ├── run_with_submitit.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KimiaLabMayo/PathDino/HEAD/.gitignore -------------------------------------------------------------------------------- /FPS code/FPS.py: -------------------------------------------------------------------------------- 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