├── .gitignore ├── 0_Index.ipynb ├── 1_Introduction_to_the_Insight_Toolkit.ipynb ├── 2_Image_Filtering.ipynb ├── 3_Segmentation.ipynb ├── 4_ITK_in_Python.ipynb ├── 5_Registration.ipynb ├── 6_Extending_the_Toolkit-Part1.ipynb ├── 6_Extending_the_Toolkit-Part2.ipynb ├── Dockerfile.jupyterhub ├── Dockerfile.local ├── LICENSE ├── README.rst ├── binder └── Dockerfile ├── check_env.ipynb ├── data ├── 005_32months_T2_RegT1_Reg2Atlas_ManualBrainMask_Stripped.nrrd ├── 6_Extend_0_Github-SplitComponents.png ├── 6_Extend_1_GitHub-SplitComponents-README.png ├── 6_Extend_2_Github-SplitComponents-Edit_and_create_branch.png ├── 6_Extend_3_Github-SplitComponents-CreatePR.png ├── 6_Extend_4.5_Github-TwoProjectionRegistration-PR-checks.png ├── 6_Extend_4_Github-SplitComponents-PR-created.png ├── 6_Extend_5_AzurePipeline-SplitComponents-Builds.png ├── 6_Extend_6_AzurePipeline-SplitComponents-Release.png ├── 6_Extend_7.5_AzurePipeline-TwoProjectionRegistration-ApproveDeploy.png ├── 6_Extend_7_AzurePipeline-SplitComponents-ReleasePipeline.png ├── 6_Extend_8_Pypi-split-components.png ├── BrainProtonDensitySlice.png ├── BrainProtonDensitySliceBorder20.png ├── BrainProtonDensitySliceShifted13x17y.png ├── CBCT-TextureInput.png ├── CBCT-TextureRunLengthNonUniformity.png ├── CondyleTextureMap.jpeg ├── DzZ_T1.nrrd ├── DzZ_T2.nrrd ├── Filtering.png ├── ForwardAndBackwardTransform.svg ├── KitwareITK.jpg ├── KitwareOverview.jpg ├── Mesh.png ├── PacMan.png ├── PhysicalSpace.png ├── Registration.png ├── Scan_CBCT_13R.nrrd ├── SegmC_CBCT_13R.nrrd ├── Segmentation1.png ├── Segmentation2.png ├── Segmentation3.png ├── Segmentation4.png ├── Segmentation5.png ├── SegmentationLevelSet.png ├── TransformDirection.png ├── Transformation.png ├── Ultrasound-B-mode.png ├── VisibleHumanHeadRender.png ├── VisibleHumanLogo.png ├── VisibleHumanSlice.png ├── WaveletReconstruction.png ├── WhiteMatter.png ├── biomechanics.jpg ├── brainweb165a10f17.mha ├── carotid-plaque.gif ├── confidence-connected.png ├── connected-threshold.png ├── data-pipeline.png ├── dzCBCT.nrrd ├── dzCBCT.png ├── dzCT211.nrrd ├── dzCT211c.nrrd ├── dzIntensities.png ├── dzIntensitiesCBCT-MRI.png ├── dzMR211.nrrd ├── dzTMJ.nrrd ├── dzTMJ.png ├── fast-marching-speed-image.png ├── fast-marching-time-crossing.png ├── github-logo.png ├── isolated-connected.png ├── itk-code-reviews.png ├── itk-contributors.png ├── itk-logo.png ├── jupyter-custom.css ├── kitware-logo-small.png ├── kitware-logo.png ├── level-set-concept.png ├── level-set-evolution.png ├── pipeline-updates.png ├── qdna1.mha ├── segmentation-categories.png ├── shape-detection-level-set.png ├── shape-detection-pipeline.png ├── sklearn │ ├── im0.nrrd │ ├── im0_label.nrrd │ ├── im1.nrrd │ ├── im1_label.nrrd │ ├── im2.nrrd │ ├── im2_label.nrrd │ ├── im3.nrrd │ ├── im3_label.nrrd │ ├── im4.nrrd │ ├── im4_label.nrrd │ ├── im5.nrrd │ ├── im5_label.nrrd │ ├── im6.nrrd │ ├── im6_label.nrrd │ ├── im7.nrrd │ ├── im7_label.nrrd │ ├── im8.nrrd │ ├── im8_label.nrrd │ ├── im9.nrrd │ └── im9_label.nrrd ├── streaming.gif ├── streaming.png └── transforms-and-pixels.png ├── run.sh └── solutions ├── 2_Image_Filtering_Exercise1.py ├── 2_Image_Filtering_Exercise2.py ├── 2_Image_Filtering_Exercise3.py ├── 2_Image_Filtering_Exercise4.py ├── 3_Segmentation_Exercise1.py ├── 3_Segmentation_Exercise2.py ├── 3_Segmentation_Exercise3.py ├── 4_ITK_and_NumPy_answers_Exercise1.py ├── 4_ITK_and_NumPy_answers_Exercise2.py ├── 4_Using_ITK_in_Python_real_world_filters_MeanFilter-TypeDeduction.py ├── 4_Using_ITK_in_Python_real_world_filters_MeanFilter.py ├── 4_Using_ITK_in_Python_real_world_filters_MedianFilter.py ├── 4_Using_ITK_in_Python_real_world_filters_OtsuFilter-TypeDeduction.py ├── 4_Using_ITK_in_Python_real_world_filters_OtsuFilter.py ├── 4_Using_ITK_in_Python_real_world_filters_mean.py ├── 4_Using_ITK_in_Python_real_world_filters_median.py ├── 4_Using_ITK_in_Python_real_world_filters_otsu.py ├── 5_Registration_Exercise2Answer1.py ├── 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