├── DAseq.Rproj ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── DAseq.R ├── STGmarkerFinder.R ├── SeuratMarkerFinder.R ├── data.R ├── getDAcells.R ├── getDAregion.R └── plots.R ├── README.md ├── _pkgdown.yml ├── data ├── X.2d.melanoma.rda ├── X.label.info.rda ├── X.label.melanoma.rda └── X.melanoma.rda ├── docs ├── 404.html ├── LICENSE-text.html ├── articles │ ├── index.html │ ├── tutorial.html │ └── tutorial_files │ │ └── figure-html │ │ ├── unnamed-chunk-10-1.png │ │ ├── unnamed-chunk-12-1.png │ │ ├── unnamed-chunk-13-1.png │ │ ├── unnamed-chunk-16-1.png │ │ ├── unnamed-chunk-17-1.png │ │ ├── unnamed-chunk-7-1.png │ │ ├── unnamed-chunk-8-1.png │ │ └── unnamed-chunk-9-1.png ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── DAseq.html │ ├── STGlocalMarkers.html │ ├── STGmarkerFinder.html │ ├── SeuratLocalMarkers.html │ ├── SeuratMarkerFinder.html │ ├── X.2d.melanoma.html │ ├── X.label.info.html │ ├── X.label.melanoma.html │ ├── X.melanoma.html │ ├── addDAslot.html │ ├── getDAcells.html │ ├── getDAregion.html │ ├── getDAregion.old.html │ ├── index.html │ ├── plotCellLabel.html │ ├── plotCellScore.html │ ├── plotDAsite.html │ ├── runSTG.html │ └── updateDAcells.html ├── inst └── DA_STG.py └── man ├── DAseq.Rd ├── STGlocalMarkers.Rd ├── STGmarkerFinder.Rd ├── SeuratLocalMarkers.Rd ├── SeuratMarkerFinder.Rd ├── X.2d.melanoma.Rd ├── X.label.info.Rd ├── X.label.melanoma.Rd ├── X.melanoma.Rd ├── addDAslot.Rd ├── getDAcells.Rd ├── getDAregion.Rd ├── plotCellLabel.Rd ├── plotCellScore.Rd ├── plotDAsite.Rd ├── runSTG.Rd └── updateDAcells.Rd /DAseq.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KlugerLab/DAseq/HEAD/DAseq.Rproj -------------------------------------------------------------------------------- /DESCRIPTION: 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