├── .github ├── ISSUE_TEMPLATE │ ├── bug-report.md │ ├── dataset-request.md │ └── feature-request.md └── workflows │ ├── run_tests.yml │ └── run_tox.yml ├── .gitignore ├── Jenkinsfile ├── LICENSE ├── README.md ├── docs ├── .nojekyll ├── _sources │ ├── getting_started.rst.txt │ ├── index.rst.txt │ ├── kg_obo.rst.txt │ ├── modules.rst.txt │ ├── run.rst.txt │ ├── setup.rst.txt │ └── tests.rst.txt ├── _static │ ├── alabaster.css │ ├── basic.css │ ├── css │ │ ├── badge_only.css │ │ └── theme.css │ ├── custom.css │ ├── doctools.js │ ├── documentation_options.js │ ├── file.png │ ├── fonts │ │ ├── Inconsolata-Bold.ttf │ │ ├── Inconsolata-Regular.ttf │ │ ├── Inconsolata.ttf │ │ ├── Lato-Bold.ttf │ │ ├── Lato-Regular.ttf │ │ ├── Lato │ │ │ ├── lato-bold.eot │ │ │ ├── lato-bold.ttf │ │ │ ├── lato-bold.woff │ │ │ ├── lato-bold.woff2 │ │ │ ├── lato-bolditalic.eot │ │ │ ├── lato-bolditalic.ttf │ │ │ ├── lato-bolditalic.woff │ │ │ ├── lato-bolditalic.woff2 │ │ │ ├── lato-italic.eot │ │ │ ├── lato-italic.ttf │ │ │ ├── lato-italic.woff │ │ │ ├── lato-italic.woff2 │ │ │ ├── lato-regular.eot │ │ │ ├── lato-regular.ttf │ │ │ ├── lato-regular.woff │ │ │ └── lato-regular.woff2 │ │ ├── RobotoSlab-Bold.ttf │ │ ├── RobotoSlab-Regular.ttf │ │ ├── RobotoSlab │ │ │ ├── roboto-slab-v7-bold.eot │ │ │ ├── roboto-slab-v7-bold.ttf │ │ │ ├── roboto-slab-v7-bold.woff │ │ │ ├── roboto-slab-v7-bold.woff2 │ │ │ ├── roboto-slab-v7-regular.eot │ │ │ ├── roboto-slab-v7-regular.ttf │ │ │ ├── roboto-slab-v7-regular.woff │ │ │ └── roboto-slab-v7-regular.woff2 │ │ ├── fontawesome-webfont.eot │ │ ├── fontawesome-webfont.svg │ │ ├── fontawesome-webfont.ttf │ │ ├── fontawesome-webfont.woff │ │ └── fontawesome-webfont.woff2 │ ├── jquery-3.4.1.js │ ├── jquery.js │ ├── js │ │ ├── modernizr.min.js │ │ └── theme.js │ ├── language_data.js │ ├── minus.png │ ├── plus.png │ ├── pygments.css │ ├── searchtools.js │ ├── underscore-1.3.1.js │ └── underscore.js ├── genindex.html ├── getting_started.html ├── index.html ├── kg_obo.html ├── modules.html ├── objects.inv ├── py-modindex.html ├── run.html ├── search.html ├── searchindex.js ├── setup.html └── tests.html ├── get_stats.py ├── guides ├── merge-template.yaml ├── merging_obos.md └── project.yaml ├── kg_obo ├── __init__.py ├── __version__.py ├── obolibrary_utils.py ├── prefixes.py ├── robot_utils.py ├── stats.py ├── transform.py └── upload.py ├── logs └── .gitkeep ├── post_setup ├── __init__.py └── post_setup.py ├── run.py ├── setup.py ├── sonar-project.properties ├── sphinx ├── Makefile ├── conf.py ├── getting_started.rst ├── index.rst ├── kg_obo.rst ├── make.bat ├── modules.rst ├── run.rst ├── setup.rst ├── tests.rst └── update_docs.sh ├── tests ├── __init__.py ├── __init__.pyc ├── resources │ ├── download_ontology │ │ ├── aro_SNIPPET.owl │ │ ├── bfo.owl │ │ ├── bfo_NO_VERSION_IRI.owl │ │ ├── bfo_kgx_tsv_edges.tsv │ │ ├── bfo_kgx_tsv_nodes.tsv │ │ ├── cheminf_SNIPPET.owl │ │ ├── emptygraph.tar.gz │ │ ├── go_SNIPPET.owl │ │ ├── graph.tar.gz │ │ 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