├── .gitignore ├── .gitmodules ├── Dockerfile ├── LICENSE ├── Makefile ├── README.md ├── hapdiff.py └── requirements.txt /.gitignore: -------------------------------------------------------------------------------- 1 | *.swp 2 | -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KolmogorovLab/hapdiff/HEAD/.gitmodules -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KolmogorovLab/hapdiff/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KolmogorovLab/hapdiff/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 1 | all: 2 | make -C submodules/minimap2 3 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KolmogorovLab/hapdiff/HEAD/README.md -------------------------------------------------------------------------------- /hapdiff.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KolmogorovLab/hapdiff/HEAD/hapdiff.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | pysam 2 | scipy 3 | edlib 4 | matplotlib 5 | biopython 6 | --------------------------------------------------------------------------------