├── GNU-GPL ├── Makefile ├── README.md ├── data ├── completeness_cutoff.tbl ├── generic.param ├── hmm_profiles │ ├── CVS │ │ ├── Entries │ │ ├── Repository │ │ └── Root │ ├── KOG0002.aln │ ├── KOG0002.hmm │ ├── KOG0003.aln │ ├── KOG0003.hmm │ ├── KOG0018.aln │ ├── KOG0018.hmm │ ├── KOG0019.aln │ ├── KOG0019.hmm │ ├── KOG0025.aln │ ├── KOG0025.hmm │ ├── KOG0047.aln │ ├── KOG0047.hmm │ ├── KOG0062.aln │ ├── KOG0062.hmm │ ├── KOG0073.aln │ ├── KOG0073.hmm │ ├── KOG0077.aln │ ├── KOG0077.hmm │ ├── KOG0084.aln │ ├── KOG0084.hmm │ ├── KOG0092.aln │ ├── KOG0092.hmm │ ├── KOG0094.aln │ ├── KOG0094.hmm │ ├── KOG0100.aln │ ├── KOG0100.hmm │ ├── KOG0102.aln │ ├── KOG0102.hmm │ ├── KOG0103.aln │ ├── KOG0103.hmm │ ├── KOG0122.aln │ ├── KOG0122.hmm │ ├── KOG0142.aln │ ├── KOG0142.hmm │ ├── KOG0173.aln │ ├── KOG0173.hmm │ ├── KOG0174.aln │ ├── KOG0174.hmm │ ├── KOG0175.aln │ ├── KOG0175.hmm │ ├── KOG0176.aln │ ├── KOG0176.hmm │ ├── KOG0177.aln │ ├── KOG0177.hmm │ ├── KOG0179.aln │ ├── KOG0179.hmm │ ├── KOG0180.aln │ ├── KOG0180.hmm │ ├── KOG0181.aln │ ├── KOG0181.hmm │ ├── KOG0182.aln │ ├── KOG0182.hmm │ ├── KOG0183.aln │ ├── KOG0183.hmm │ ├── KOG0184.aln │ ├── KOG0184.hmm │ ├── KOG0185.aln │ ├── KOG0185.hmm │ ├── KOG0188.aln │ ├── KOG0188.hmm │ ├── KOG0190.aln │ ├── KOG0190.hmm │ ├── KOG0209.aln │ ├── KOG0209.hmm │ ├── KOG0211.aln │ ├── KOG0211.hmm │ ├── KOG0225.aln │ ├── KOG0225.hmm │ ├── KOG0233.aln │ ├── KOG0233.hmm │ ├── KOG0258.aln │ ├── KOG0258.hmm │ ├── KOG0261.aln │ ├── KOG0261.hmm │ ├── KOG0264.aln │ ├── KOG0264.hmm │ ├── KOG0271.aln │ ├── KOG0271.hmm │ ├── KOG0276.aln │ ├── KOG0276.hmm │ ├── KOG0279.aln │ ├── KOG0279.hmm │ ├── KOG0285.aln │ ├── KOG0285.hmm │ ├── KOG0289.aln │ ├── KOG0289.hmm │ ├── KOG0291.aln │ ├── KOG0291.hmm │ ├── KOG0292.aln │ ├── KOG0292.hmm │ ├── KOG0302.aln │ ├── KOG0302.hmm │ ├── KOG0313.aln │ ├── KOG0313.hmm │ ├── KOG0318.aln │ ├── KOG0318.hmm │ ├── KOG0327.aln │ ├── KOG0327.hmm │ ├── KOG0328.aln │ ├── KOG0328.hmm │ ├── KOG0329.aln │ ├── KOG0329.hmm │ ├── KOG0330.aln │ ├── KOG0330.hmm │ ├── KOG0331.aln │ ├── KOG0331.hmm │ ├── KOG0344.aln │ ├── KOG0344.hmm │ ├── KOG0346.aln │ ├── KOG0346.hmm │ ├── KOG0357.aln │ ├── KOG0357.hmm │ ├── KOG0358.aln │ ├── KOG0358.hmm │ ├── KOG0359.aln │ ├── KOG0359.hmm │ ├── KOG0361.aln │ ├── KOG0361.hmm │ ├── KOG0362.aln │ ├── KOG0362.hmm │ ├── KOG0363.aln │ ├── KOG0363.hmm │ ├── KOG0364.aln │ ├── KOG0364.hmm │ ├── KOG0365.aln │ ├── KOG0365.hmm │ ├── KOG0366.aln │ ├── KOG0366.hmm │ ├── KOG0367.aln │ ├── KOG0367.hmm │ ├── KOG0371.aln │ ├── KOG0371.hmm │ ├── KOG0372.aln │ ├── KOG0372.hmm │ ├── KOG0373.aln │ ├── KOG0373.hmm │ ├── KOG0376.aln │ ├── KOG0376.hmm │ ├── KOG0394.aln │ ├── KOG0394.hmm │ ├── KOG0397.aln │ ├── KOG0397.hmm │ ├── KOG0400.aln │ ├── KOG0400.hmm │ ├── KOG0402.aln │ ├── KOG0402.hmm │ ├── KOG0407.aln │ ├── KOG0407.hmm │ ├── KOG0418.aln │ ├── KOG0418.hmm │ ├── KOG0419.aln │ ├── KOG0419.hmm │ ├── KOG0420.aln │ ├── KOG0420.hmm │ ├── KOG0424.aln │ ├── KOG0424.hmm │ ├── KOG0434.aln │ ├── KOG0434.hmm │ ├── KOG0441.aln │ ├── KOG0441.hmm │ ├── KOG0450.aln │ ├── KOG0450.hmm │ ├── KOG0460.aln │ ├── KOG0460.hmm │ ├── KOG0462.aln │ ├── KOG0462.hmm │ ├── KOG0466.aln │ ├── KOG0466.hmm │ ├── KOG0468.aln │ ├── KOG0468.hmm │ ├── KOG0469.aln │ ├── KOG0469.hmm │ ├── KOG0477.aln │ ├── KOG0477.hmm │ ├── KOG0481.aln │ ├── KOG0481.hmm │ ├── KOG0495.aln │ ├── KOG0495.hmm │ ├── KOG0523.aln │ ├── KOG0523.hmm │ ├── KOG0524.aln │ ├── KOG0524.hmm │ ├── KOG0530.aln │ ├── KOG0530.hmm │ ├── KOG0534.aln │ ├── KOG0534.hmm │ ├── KOG0544.aln │ ├── KOG0544.hmm │ ├── KOG0556.aln │ ├── KOG0556.hmm │ ├── KOG0559.aln │ ├── KOG0559.hmm │ ├── KOG0563.aln │ ├── KOG0563.hmm │ ├── KOG0567.aln │ ├── KOG0567.hmm │ ├── KOG0602.aln │ ├── KOG0602.hmm │ ├── KOG0622.aln │ ├── KOG0622.hmm │ ├── KOG0625.aln │ ├── KOG0625.hmm │ ├── KOG0631.aln │ ├── KOG0631.hmm │ ├── KOG0650.aln │ ├── KOG0650.hmm │ ├── KOG0659.aln │ ├── KOG0659.hmm │ ├── KOG0675.aln │ ├── KOG0675.hmm │ ├── KOG0679.aln │ ├── KOG0679.hmm │ ├── KOG0683.aln │ ├── KOG0683.hmm │ ├── KOG0687.aln │ ├── KOG0687.hmm │ ├── KOG0688.aln │ ├── KOG0688.hmm │ ├── KOG0727.aln │ ├── KOG0727.hmm │ ├── KOG0728.aln │ ├── KOG0728.hmm │ ├── KOG0729.aln │ ├── KOG0729.hmm │ ├── KOG0734.aln │ ├── KOG0734.hmm │ ├── KOG0741.aln │ ├── KOG0741.hmm │ ├── KOG0756.aln │ ├── KOG0756.hmm │ ├── KOG0758.aln │ ├── KOG0758.hmm │ ├── KOG0767.aln │ ├── KOG0767.hmm │ ├── KOG0780.aln │ ├── KOG0780.hmm │ ├── KOG0784.aln │ ├── KOG0784.hmm │ ├── KOG0785.aln │ ├── KOG0785.hmm │ ├── KOG0787.aln │ ├── KOG0787.hmm │ ├── KOG0788.aln │ ├── KOG0788.hmm │ ├── KOG0815.aln │ ├── KOG0815.hmm │ ├── KOG0817.aln │ ├── KOG0817.hmm │ ├── KOG0820.aln │ ├── KOG0820.hmm │ ├── KOG0829.aln │ ├── KOG0829.hmm │ ├── KOG0852.aln │ ├── KOG0852.hmm │ ├── KOG0853.aln │ ├── KOG0853.hmm │ ├── KOG0857.aln │ ├── KOG0857.hmm │ ├── KOG0861.aln │ ├── KOG0861.hmm │ ├── KOG0862.aln │ ├── KOG0862.hmm │ ├── KOG0871.aln │ ├── KOG0871.hmm │ ├── KOG0876.aln │ ├── KOG0876.hmm │ ├── KOG0878.aln │ ├── KOG0878.hmm │ ├── KOG0880.aln │ ├── KOG0880.hmm │ ├── KOG0888.aln │ ├── KOG0888.hmm │ ├── KOG0894.aln │ ├── KOG0894.hmm │ ├── KOG0898.aln │ ├── KOG0898.hmm │ ├── KOG0922.aln │ ├── KOG0922.hmm │ ├── KOG0927.aln │ ├── KOG0927.hmm │ ├── KOG0933.aln │ ├── KOG0933.hmm │ ├── KOG0934.aln │ ├── KOG0934.hmm │ ├── KOG0935.aln │ ├── KOG0935.hmm │ ├── KOG0937.aln │ ├── KOG0937.hmm │ ├── KOG0938.aln │ ├── KOG0938.hmm │ ├── KOG0948.aln │ ├── KOG0948.hmm │ ├── KOG0952.aln │ ├── KOG0952.hmm │ ├── KOG0959.aln │ ├── KOG0959.hmm │ ├── KOG0960.aln │ ├── KOG0960.hmm │ ├── KOG0964.aln │ ├── KOG0964.hmm │ ├── KOG0969.aln │ ├── KOG0969.hmm │ ├── KOG0985.aln │ ├── KOG0985.hmm │ ├── KOG0989.aln │ ├── KOG0989.hmm │ ├── KOG0991.aln │ ├── KOG0991.hmm │ ├── KOG0996.aln │ ├── KOG0996.hmm │ ├── KOG1036.aln │ ├── KOG1036.hmm │ ├── KOG1047.aln │ ├── KOG1047.hmm │ ├── KOG1058.aln │ ├── KOG1058.hmm │ ├── KOG1062.aln │ ├── KOG1062.hmm │ ├── KOG1068.aln │ ├── KOG1068.hmm │ ├── KOG1077.aln │ ├── KOG1077.hmm │ ├── KOG1078.aln │ ├── KOG1078.hmm │ ├── KOG1088.aln │ ├── KOG1088.hmm │ ├── KOG1098.aln │ ├── KOG1098.hmm │ ├── KOG1099.aln │ ├── KOG1099.hmm │ ├── KOG1112.aln │ ├── KOG1112.hmm │ ├── KOG1123.aln │ ├── KOG1123.hmm │ ├── KOG1131.aln │ ├── KOG1131.hmm │ ├── KOG1137.aln │ ├── KOG1137.hmm │ ├── KOG1145.aln │ ├── KOG1145.hmm │ ├── KOG1148.aln │ ├── KOG1148.hmm │ ├── KOG1149.aln │ ├── KOG1149.hmm │ ├── KOG1158.aln │ ├── KOG1158.hmm │ ├── KOG1159.aln │ ├── KOG1159.hmm │ ├── KOG1180.aln │ ├── KOG1180.hmm │ ├── KOG1185.aln │ ├── KOG1185.hmm │ ├── KOG1211.aln │ ├── KOG1211.hmm │ ├── KOG1235.aln │ ├── KOG1235.hmm │ ├── KOG1241.aln │ ├── KOG1241.hmm │ ├── KOG1255.aln │ ├── KOG1255.hmm │ ├── KOG1268.aln │ ├── KOG1268.hmm │ ├── KOG1272.aln │ ├── KOG1272.hmm │ ├── KOG1291.aln │ ├── KOG1291.hmm │ ├── KOG1299.aln │ ├── KOG1299.hmm │ ├── KOG1300.aln │ ├── KOG1300.hmm │ ├── KOG1301.aln │ ├── KOG1301.hmm │ ├── KOG1322.aln │ ├── KOG1322.hmm │ ├── KOG1335.aln │ ├── KOG1335.hmm │ ├── KOG1342.aln │ ├── KOG1342.hmm │ ├── KOG1349.aln │ ├── KOG1349.hmm │ ├── KOG1350.aln │ ├── KOG1350.hmm │ ├── KOG1351.aln │ ├── KOG1351.hmm │ ├── KOG1353.aln │ ├── KOG1353.hmm │ ├── KOG1355.aln │ ├── KOG1355.hmm │ ├── KOG1358.aln │ ├── KOG1358.hmm │ ├── KOG1367.aln │ ├── KOG1367.hmm │ ├── KOG1370.aln │ ├── KOG1370.hmm │ ├── KOG1373.aln │ ├── KOG1373.hmm │ ├── KOG1374.aln │ ├── KOG1374.hmm │ ├── KOG1390.aln │ ├── KOG1390.hmm │ ├── KOG1393.aln │ ├── KOG1393.hmm │ ├── KOG1394.aln │ ├── KOG1394.hmm │ ├── KOG1415.aln │ ├── KOG1415.hmm │ ├── KOG1430.aln │ ├── KOG1430.hmm │ ├── KOG1433.aln │ ├── KOG1433.hmm │ ├── KOG1439.aln │ ├── KOG1439.hmm │ ├── KOG1448.aln │ ├── KOG1448.hmm │ ├── KOG1458.aln │ ├── KOG1458.hmm │ ├── KOG1463.aln │ ├── KOG1463.hmm │ ├── KOG1466.aln │ ├── KOG1466.hmm │ ├── KOG1468.aln │ ├── KOG1468.hmm │ ├── KOG1487.aln │ ├── KOG1487.hmm │ ├── KOG1491.aln │ ├── KOG1491.hmm │ ├── KOG1494.aln │ ├── KOG1494.hmm │ ├── KOG1498.aln │ ├── KOG1498.hmm │ ├── KOG1506.aln │ ├── KOG1506.hmm │ ├── KOG1523.aln │ ├── KOG1523.hmm │ ├── KOG1526.aln │ ├── KOG1526.hmm │ ├── KOG1531.aln │ ├── KOG1531.hmm │ ├── KOG1532.aln │ ├── KOG1532.hmm │ ├── KOG1533.aln │ ├── KOG1533.hmm │ ├── KOG1534.aln │ ├── KOG1534.hmm │ ├── KOG1535.aln │ ├── KOG1535.hmm │ ├── KOG1539.aln │ ├── KOG1539.hmm │ ├── KOG1540.aln │ ├── KOG1540.hmm │ ├── KOG1541.aln │ ├── KOG1541.hmm │ ├── KOG1549.aln │ ├── KOG1549.hmm │ ├── KOG1555.aln │ ├── KOG1555.hmm │ ├── KOG1556.aln │ ├── KOG1556.hmm │ ├── KOG1562.aln │ ├── KOG1562.hmm │ ├── KOG1566.aln │ ├── KOG1566.hmm │ ├── KOG1567.aln │ ├── KOG1567.hmm │ ├── KOG1568.aln │ ├── KOG1568.hmm │ ├── KOG1596.aln │ ├── KOG1596.hmm │ ├── KOG1597.aln │ ├── KOG1597.hmm │ ├── KOG1626.aln │ ├── KOG1626.hmm │ ├── KOG1636.aln │ ├── KOG1636.hmm │ ├── KOG1637.aln │ ├── KOG1637.hmm │ ├── KOG1641.aln │ ├── KOG1641.hmm │ ├── KOG1643.aln │ ├── KOG1643.hmm │ ├── KOG1644.aln │ ├── KOG1644.hmm │ ├── KOG1646.aln │ ├── KOG1646.hmm │ ├── KOG1647.aln │ ├── KOG1647.hmm │ ├── KOG1654.aln │ ├── KOG1654.hmm │ ├── KOG1662.aln │ ├── KOG1662.hmm │ ├── KOG1664.aln │ ├── KOG1664.hmm │ ├── KOG1668.aln │ ├── KOG1668.hmm │ ├── KOG1678.aln │ ├── KOG1678.hmm │ ├── KOG1688.aln │ ├── KOG1688.hmm │ ├── KOG1691.aln │ ├── KOG1691.hmm │ ├── KOG1692.aln │ ├── KOG1692.hmm │ ├── KOG1712.aln │ ├── KOG1712.hmm │ ├── KOG1722.aln │ ├── KOG1722.hmm │ ├── KOG1723.aln │ ├── KOG1723.hmm │ ├── KOG1727.aln │ ├── KOG1727.hmm │ ├── KOG1728.aln │ ├── KOG1728.hmm │ ├── KOG1733.aln │ ├── KOG1733.hmm │ ├── KOG1742.aln │ ├── KOG1742.hmm │ ├── KOG1746.aln │ ├── KOG1746.hmm │ ├── KOG1750.aln │ ├── KOG1750.hmm │ ├── KOG1753.aln │ ├── KOG1753.hmm │ ├── KOG1754.aln │ ├── KOG1754.hmm │ ├── KOG1755.aln │ ├── KOG1755.hmm │ ├── KOG1758.aln │ ├── KOG1758.hmm │ ├── KOG1760.aln │ ├── KOG1760.hmm │ ├── KOG1762.aln │ ├── KOG1762.hmm │ ├── KOG1769.aln │ ├── KOG1769.hmm │ ├── KOG1770.aln │ ├── KOG1770.hmm │ ├── KOG1772.aln │ ├── KOG1772.hmm │ ├── KOG1774.aln │ ├── KOG1774.hmm │ ├── KOG1775.aln │ ├── KOG1775.hmm │ ├── KOG1779.aln │ ├── KOG1779.hmm │ ├── KOG1780.aln │ ├── KOG1780.hmm │ ├── KOG1781.aln │ ├── KOG1781.hmm │ ├── KOG1782.aln │ ├── KOG1782.hmm │ ├── KOG1784.aln │ ├── KOG1784.hmm │ ├── KOG1795.aln │ ├── KOG1795.hmm │ ├── KOG1800.aln │ ├── KOG1800.hmm │ ├── KOG1816.aln │ ├── KOG1816.hmm │ ├── KOG1872.aln │ ├── KOG1872.hmm │ ├── KOG1885.aln │ ├── KOG1885.hmm │ ├── KOG1889.aln │ ├── KOG1889.hmm │ ├── KOG1915.aln │ ├── KOG1915.hmm │ ├── KOG1936.aln │ ├── KOG1936.hmm │ ├── KOG1942.aln │ ├── KOG1942.hmm │ ├── KOG1979.aln │ ├── KOG1979.hmm │ ├── KOG1980.aln │ ├── KOG1980.hmm │ ├── KOG1986.aln │ ├── KOG1986.hmm │ ├── KOG1992.aln │ ├── KOG1992.hmm │ ├── KOG2004.aln │ ├── KOG2004.hmm │ ├── KOG2014.aln │ ├── KOG2014.hmm │ ├── KOG2017.aln │ ├── KOG2017.hmm │ ├── KOG2035.aln │ ├── KOG2035.hmm │ ├── KOG2036.aln │ ├── KOG2036.hmm │ ├── KOG2044.aln │ ├── KOG2044.hmm │ ├── KOG2047.aln │ ├── KOG2047.hmm │ ├── KOG2067.aln │ ├── KOG2067.hmm │ ├── KOG2104.aln │ ├── KOG2104.hmm │ ├── KOG2189.aln │ ├── KOG2189.hmm │ ├── KOG2270.aln │ ├── KOG2270.hmm │ ├── KOG2276.aln │ ├── KOG2276.hmm │ ├── KOG2292.aln │ ├── KOG2292.hmm │ ├── KOG2303.aln │ ├── KOG2303.hmm │ ├── KOG2309.aln │ ├── KOG2309.hmm │ ├── KOG2311.aln │ ├── KOG2311.hmm │ ├── KOG2321.aln │ ├── KOG2321.hmm │ ├── KOG2387.aln │ ├── KOG2387.hmm │ ├── KOG2415.aln │ ├── KOG2415.hmm │ ├── KOG2446.aln │ ├── KOG2446.hmm │ ├── KOG2451.aln │ ├── KOG2451.hmm │ ├── KOG2467.aln │ ├── KOG2467.hmm │ ├── KOG2472.aln │ ├── KOG2472.hmm │ ├── KOG2481.aln │ ├── KOG2481.hmm │ ├── KOG2509.aln │ ├── KOG2509.hmm │ ├── KOG2519.aln │ ├── KOG2519.hmm │ ├── KOG2529.aln │ ├── KOG2529.hmm │ ├── KOG2531.aln │ ├── KOG2531.hmm │ ├── KOG2535.aln │ ├── KOG2535.hmm │ ├── KOG2537.aln │ ├── KOG2537.hmm │ ├── KOG2555.aln │ ├── KOG2555.hmm │ ├── KOG2572.aln │ ├── KOG2572.hmm │ ├── KOG2574.aln │ ├── KOG2574.hmm │ ├── KOG2575.aln │ ├── KOG2575.hmm │ ├── KOG2606.aln │ ├── KOG2606.hmm │ ├── KOG2613.aln │ ├── KOG2613.hmm │ ├── KOG2617.aln │ ├── KOG2617.hmm │ ├── KOG2623.aln │ ├── KOG2623.hmm │ ├── KOG2636.aln │ ├── KOG2636.hmm │ ├── KOG2638.aln │ ├── KOG2638.hmm │ ├── KOG2653.aln │ ├── KOG2653.hmm │ ├── KOG2670.aln │ ├── KOG2670.hmm │ ├── KOG2680.aln │ ├── KOG2680.hmm │ ├── KOG2700.aln │ ├── KOG2700.hmm │ ├── KOG2703.aln │ ├── KOG2703.hmm │ ├── KOG2707.aln │ ├── KOG2707.hmm │ ├── KOG2711.aln │ ├── KOG2711.hmm │ ├── KOG2719.aln │ ├── KOG2719.hmm │ ├── KOG2726.aln │ ├── KOG2726.hmm │ ├── KOG2728.aln │ ├── KOG2728.hmm │ ├── KOG2732.aln │ ├── KOG2732.hmm │ ├── KOG2738.aln │ ├── KOG2738.hmm │ ├── KOG2749.aln │ ├── KOG2749.hmm │ ├── KOG2754.aln │ ├── KOG2754.hmm │ ├── KOG2757.aln │ ├── KOG2757.hmm │ ├── KOG2767.aln │ ├── KOG2767.hmm │ ├── KOG2770.aln │ ├── KOG2770.hmm │ ├── KOG2772.aln │ ├── KOG2772.hmm │ ├── KOG2775.aln │ ├── KOG2775.hmm │ ├── KOG2781.aln │ ├── KOG2781.hmm │ ├── KOG2783.aln │ ├── KOG2783.hmm │ ├── KOG2784.aln │ ├── KOG2784.hmm │ ├── KOG2785.aln │ ├── KOG2785.hmm │ ├── KOG2792.aln │ ├── KOG2792.hmm │ ├── KOG2803.aln │ ├── KOG2803.hmm │ ├── KOG2807.aln │ ├── KOG2807.hmm │ ├── KOG2825.aln │ ├── KOG2825.hmm │ ├── KOG2833.aln │ ├── KOG2833.hmm │ ├── KOG2851.aln │ ├── KOG2851.hmm │ ├── KOG2854.aln │ ├── KOG2854.hmm │ ├── KOG2855.aln │ ├── KOG2855.hmm │ ├── KOG2874.aln │ ├── KOG2874.hmm │ ├── KOG2877.aln │ ├── KOG2877.hmm │ ├── KOG2906.aln │ ├── KOG2906.hmm │ ├── KOG2908.aln │ ├── KOG2908.hmm │ ├── KOG2909.aln │ ├── KOG2909.hmm │ ├── KOG2916.aln │ ├── KOG2916.hmm │ ├── KOG2930.aln │ ├── KOG2930.hmm │ ├── KOG2948.aln │ ├── KOG2948.hmm │ ├── KOG2952.aln │ ├── KOG2952.hmm │ ├── KOG2957.aln │ ├── KOG2957.hmm │ ├── KOG2967.aln │ ├── KOG2967.hmm │ ├── KOG2971.aln │ ├── KOG2971.hmm │ ├── KOG2981.aln │ ├── KOG2981.hmm │ ├── KOG2988.aln │ ├── KOG2988.hmm │ ├── KOG3013.aln │ ├── KOG3013.hmm │ ├── KOG3022.aln │ ├── KOG3022.hmm │ ├── KOG3031.aln │ ├── KOG3031.hmm │ ├── KOG3048.aln │ ├── KOG3048.hmm │ ├── KOG3049.aln │ ├── KOG3049.hmm │ ├── KOG3052.aln │ ├── KOG3052.hmm │ ├── KOG3064.aln │ ├── KOG3064.hmm │ ├── KOG3079.aln │ ├── KOG3079.hmm │ ├── KOG3090.aln │ ├── KOG3090.hmm │ ├── KOG3106.aln │ ├── KOG3106.hmm │ ├── KOG3147.aln │ ├── KOG3147.hmm │ ├── KOG3149.aln │ ├── KOG3149.hmm │ ├── KOG3157.aln │ ├── KOG3157.hmm │ ├── KOG3163.aln │ ├── KOG3163.hmm │ ├── KOG3164.aln │ ├── KOG3164.hmm │ ├── KOG3167.aln │ ├── KOG3167.hmm │ ├── KOG3174.aln │ ├── KOG3174.hmm │ ├── KOG3180.aln │ ├── KOG3180.hmm │ ├── KOG3185.aln │ ├── KOG3185.hmm │ ├── KOG3188.aln │ ├── KOG3188.hmm │ ├── KOG3189.aln │ ├── KOG3189.hmm │ ├── KOG3204.aln │ ├── KOG3204.hmm │ ├── KOG3205.aln │ ├── KOG3205.hmm │ ├── KOG3218.aln │ ├── KOG3218.hmm │ ├── KOG3222.aln │ ├── KOG3222.hmm │ ├── KOG3229.aln │ ├── KOG3229.hmm │ ├── KOG3232.aln │ ├── KOG3232.hmm │ ├── KOG3237.aln │ ├── KOG3237.hmm │ ├── KOG3239.aln │ ├── KOG3239.hmm │ ├── KOG3271.aln │ ├── KOG3271.hmm │ ├── KOG3273.aln │ ├── KOG3273.hmm │ ├── KOG3275.aln │ ├── KOG3275.hmm │ ├── KOG3283.aln │ ├── KOG3283.hmm │ ├── KOG3284.aln │ ├── KOG3284.hmm │ ├── KOG3285.aln │ ├── KOG3285.hmm │ ├── KOG3291.aln │ ├── KOG3291.hmm │ ├── KOG3295.aln │ ├── KOG3295.hmm │ ├── KOG3297.aln │ ├── KOG3297.hmm │ ├── KOG3301.aln │ ├── KOG3301.hmm │ ├── KOG3311.aln │ ├── KOG3311.hmm │ ├── KOG3313.aln │ ├── KOG3313.hmm │ ├── KOG3318.aln │ ├── KOG3318.hmm │ ├── KOG3320.aln │ ├── KOG3320.hmm │ ├── KOG3330.aln │ ├── KOG3330.hmm │ ├── KOG3343.aln │ ├── KOG3343.hmm │ ├── KOG3349.aln │ ├── KOG3349.hmm │ ├── KOG3361.aln │ ├── KOG3361.hmm │ ├── KOG3372.aln │ ├── KOG3372.hmm │ ├── KOG3387.aln │ ├── KOG3387.hmm │ ├── KOG3400.aln │ ├── KOG3400.hmm │ ├── KOG3404.aln │ ├── KOG3404.hmm │ ├── KOG3405.aln │ ├── KOG3405.hmm │ ├── KOG3406.aln │ ├── KOG3406.hmm │ ├── KOG3411.aln │ ├── KOG3411.hmm │ ├── KOG3418.aln │ ├── KOG3418.hmm │ ├── KOG3428.aln │ ├── KOG3428.hmm │ ├── KOG3430.aln │ ├── KOG3430.hmm │ ├── KOG3432.aln │ ├── KOG3432.hmm │ ├── KOG3436.aln │ ├── KOG3436.hmm │ ├── KOG3442.aln │ ├── KOG3442.hmm │ ├── KOG3448.aln │ ├── KOG3448.hmm │ ├── KOG3449.aln │ ├── KOG3449.hmm │ ├── KOG3453.aln │ ├── KOG3453.hmm │ ├── KOG3457.aln │ ├── KOG3457.hmm │ ├── KOG3459.aln │ ├── KOG3459.hmm │ ├── KOG3463.aln │ ├── KOG3463.hmm │ ├── KOG3464.aln │ ├── KOG3464.hmm │ ├── KOG3475.aln │ ├── KOG3475.hmm │ ├── KOG3479.aln │ ├── KOG3479.hmm │ ├── KOG3480.aln │ ├── KOG3480.hmm │ ├── KOG3482.aln │ ├── KOG3482.hmm │ ├── KOG3489.aln │ ├── KOG3489.hmm │ ├── KOG3493.aln │ ├── KOG3493.hmm │ ├── KOG3497.aln │ ├── KOG3497.hmm │ ├── KOG3498.aln │ ├── KOG3498.hmm │ ├── KOG3499.aln │ ├── KOG3499.hmm │ ├── KOG3502.aln │ ├── KOG3502.hmm │ ├── KOG3503.aln │ ├── KOG3503.hmm │ ├── KOG3506.aln │ ├── KOG3506.hmm │ ├── KOG3855.aln │ ├── KOG3855.hmm │ ├── KOG3954.aln │ ├── KOG3954.hmm │ ├── KOG3974.aln │ ├── KOG3974.hmm │ ├── KOG4392.aln │ ├── KOG4392.hmm │ ├── KOG4655.aln │ └── KOG4655.hmm ├── kogs.fa ├── profiles_cutoff.tbl └── self.param.template ├── lib ├── Cegma.pm ├── FAlite.pm ├── HMMstar.pm └── geneid.pm ├── release_notes.md ├── sample ├── sample.dna └── sample.prot ├── 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