├── .gitattributes ├── .gitignore ├── 1_experimental_overview.png ├── AAnet_torch ├── __init__.py ├── data │ ├── __init__.py │ ├── simplex_deformation.py │ └── stereo_sphere_projection.py ├── models │ ├── AAnet_VAE.py │ ├── AAnet_base.py │ ├── AAnet_vanilla.py │ └── __init__.py ├── plot.py ├── types_.py ├── utils.py └── version.py ├── LICENSE.md ├── README.md └── example_notebooks ├── AAnet_MNIST_example.ipynb ├── AAnet_simplex_example.ipynb ├── AAnet_single-cell_example.ipynb ├── NMF.py ├── Other_comparisons_simplex_example.ipynb ├── PCHA.py ├── README.md ├── data ├── MNIST │ └── raw │ │ ├── t10k-images-idx3-ubyte │ │ ├── t10k-images-idx3-ubyte.gz │ │ ├── t10k-labels-idx1-ubyte │ │ ├── t10k-labels-idx1-ubyte.gz │ │ ├── train-images-idx3-ubyte │ │ ├── train-images-idx3-ubyte.gz │ │ ├── train-labels-idx1-ubyte │ │ └── train-labels-idx1-ubyte.gz └── beta_cells_hfd.h5ad ├── furthest_sum.py ├── javadi.py └── results ├── Beta_cell_AAnet_results.npz └── Beta_cells_model_state_dict 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