├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── feature_request.md │ └── question.md └── workflows │ ├── deploy.yml │ ├── pre-commit.yml │ └── run_tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── Rmagic ├── .Rbuildignore ├── .pre-commit-config.yaml ├── .pre-commit.r_requirements.txt ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R │ ├── magic.R │ ├── magic_testdata.R │ ├── preprocessing.R │ └── utils.R ├── README.Rmd ├── README.md ├── data-raw │ └── generate_test_data.R ├── data │ └── magic_testdata.rda ├── inst │ ├── CITATION │ └── examples │ │ ├── BMMSC_data_R_after_magic.png │ │ ├── BMMSC_data_R_before_magic.png │ │ ├── BMMSC_data_R_pca_colored_by_magic.png │ │ ├── BMMSC_data_R_phate_colored_by_magic.png │ │ ├── EMT_data_R_after_magic.png │ │ ├── EMT_data_R_before_magic.png │ │ ├── EMT_data_R_pca_colored_by_magic.png │ │ ├── EMT_data_R_phate_colored_by_magic.png │ │ ├── bonemarrow_tutorial.Rmd │ │ ├── bonemarrow_tutorial.html │ │ ├── emt_tutorial.Rmd │ │ └── emt_tutorial.html ├── man │ ├── as.data.frame.Rd │ ├── as.matrix.Rd │ ├── check_pymagic_version.Rd │ ├── figures │ │ ├── README-plot_magic-1.png │ │ ├── README-plot_raw-1.png │ │ ├── README-plot_reduced_t-1.png │ │ ├── README-run_pca-1.png │ │ ├── README-run_phate-1.png │ │ ├── README-unnamed-chunk-1-1.png │ │ └── README-unnamed-chunk-3-1.png │ ├── ggplot.Rd │ ├── install.magic.Rd │ ├── library.size.normalize.Rd │ ├── magic.Rd │ ├── magic_testdata.Rd │ ├── print.Rd │ ├── pymagic_is_available.Rd │ └── summary.Rd └── tests │ └── test_magic.R ├── data ├── HMLE_TGFb_day_8_10.csv.gz └── test_data.csv ├── magic.gif ├── matlab ├── .DS_Store ├── MAGIC Tutorial MATLAB-EMT.pptx ├── compute_kernel.m ├── compute_operator.m ├── compute_optimal_t.m ├── load_10x.m ├── mmread.m ├── project_genes.m ├── randPCA.m ├── run_magic.m ├── svdpca.m ├── svdpca_sparse.m └── test_magic.m ├── python ├── README.rst ├── doc │ ├── Makefile │ └── source │ │ ├── api.rst │ │ ├── conf.py │ │ ├── index.rst │ │ ├── installation.rst │ │ ├── requirements.txt │ │ └── tutorial.rst ├── magic │ ├── __init__.py │ ├── after_magic_example.png │ ├── before_magic_example.png │ ├── magic.py │ ├── plot.py │ ├── utils.py │ └── version.py ├── requirements.txt ├── setup.py ├── test │ └── test.py └── tutorial_notebooks │ ├── bonemarrow_tutorial.ipynb │ └── emt_tutorial.ipynb └── setup.cfg /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.github/ISSUE_TEMPLATE/feature_request.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/question.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.github/ISSUE_TEMPLATE/question.md -------------------------------------------------------------------------------- /.github/workflows/deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.github/workflows/deploy.yml -------------------------------------------------------------------------------- /.github/workflows/pre-commit.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.github/workflows/pre-commit.yml -------------------------------------------------------------------------------- /.github/workflows/run_tests.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.github/workflows/run_tests.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.gitignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/README.md -------------------------------------------------------------------------------- /Rmagic/.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/.Rbuildignore -------------------------------------------------------------------------------- /Rmagic/.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/.pre-commit-config.yaml -------------------------------------------------------------------------------- /Rmagic/.pre-commit.r_requirements.txt: -------------------------------------------------------------------------------- 1 | docopt 2 | styler 3 | git2r 4 | lintr 5 | roxygen2 6 | precommit 7 | -------------------------------------------------------------------------------- /Rmagic/DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/DESCRIPTION -------------------------------------------------------------------------------- /Rmagic/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/LICENSE -------------------------------------------------------------------------------- /Rmagic/NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/NAMESPACE -------------------------------------------------------------------------------- /Rmagic/R/magic.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/R/magic.R -------------------------------------------------------------------------------- /Rmagic/R/magic_testdata.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/R/magic_testdata.R -------------------------------------------------------------------------------- /Rmagic/R/preprocessing.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/R/preprocessing.R -------------------------------------------------------------------------------- /Rmagic/R/utils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/R/utils.R -------------------------------------------------------------------------------- /Rmagic/README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/README.Rmd -------------------------------------------------------------------------------- /Rmagic/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/README.md -------------------------------------------------------------------------------- /Rmagic/data-raw/generate_test_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/data-raw/generate_test_data.R -------------------------------------------------------------------------------- /Rmagic/data/magic_testdata.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/data/magic_testdata.rda -------------------------------------------------------------------------------- /Rmagic/inst/CITATION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/CITATION -------------------------------------------------------------------------------- /Rmagic/inst/examples/BMMSC_data_R_after_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/BMMSC_data_R_after_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/BMMSC_data_R_before_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/BMMSC_data_R_before_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/BMMSC_data_R_pca_colored_by_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/BMMSC_data_R_pca_colored_by_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/BMMSC_data_R_phate_colored_by_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/BMMSC_data_R_phate_colored_by_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/EMT_data_R_after_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/EMT_data_R_after_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/EMT_data_R_before_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/EMT_data_R_before_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/EMT_data_R_pca_colored_by_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/EMT_data_R_pca_colored_by_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/EMT_data_R_phate_colored_by_magic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/EMT_data_R_phate_colored_by_magic.png -------------------------------------------------------------------------------- /Rmagic/inst/examples/bonemarrow_tutorial.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/bonemarrow_tutorial.Rmd -------------------------------------------------------------------------------- /Rmagic/inst/examples/bonemarrow_tutorial.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/bonemarrow_tutorial.html -------------------------------------------------------------------------------- /Rmagic/inst/examples/emt_tutorial.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/emt_tutorial.Rmd -------------------------------------------------------------------------------- /Rmagic/inst/examples/emt_tutorial.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/inst/examples/emt_tutorial.html -------------------------------------------------------------------------------- /Rmagic/man/as.data.frame.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/as.data.frame.Rd -------------------------------------------------------------------------------- /Rmagic/man/as.matrix.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/as.matrix.Rd -------------------------------------------------------------------------------- /Rmagic/man/check_pymagic_version.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/check_pymagic_version.Rd -------------------------------------------------------------------------------- /Rmagic/man/figures/README-plot_magic-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-plot_magic-1.png -------------------------------------------------------------------------------- /Rmagic/man/figures/README-plot_raw-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-plot_raw-1.png -------------------------------------------------------------------------------- /Rmagic/man/figures/README-plot_reduced_t-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-plot_reduced_t-1.png -------------------------------------------------------------------------------- /Rmagic/man/figures/README-run_pca-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-run_pca-1.png -------------------------------------------------------------------------------- /Rmagic/man/figures/README-run_phate-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-run_phate-1.png -------------------------------------------------------------------------------- /Rmagic/man/figures/README-unnamed-chunk-1-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-unnamed-chunk-1-1.png -------------------------------------------------------------------------------- /Rmagic/man/figures/README-unnamed-chunk-3-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/figures/README-unnamed-chunk-3-1.png -------------------------------------------------------------------------------- /Rmagic/man/ggplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/ggplot.Rd -------------------------------------------------------------------------------- /Rmagic/man/install.magic.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/install.magic.Rd -------------------------------------------------------------------------------- /Rmagic/man/library.size.normalize.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/library.size.normalize.Rd -------------------------------------------------------------------------------- /Rmagic/man/magic.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/magic.Rd -------------------------------------------------------------------------------- /Rmagic/man/magic_testdata.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/magic_testdata.Rd -------------------------------------------------------------------------------- /Rmagic/man/print.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/print.Rd -------------------------------------------------------------------------------- /Rmagic/man/pymagic_is_available.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/pymagic_is_available.Rd -------------------------------------------------------------------------------- /Rmagic/man/summary.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/man/summary.Rd -------------------------------------------------------------------------------- /Rmagic/tests/test_magic.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/Rmagic/tests/test_magic.R -------------------------------------------------------------------------------- /data/HMLE_TGFb_day_8_10.csv.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/data/HMLE_TGFb_day_8_10.csv.gz -------------------------------------------------------------------------------- /data/test_data.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/data/test_data.csv -------------------------------------------------------------------------------- /magic.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/magic.gif -------------------------------------------------------------------------------- /matlab/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/.DS_Store -------------------------------------------------------------------------------- /matlab/MAGIC Tutorial MATLAB-EMT.pptx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/MAGIC Tutorial MATLAB-EMT.pptx -------------------------------------------------------------------------------- /matlab/compute_kernel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/compute_kernel.m -------------------------------------------------------------------------------- /matlab/compute_operator.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/compute_operator.m -------------------------------------------------------------------------------- /matlab/compute_optimal_t.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/compute_optimal_t.m -------------------------------------------------------------------------------- /matlab/load_10x.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/load_10x.m -------------------------------------------------------------------------------- /matlab/mmread.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/mmread.m -------------------------------------------------------------------------------- /matlab/project_genes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/project_genes.m -------------------------------------------------------------------------------- /matlab/randPCA.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/randPCA.m -------------------------------------------------------------------------------- /matlab/run_magic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/run_magic.m -------------------------------------------------------------------------------- /matlab/svdpca.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/svdpca.m -------------------------------------------------------------------------------- /matlab/svdpca_sparse.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/svdpca_sparse.m -------------------------------------------------------------------------------- /matlab/test_magic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/matlab/test_magic.m -------------------------------------------------------------------------------- /python/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/README.rst -------------------------------------------------------------------------------- /python/doc/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/Makefile -------------------------------------------------------------------------------- /python/doc/source/api.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/source/api.rst -------------------------------------------------------------------------------- /python/doc/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/source/conf.py -------------------------------------------------------------------------------- /python/doc/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/source/index.rst -------------------------------------------------------------------------------- /python/doc/source/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/source/installation.rst -------------------------------------------------------------------------------- /python/doc/source/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/source/requirements.txt -------------------------------------------------------------------------------- /python/doc/source/tutorial.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/doc/source/tutorial.rst -------------------------------------------------------------------------------- /python/magic/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/magic/__init__.py -------------------------------------------------------------------------------- /python/magic/after_magic_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/magic/after_magic_example.png -------------------------------------------------------------------------------- /python/magic/before_magic_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/magic/before_magic_example.png -------------------------------------------------------------------------------- /python/magic/magic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/magic/magic.py -------------------------------------------------------------------------------- /python/magic/plot.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/magic/plot.py -------------------------------------------------------------------------------- /python/magic/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/magic/utils.py -------------------------------------------------------------------------------- /python/magic/version.py: -------------------------------------------------------------------------------- 1 | __version__ = "3.0.0" 2 | -------------------------------------------------------------------------------- /python/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/requirements.txt -------------------------------------------------------------------------------- /python/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/setup.py -------------------------------------------------------------------------------- /python/test/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/test/test.py -------------------------------------------------------------------------------- /python/tutorial_notebooks/bonemarrow_tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/tutorial_notebooks/bonemarrow_tutorial.ipynb -------------------------------------------------------------------------------- /python/tutorial_notebooks/emt_tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/python/tutorial_notebooks/emt_tutorial.ipynb -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/MAGIC/HEAD/setup.cfg --------------------------------------------------------------------------------