├── .gitignore ├── .travis.yml ├── CONTRIBUTING.md ├── Images ├── Algorithm Overview.png ├── Gradient Analysis.png └── Zoom in.png ├── LICENSE ├── MANIFEST.in ├── README.md ├── Tutorial └── 10X_pbmc.ipynb ├── autoblack.sh ├── examples ├── FACS.ipynb └── PBMCs.ipynb ├── multiscale_phate ├── __init__.py ├── compress.py ├── condense.py ├── diffuse.py ├── embed.py ├── multiscale_phate.py ├── tree.py ├── utils.py ├── version.py └── visualize.py ├── requirements.txt ├── setup.py ├── test └── test.py └── unittest.cfg /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/Multiscale_PHATE/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/KrishnaswamyLab/Multiscale_PHATE/HEAD/.travis.yml 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