├── .gitignore ├── LiviaNET ├── Dataset │ ├── Label │ │ ├── GT_Img1.mat │ │ ├── GT_Img2.mat │ │ ├── GT_Img3.mat │ │ ├── GT_Img4.mat │ │ ├── GT_Img5.mat │ │ ├── GT_Img6.mat │ │ ├── GT_Img7.mat │ │ └── Readme.txt │ ├── MR │ │ ├── MR_Img1.mat │ │ ├── MR_Img2.mat │ │ ├── MR_Img3.mat │ │ ├── MR_Img4.mat │ │ ├── MR_Img5.mat │ │ ├── MR_Img6.mat │ │ ├── MR_Img7.mat │ │ └── Readme.txt │ ├── ROI │ │ ├── ROI_Img1.mat │ │ ├── ROI_Img2.mat │ │ ├── ROI_Img3.mat │ │ ├── ROI_Img4.mat │ │ ├── ROI_Img5.mat │ │ ├── ROI_Img6.mat │ │ ├── ROI_Img7.mat │ │ └── Readme.txt │ └── Readme.txt ├── Images │ ├── NeuroFeatMaps.jpg │ └── NeuroRes2.jpg ├── License ├── README.md ├── src │ ├── LiviaNET_Config.ini │ ├── LiviaNET_Config_NeuroPaper.ini │ ├── LiviaNET_Segmentation.ini │ ├── LiviaNet │ │ ├── LiviaNet.py │ │ ├── LiviaNet3DConvLayer.py │ │ ├── LiviaSoftmax.py │ │ ├── Modules │ │ │ ├── General │ │ │ │ ├── Evaluation.py │ │ │ │ ├── Utils.py │ │ │ │ ├── __init__.py │ │ │ │ └── read.txt │ │ │ ├── IO │ │ │ │ ├── ImgOperations │ │ │ │ │ ├── __init__.py │ │ │ │ │ └── imgOp.py │ │ │ │ ├── loadData.py │ │ │ │ ├── sampling.py │ │ │ │ └── saveData.py │ │ │ ├── NeuralNetwork │ │ │ │ ├── ActivationFunctions.py │ │ │ │ ├── __init__.py │ │ │ │ └── layerOperations.py │ │ │ ├── Parsers │ │ │ │ ├── __init__.py │ │ │ │ └── parsersUtils.py │ │ │ └── __init__.py │ │ ├── __init__.py │ │ ├── generateNetwork.py │ │ ├── startTesting.py │ │ └── startTraining.py │ ├── generateROI.py │ ├── networkSegmentation.py │ ├── networkTraining.py │ └── processLabels.py └── trainedWeights │ ├── Readme.txt │ ├── weights_ConvLayer_0.npy │ ├── weights_ConvLayer_1.npy │ └── weights_ConvLayer_2.npy ├── README.md └── SemiDenseNet ├── Images ├── SemiDenseNET.png ├── __init__.txt └── brainModalities.png ├── License ├── README.md └── src ├── LiviaNET_Config.ini ├── LiviaNET_Segmentation.ini ├── LiviaNet ├── LiviaNet3DConvLayer.py ├── LiviaSemiDenseNet.py ├── LiviaSoftmax.py ├── Modules │ ├── General │ │ ├── Evaluation.py │ │ ├── Utils.py │ │ ├── __init__.py │ │ └── read.txt │ ├── IO │ │ ├── ImgOperations │ │ │ ├── __init__.py │ │ │ └── imgOp.py │ │ ├── loadData.py │ │ ├── sampling.py │ │ └── saveData.py │ ├── NeuralNetwork │ │ ├── ActivationFunctions.py │ │ ├── __init__.py │ │ └── layerOperations.py │ ├── Parsers │ │ ├── __init__.py │ │ └── parsersUtils.py │ └── __init__.py ├── __init__.py ├── generateNetwork.py ├── startTesting.py └── startTraining.py ├── generateROI.py ├── networkSegmentation.py ├── networkTraining.py └── processLabels.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/.gitignore -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img1.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img1.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img2.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img2.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img3.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img3.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img4.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img4.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img5.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img5.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img6.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img6.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/GT_Img7.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Label/GT_Img7.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/Label/Readme.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img1.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img1.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img2.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img2.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img3.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img3.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img4.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img4.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img5.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img5.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img6.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img6.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/MR_Img7.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/MR/MR_Img7.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/MR/Readme.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img1.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img1.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img2.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img2.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img3.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img3.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img4.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img4.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img5.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img5.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img6.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img6.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/ROI_Img7.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/ROI/ROI_Img7.mat -------------------------------------------------------------------------------- /LiviaNET/Dataset/ROI/Readme.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/Dataset/Readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Dataset/Readme.txt -------------------------------------------------------------------------------- /LiviaNET/Images/NeuroFeatMaps.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Images/NeuroFeatMaps.jpg -------------------------------------------------------------------------------- /LiviaNET/Images/NeuroRes2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/Images/NeuroRes2.jpg -------------------------------------------------------------------------------- /LiviaNET/License: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/License -------------------------------------------------------------------------------- /LiviaNET/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/README.md -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNET_Config.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNET_Config.ini -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNET_Config_NeuroPaper.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNET_Config_NeuroPaper.ini -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNET_Segmentation.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNET_Segmentation.ini -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/LiviaNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/LiviaNet.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/LiviaNet3DConvLayer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/LiviaNet3DConvLayer.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/LiviaSoftmax.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/LiviaSoftmax.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/General/Evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/General/Evaluation.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/General/Utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/General/Utils.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/General/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/General/read.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/IO/ImgOperations/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/IO/ImgOperations/imgOp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/IO/ImgOperations/imgOp.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/IO/loadData.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/IO/loadData.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/IO/sampling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/IO/sampling.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/IO/saveData.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/IO/saveData.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/NeuralNetwork/ActivationFunctions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/NeuralNetwork/ActivationFunctions.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/NeuralNetwork/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/NeuralNetwork/layerOperations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/NeuralNetwork/layerOperations.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/Parsers/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/Parsers/parsersUtils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/Modules/Parsers/parsersUtils.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/Modules/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/generateNetwork.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/generateNetwork.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/startTesting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/startTesting.py -------------------------------------------------------------------------------- /LiviaNET/src/LiviaNet/startTraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/LiviaNet/startTraining.py -------------------------------------------------------------------------------- /LiviaNET/src/generateROI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/generateROI.py -------------------------------------------------------------------------------- /LiviaNET/src/networkSegmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/networkSegmentation.py -------------------------------------------------------------------------------- /LiviaNET/src/networkTraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/networkTraining.py -------------------------------------------------------------------------------- /LiviaNET/src/processLabels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/src/processLabels.py -------------------------------------------------------------------------------- /LiviaNET/trainedWeights/Readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/trainedWeights/Readme.txt -------------------------------------------------------------------------------- /LiviaNET/trainedWeights/weights_ConvLayer_0.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/trainedWeights/weights_ConvLayer_0.npy -------------------------------------------------------------------------------- /LiviaNET/trainedWeights/weights_ConvLayer_1.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/trainedWeights/weights_ConvLayer_1.npy -------------------------------------------------------------------------------- /LiviaNET/trainedWeights/weights_ConvLayer_2.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/LiviaNET/trainedWeights/weights_ConvLayer_2.npy -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/README.md -------------------------------------------------------------------------------- /SemiDenseNet/Images/SemiDenseNET.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/Images/SemiDenseNET.png -------------------------------------------------------------------------------- /SemiDenseNet/Images/__init__.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/Images/brainModalities.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/Images/brainModalities.png -------------------------------------------------------------------------------- /SemiDenseNet/License: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/License -------------------------------------------------------------------------------- /SemiDenseNet/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/README.md -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNET_Config.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNET_Config.ini -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNET_Segmentation.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNET_Segmentation.ini -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/LiviaNet3DConvLayer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/LiviaNet3DConvLayer.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/LiviaSemiDenseNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/LiviaSemiDenseNet.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/LiviaSoftmax.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/LiviaSoftmax.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/General/Evaluation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/General/Evaluation.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/General/Utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/General/Utils.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/General/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/General/read.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/IO/ImgOperations/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/IO/ImgOperations/imgOp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/IO/ImgOperations/imgOp.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/IO/loadData.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/IO/loadData.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/IO/sampling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/IO/sampling.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/IO/saveData.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/IO/saveData.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/NeuralNetwork/ActivationFunctions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/NeuralNetwork/ActivationFunctions.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/NeuralNetwork/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/NeuralNetwork/layerOperations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/NeuralNetwork/layerOperations.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/Parsers/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/Parsers/parsersUtils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/Modules/Parsers/parsersUtils.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/Modules/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/generateNetwork.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/generateNetwork.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/startTesting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/startTesting.py -------------------------------------------------------------------------------- /SemiDenseNet/src/LiviaNet/startTraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/LiviaNet/startTraining.py -------------------------------------------------------------------------------- /SemiDenseNet/src/generateROI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/generateROI.py -------------------------------------------------------------------------------- /SemiDenseNet/src/networkSegmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/networkSegmentation.py -------------------------------------------------------------------------------- /SemiDenseNet/src/networkTraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/networkTraining.py -------------------------------------------------------------------------------- /SemiDenseNet/src/processLabels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LIVIAETS/MedicalImageSegmentation/HEAD/SemiDenseNet/src/processLabels.py --------------------------------------------------------------------------------