├── .gitattributes ├── .gitignore ├── CHANGELOG.md ├── CONTRIBUTING.md ├── LICENSE ├── Makefile ├── NOTICE ├── README.md ├── app.py ├── app ├── __init__.py ├── agents.py ├── config.py ├── models.py ├── tools │ ├── __init__.py │ └── arxiv_search.py └── utils.py ├── config.yaml ├── docs ├── SOTA-ChatGPT-5-Pro.md ├── SOTA-Claude-4.1.md ├── SOTA-grok4.md ├── TODO.md ├── claude_planning.md ├── deployment.md ├── huggingface_deployment.md ├── literature_integration_plan.md └── plan.md ├── graph_visualizer.py ├── requirements.txt ├── results ├── app_log_2025-02-28_09-27-02.txt ├── app_log_2025-02-28_10-30-14.txt ├── app_log_2025-02-28_11-27-44.txt ├── app_log_2025-02-28_12-25-26.txt ├── app_log_2025-02-28_12-30-46.txt ├── app_log_2025-02-28_12-35-28.txt ├── app_log_2025-02-28_12-41-50.txt ├── app_log_2025-02-28_12-54-07.txt ├── app_log_2025-02-28_13-00-01.txt ├── app_log_2025-02-28_13-05-08.txt ├── app_log_2025-02-28_13-09-55.txt ├── app_log_2025-02-28_13-13-27.txt ├── app_log_2025-02-28_13-21-17.txt ├── app_log_2025-02-28_13-32-33.txt ├── app_log_2025-02-28_13-41-01.txt ├── app_log_2025-02-28_13-49-24.txt ├── app_log_2025-02-28_13-57-26.txt ├── app_log_2025-02-28_14-02-35.txt ├── app_log_2025-02-28_14-10-06.txt ├── app_log_2025-02-28_14-20-23.txt ├── app_log_2025-02-28_14-33-31.txt ├── app_log_2025-02-28_14-41-58.txt ├── app_log_2025-02-28_14-48-24.txt ├── app_log_2025-02-28_14-52-17.txt ├── app_log_2025-02-28_14-58-00.txt ├── app_log_2025-02-28_15-05-41.txt ├── app_log_2025-02-28_15-12-10.txt ├── app_log_2025-02-28_15-22-38.txt ├── app_log_2025-02-28_15-25-13.txt ├── app_log_2025-02-28_15-25-14.txt ├── app_log_2025-02-28_15-25-15.txt ├── app_log_2025-02-28_15-30-29.txt ├── app_log_2025-02-28_15-34-41.txt ├── app_log_2025-03-26_14-00-56.txt ├── app_log_2025-03-26_14-04-17.txt ├── app_log_2025-04-03_20-06-56.txt ├── app_log_2025-04-03_20-25-55.txt ├── app_log_2025-04-03_20-27-25.txt ├── app_log_2025-04-03_21-09-46.txt ├── app_log_2025-04-03_21-34-38.txt ├── app_log_2025-04-03_21-38-36.txt ├── app_log_2025-04-03_21-40-06.txt ├── app_log_2025-05-23_14-42-02.txt ├── app_log_2025-05-23_14-47-21.txt ├── app_log_2025-05-31_17-40-14.txt ├── app_log_2025-07-28_11-16-28.txt ├── app_log_2025-07-28_12-26-45.txt ├── log_2025-02-22_23-07-32.txt ├── log_2025-02-22_23-12-15.txt └── sample.user.output.txt └── tests ├── __init__.py ├── test_agents.py ├── test_api.py ├── test_arxiv.py ├── test_gradio.py ├── test_graph.html ├── test_model_filtering.py ├── test_similarity.py └── test_visjs_graph.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LLNL/open-ai-co-scientist/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LLNL/open-ai-co-scientist/HEAD/.gitignore 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