├── .github └── workflows │ └── main.yml ├── .gitignore ├── .gitlab-ci.yml ├── CMakeLists.txt ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── CONTRIBUTORS.md ├── ChangeLog ├── LICENSE.TXT ├── README.md ├── cmake ├── FindMySQL.cmake ├── FindPDSH.cmake ├── FindYOGRT.cmake ├── SCR_ADD_TEST.cmake ├── SCR_DEPENDENCIES.cmake ├── SCR_OPTIONS.cmake ├── SetupMPI.cmake ├── config.h.in └── scrConfig.cmake.in ├── doc-dev ├── .readthedocs.yaml └── rst │ ├── _templates │ └── layout.html │ ├── conf.py │ ├── developers │ ├── containers.rst │ ├── dataset.rst │ ├── drain.rst │ ├── fig │ │ ├── aggr_bw.png │ │ ├── communicators.png │ │ ├── directories.png │ │ ├── directories_wide.png │ │ ├── partner_selection.png │ │ ├── reduce_scatter.png │ │ ├── restart.png │ │ ├── xor.png │ │ ├── xor_general.png │ │ ├── xor_reduce.png │ │ └── xor_selection.png │ ├── file_filemap.rst │ ├── file_flush.rst │ ├── file_halt.rst │ ├── file_index.rst │ ├── file_nodes.rst │ ├── file_rank2file.rst │ ├── file_summary.rst │ ├── file_transfer.rst │ ├── filemap.rst │ ├── flow_api.rst │ ├── flow_drain.rst │ ├── flow_flush.rst │ ├── flow_launch.rst │ ├── flow_util.rst │ ├── group_descriptors.rst │ ├── hash.rst │ ├── logging.rst │ ├── meta.rst │ ├── overview.rst │ ├── path.rst │ ├── redundancy_descriptors.rst │ ├── scheme_xor.rst │ ├── schemes.rst │ ├── store_descriptors.rst │ ├── testing_bamboo.rst │ ├── testing_gitlab.rst │ └── testing_new_systems.rst │ └── index.rst ├── doc ├── .readthedocs.yaml ├── requirements.in ├── requirements.txt └── rst │ ├── Makefile │ ├── _templates │ └── layout.html │ ├── conf.py │ ├── index.rst │ └── users │ ├── api.rst │ ├── assumptions.rst │ ├── build.rst │ ├── config.rst │ ├── directories_example.rst │ ├── fig │ ├── aggr_bw.png │ ├── directories_wide2.png │ ├── directories_wide3.png │ ├── restart.png │ ├── scr-states3.png │ └── scr_lassen.png │ ├── halt.rst │ ├── integration.rst │ ├── manage.rst │ ├── overview.rst │ ├── python_api.rst │ ├── quick.rst │ └── run.rst ├── examples ├── CMakeLists.txt ├── README.md ├── makefile.examples.in ├── run_test.sh ├── run_test_py.sh ├── test_api.c ├── test_api_file.c ├── test_api_multiple.c ├── test_api_multiple_file.c ├── test_ckpt.F ├── test_ckpt.F90 ├── test_ckpt.cpp ├── test_cleanup.sh ├── test_common.c ├── test_common.h ├── test_config.c ├── test_interpose.c ├── test_interpose_multiple.c └── test_scr_poststage ├── man ├── CMakeLists.txt ├── scr.1 ├── scr_halt.1 ├── scr_index.1 ├── scr_postrun.1 ├── scr_prerun.1 └── scr_srun.1 ├── python ├── CMakeLists.txt ├── README.md ├── scr.py.in ├── scr_example.py ├── scr_test.py ├── scr_test.sh └── setup.py ├── runme_style ├── scr.conf.template ├── scr.mysql ├── scr.user.conf.template ├── scripts ├── CMakeLists.txt ├── jobscripts │ ├── CMakeLists.txt │ ├── README.md │ ├── scr_flux_run.sh │ ├── scr_flux_run_loop.sh │ ├── scr_jsrun.sh │ ├── scr_jsrun_loop.sh │ ├── scr_srun.sh │ └── scr_srun_loop.sh ├── python │ ├── CMakeLists.txt │ ├── LICENSE │ ├── MANIFEST.in │ ├── README.md │ ├── commands │ │ ├── CMakeLists.txt │ │ ├── README.md │ │ ├── scr_fluxrun.py │ │ ├── scr_halt.py │ │ ├── scr_jsrun.py │ │ ├── scr_list_down_nodes.py │ │ ├── scr_lrun.py │ │ ├── scr_mpirun.py │ │ ├── scr_postrun.py │ │ ├── scr_prerun.py │ │ ├── scr_run.py │ │ ├── scr_should_exit.py │ │ └── scr_srun.py │ ├── scr_check_node.py │ ├── scr_ckpt_interval.py │ ├── scr_env.py │ ├── scr_hostlist.py │ ├── scr_inspect.py │ ├── scr_kill_jobstep.py │ ├── scr_list_dir.py │ ├── scr_poststage.py │ ├── scr_scavenge.py │ ├── scrjob │ │ ├── CMakeLists.txt │ │ ├── README.md │ │ ├── __init__.py │ │ ├── cli │ │ │ ├── CMakeLists.txt │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── scr_flush_file.py │ │ │ ├── scr_halt_cntl.py │ │ │ ├── scr_index.py │ │ │ ├── scr_log.py │ │ │ ├── scr_nodes_file.py │ │ │ └── scr_retries_halt.py │ │ ├── common.py │ │ ├── config.py.in │ │ ├── hostlist.py │ │ ├── jobenv.py │ │ ├── launchers │ │ │ ├── CMakeLists.txt │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── aprun.py │ │ │ ├── auto.py │ │ │ ├── flux.py │ │ │ ├── joblauncher.py │ │ │ ├── jsrun.py │ │ │ ├── lrun.py │ │ │ ├── mpirun.py │ │ │ └── srun.py │ │ ├── list_down_nodes.py │ │ ├── nodetests │ │ │ ├── CMakeLists.txt │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── dir_capacity.py │ │ │ ├── echo.py │ │ │ ├── nodetest.py │ │ │ ├── nodetests.py │ │ │ ├── ping.py │ │ │ ├── resmgr.py │ │ │ └── scr_exclude_nodes.py │ │ ├── param.py │ │ ├── parsetime.py │ │ ├── postrun.py │ │ ├── prerun.py │ │ ├── remoteexec │ │ │ ├── CMakeLists.txt │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── clustershell.py │ │ │ ├── flux.py │ │ │ ├── pdsh.py │ │ │ └── remoteexec.py │ │ ├── resmgrs │ │ │ ├── CMakeLists.txt │ │ │ ├── README.md │ │ │ ├── __init__.py │ │ │ ├── auto.py │ │ │ ├── flux.py │ │ │ ├── lsf.py │ │ │ ├── pbsalps.py │ │ │ ├── pmix.py │ │ │ ├── resourcemanager.py │ │ │ └── slurm.py │ │ ├── run.py │ │ ├── scavenge.py │ │ ├── scrlog.py │ │ ├── should_exit.py │ │ ├── test_runtime.py │ │ └── watchdog.py │ ├── setup.py │ └── tests │ │ ├── CMakeLists.txt │ │ ├── README.md │ │ ├── fluxenv.sh │ │ ├── printer.c │ │ ├── resetenv.sh │ │ ├── runtest.sh │ │ ├── sleeper.c │ │ ├── test_flush_file.py │ │ ├── test_launch.py │ │ ├── test_log.py │ │ ├── test_pdsh.py │ │ ├── test_resmgr.py │ │ ├── test_scr_index.py │ │ └── test_watchdog.py └── test │ ├── CMakeLists.txt │ ├── test.conf │ └── test_scr_param ├── src ├── CMakeLists.txt ├── axl │ ├── CMakeLists.txt │ ├── README │ ├── axl.c │ ├── axl.h │ ├── axl_async_bbapi.c │ ├── axl_async_bbapi.h │ ├── axl_async_datawarp.c │ ├── axl_async_datawarp.h │ ├── axl_err.c │ ├── axl_internal.h │ ├── axl_io.c │ ├── axl_mpi.c │ ├── axl_mpi.h │ ├── axl_pthread.c │ ├── axl_pthread.h │ ├── axl_sync.c │ ├── axl_sync.h │ ├── axl_util.c │ └── test │ │ ├── CMakeLists.txt │ │ ├── axl_cp.c │ │ ├── test_axl.sh │ │ ├── test_axl_metadata.sh │ │ └── test_config.c ├── dtcmp │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── README │ ├── dtcmp.c │ ├── dtcmp.h │ ├── dtcmp_internal.h │ ├── dtcmp_is_sorted.c │ ├── dtcmp_merge_2way.c │ ├── dtcmp_merge_kway_heap.c │ ├── dtcmp_ops.c │ ├── dtcmp_ops.h │ ├── dtcmp_partition_local.c │ ├── dtcmp_partitionz.c │ ├── dtcmp_partitionz_list.c │ ├── dtcmp_rankv_sort.c │ ├── dtcmp_search_binary.c │ ├── dtcmp_seg_exscan.c │ ├── dtcmp_select_local_ends.c │ ├── dtcmp_select_local_randpartition.c │ ├── dtcmp_selectv_medianofmedians.c │ ├── dtcmp_selectv_rand.c │ ├── dtcmp_sort_allgather.c │ ├── dtcmp_sort_bitonic.c │ ├── dtcmp_sort_local_insertionsort.c │ ├── dtcmp_sort_local_mergesort.c │ ├── dtcmp_sort_local_qsort.c │ ├── dtcmp_sort_local_randquicksort.c │ ├── dtcmp_sort_samplesort.c │ ├── dtcmp_sortv_allgather.c │ ├── dtcmp_sortv_cheng.c │ ├── dtcmp_sortv_sortgather_scatter.c │ ├── dtcmp_sortz_samplesort.c │ ├── dtcmp_uniqify.c │ ├── dtcmp_util.c │ ├── main.c │ ├── test_segscan.c │ └── tests.c ├── er │ ├── CMakeLists.txt │ ├── README │ ├── er.c │ ├── er.h │ ├── er_util.c │ └── er_util.h ├── kvtree │ ├── CMakeLists.txt │ ├── README │ ├── kvtree.c │ ├── kvtree.h │ ├── kvtree_byteswap.h │ ├── kvtree_err.c │ ├── kvtree_err.h │ ├── kvtree_helpers.c │ ├── kvtree_helpers.h │ ├── kvtree_io.c │ ├── kvtree_io.h │ ├── kvtree_mpi.c │ ├── kvtree_mpi.h │ ├── kvtree_mpi_io.c │ ├── kvtree_print.c │ ├── kvtree_util.c │ ├── kvtree_util.h │ ├── queue.h │ ├── tv_data_display.c │ └── tv_data_display.h ├── lwgrp │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── README │ ├── lwgrp.c │ ├── lwgrp.h │ ├── lwgrp_chain_ops.c │ ├── lwgrp_comm.c │ ├── lwgrp_comm_split.c │ ├── lwgrp_comm_split.h │ ├── lwgrp_internal.h │ ├── lwgrp_logchain_ops.c │ ├── lwgrp_logring_ops.c │ ├── lwgrp_ring_ops.c │ ├── lwgrp_util.c │ ├── test │ │ ├── README │ │ ├── makefile │ │ ├── test2level.c │ │ ├── testcommops.c │ │ ├── testsplit.c │ │ └── testsplit2.c │ ├── testsplit.c │ └── testsplit2.c ├── rankstr │ ├── CMakeLists.txt │ ├── README │ ├── rankstr_mpi.c │ └── rankstr_mpi.h ├── redset │ ├── CMakeLists.txt │ ├── README │ ├── redset.c │ ├── redset.h │ ├── redset_err_mpi.c │ ├── redset_err_serial.c │ ├── redset_internal.h │ ├── redset_io.c │ ├── redset_io.h │ ├── redset_lofi.c │ ├── redset_lofi.h │ ├── redset_partner.c │ ├── redset_partner_serial.c │ ├── redset_reedsolomon.c │ ├── redset_reedsolomon_common.c │ ├── redset_reedsolomon_common.h │ ├── redset_reedsolomon_gpu.cu │ ├── redset_reedsolomon_pthreads.c │ ├── redset_reedsolomon_serial.c │ ├── redset_single.c │ ├── redset_util.c │ ├── redset_util.h │ ├── redset_util_mpi.c │ ├── redset_xor.c │ ├── redset_xor_gpu.cu │ ├── redset_xor_pthreads.c │ └── redset_xor_serial.c ├── scr.c ├── scr.h ├── scr_cache.c ├── scr_cache.h ├── scr_cache_index.c ├── scr_cache_index.h ├── scr_cache_index_mpi.c ├── scr_cache_index_serial.c ├── scr_cache_rebuild.c ├── scr_cache_rebuild.h ├── scr_conf.h ├── scr_config.c ├── scr_config.h ├── scr_config_mpi.c ├── scr_config_serial.c ├── scr_copy.c ├── scr_crc32.c ├── scr_dataset.c ├── scr_dataset.h ├── scr_env.c ├── scr_env.h ├── scr_err.h ├── scr_err_mpi.c ├── scr_err_serial.c ├── scr_fetch.c ├── scr_fetch.h ├── scr_filemap.c ├── scr_filemap.h ├── scr_flush.c ├── scr_flush.h ├── scr_flush_async.c ├── scr_flush_async.h ├── scr_flush_file.c ├── scr_flush_file_mpi.c ├── scr_flush_file_mpi.h ├── scr_flush_nompi.c ├── scr_flush_nompi.h ├── scr_flush_sync.c ├── scr_flush_sync.h ├── scr_globals.c ├── scr_globals.h ├── scr_groupdesc.c ├── scr_groupdesc.h ├── scr_halt.c ├── scr_halt.h ├── scr_halt_cntl.c ├── scr_have_restart.c ├── scr_index.c ├── scr_index_api.c ├── scr_index_api.h ├── scr_inspect_cache.c ├── scr_interpose.c ├── scr_io.c ├── scr_io.h ├── scr_keys.h ├── scr_log.c ├── scr_log.h ├── scr_log_event.c ├── scr_log_transfer.c ├── scr_meta.c ├── scr_meta.h ├── scr_nodes_file.c ├── scr_param.c ├── scr_param.h ├── scr_prefix.c ├── scr_prefix.h ├── scr_print.c ├── scr_rebuild_partner.c ├── scr_rebuild_rs.c ├── scr_rebuild_xor.c ├── scr_reddesc.c ├── scr_reddesc.h ├── scr_retries_halt.c ├── scr_storedesc.c ├── scr_storedesc.h ├── scr_summary.c ├── scr_summary.h ├── scr_util.c ├── scr_util.h ├── scr_util_mpi.c ├── scr_util_mpi.h ├── scrf.c ├── scrf.h ├── shuffile │ ├── CMakeLists.txt │ ├── README │ ├── shuffile.c │ ├── shuffile.h │ ├── shuffile_io.c │ ├── shuffile_io.h │ ├── shuffile_util.c │ └── shuffile_util.h ├── spath │ ├── CMakeLists.txt │ ├── README │ ├── spath.c │ ├── spath.h │ ├── spath_mpi.c │ ├── spath_mpi.h │ ├── spath_util.c │ ├── spath_util.h │ ├── tv_data_display.c │ └── tv_data_display.h └── test │ ├── checks-lib.sh │ ├── checks_run.sh │ ├── docker-deploy.sh │ ├── docker │ ├── README.md │ ├── add_docker_user.sh │ ├── alpine │ │ └── Dockerfile │ ├── bookworm │ │ └── Dockerfile │ ├── docker-run-checks.sh │ ├── el9 │ │ └── Dockerfile │ └── fedora40 │ │ └── Dockerfile │ └── generate_matrix.py └── testing ├── BUILD_AND_RUN ├── MAKE_AND_RUN ├── NOBUILD_AND_RUN ├── README.md ├── TEST ├── TESTING.csh └── TESTING.sh /.github/workflows/main.yml: -------------------------------------------------------------------------------- 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